RNA–Protein interactions for RNA: ENST00000331222.5

CLN8-201, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN8, Length 7,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-201ENST00000331222 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
CLN8-201ENST00000331222 EHMT2Q96KQ7 1210 aa17.66■□□□□ 0.42
CLN8-201ENST00000331222 SUPT5HO00267 1087 aaKnown RBP17.36■□□□□ 0.37
CLN8-201ENST00000331222 SHROOM4Q9ULL8 1493 aa17.07■□□□□ 0.32
CLN8-201ENST00000331222 TTBK1Q5TCY1 1321 aaPredicted RBP16.98■□□□□ 0.31
CLN8-201ENST00000331222 RANGAP1P46060 587 aaPredicted RBP16.73■□□□□ 0.27
CLN8-201ENST00000331222 NISCHQ9Y2I1 1504 aa16.72■□□□□ 0.27
CLN8-201ENST00000331222 PELP1Q8IZL8 1130 aaKnown RBP16.72■□□□□ 0.27
CLN8-201ENST00000331222 APLP2Q06481 763 aa16.65■□□□□ 0.26
CLN8-201ENST00000331222 FAM9AQ8IZU1 332 aaPredicted RBP16.62■□□□□ 0.25
CLN8-201ENST00000331222 ATP1B4Q9UN42 357 aaPredicted RBP16.55■□□□□ 0.24
CLN8-201ENST00000331222 ERICH6Q7L0X2 663 aa16.46■□□□□ 0.22
CLN8-201ENST00000331222 PCGF6Q9BYE7 350 aa16.39■□□□□ 0.22
CLN8-201ENST00000331222 YTHDC1Q96MU7 727 aaKnown RBP16.14■□□□□ 0.17
CLN8-201ENST00000331222 MYT1Q01538 1121 aa16.13■□□□□ 0.17
CLN8-201ENST00000331222 CHIC1Q5VXU3 224 aa16.1■□□□□ 0.17
CLN8-201ENST00000331222 CCER1Q8TC90 406 aaPredicted RBP16.07■□□□□ 0.16
CLN8-201ENST00000331222 PPARGC1BQ86YN6 1023 aaKnown RBP16.04■□□□□ 0.16
CLN8-201ENST00000331222 MYT1LQ9UL68 1186 aa16.03■□□□□ 0.16
CLN8-201ENST00000331222 CNGB1Q14028 1251 aaPredicted RBP16.03■□□□□ 0.16
CLN8-201ENST00000331222 POLR3GLQ9BT43 218 aa15.98■□□□□ 0.15
CLN8-201ENST00000331222 UBTFP17480 764 aaKnown RBP15.93■□□□□ 0.14
CLN8-201ENST00000331222 CENPBP07199 599 aaPredicted RBP15.91■□□□□ 0.14
CLN8-201ENST00000331222 NEFLP07196 543 aa15.86■□□□□ 0.13
CLN8-201ENST00000331222 TRIM41Q8WV44 630 aa15.82■□□□□ 0.12
CLN8-201ENST00000331222 SLC4A1APQ9BWU0 796 aaKnown RBP15.8■□□□□ 0.12
CLN8-201ENST00000331222 ITGAEP38570 1179 aa15.79■□□□□ 0.12
CLN8-201ENST00000331222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.77■□□□□ 0.11
CLN8-201ENST00000331222 HNRNPUL2Q1KMD3 747 aaKnown RBP15.77■□□□□ 0.11
CLN8-201ENST00000331222 DAXXQ9UER7 740 aaPredicted RBP15.69■□□□□ 0.1
CLN8-201ENST00000331222 ZEB1P37275 1124 aaPredicted RBP15.51■□□□□ 0.07
CLN8-201ENST00000331222 BCL11AQ9H165 835 aa15.5■□□□□ 0.07
CLN8-201ENST00000331222 SLC24A1O60721 1099 aa15.41■□□□□ 0.06
CLN8-201ENST00000331222 CLSPNQ9HAW4 1339 aa15.4■□□□□ 0.06
CLN8-201ENST00000331222 ZNF316A6NFI3 1004 aaPredicted RBP15.32■□□□□ 0.04
CLN8-201ENST00000331222 LOC105371045A0A1W2PR82 267 aa15.19■□□□□ 0.02
CLN8-201ENST00000331222 PLPPR3Q6T4P5 718 aa15.18■□□□□ 0.02
CLN8-201ENST00000331222 BCANQ96GW7 911 aa15.16■□□□□ 0.02
CLN8-201ENST00000331222 FAM50AQ14320 339 aaKnown RBP15.15■□□□□ 0.02
CLN8-201ENST00000331222 ZNF326Q5BKZ1 582 aaKnown RBP15.13■□□□□ 0.01
CLN8-201ENST00000331222 NEUROD1Q13562 356 aa15.13■□□□□ 0.01
CLN8-201ENST00000331222 TRIM52Q96A61 297 aa15.12■□□□□ 0.01
CLN8-201ENST00000331222 TRIM26Q12899 539 aaPredicted RBP15.09■□□□□ 0.01
CLN8-201ENST00000331222 RTL5Q5HYW3 569 aaPredicted RBP15.09■□□□□ 0.01
CLN8-201ENST00000331222 HRCP23327 699 aa15.06■□□□□ 0
CLN8-201ENST00000331222 FBLN2P98095 1184 aa15.04■□□□□ -0
CLN8-201ENST00000331222 ZBTB47Q9UFB7 747 aaPredicted RBP15□□□□□ -0.01
CLN8-201ENST00000331222 ARID3CA6NKF2 412 aa14.99□□□□□ -0.01
CLN8-201ENST00000331222 CANXP27824 592 aaKnown RBP14.93□□□□□ -0.02
CLN8-201ENST00000331222 DIEXFQ68CQ4 756 aaKnown RBP14.88□□□□□ -0.03
CLN8-201ENST00000331222 PABPN1Q86U42 306 aaKnown RBP eCLIP14.83□□□□□ -0.03
CLN8-201ENST00000331222 PLEKHG5O94827 1062 aa14.81□□□□□ -0.04
CLN8-201ENST00000331222 NPM2Q86SE8 214 aaKnown RBP14.79□□□□□ -0.04
CLN8-201ENST00000331222 SENP3Q9H4L4 574 aaPredicted RBP14.79□□□□□ -0.04
CLN8-201ENST00000331222 A0A0G2JS52 829 aa14.77□□□□□ -0.04
CLN8-201ENST00000331222 P3H3Q8IVL6 736 aa14.77□□□□□ -0.05
CLN8-201ENST00000331222 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
CLN8-201ENST00000331222 NEFMP07197 916 aa14.72□□□□□ -0.05
CLN8-201ENST00000331222 ANP32CO43423 234 aa14.71□□□□□ -0.05
CLN8-201ENST00000331222 ZNF777Q9ULD5 760 aaPredicted RBP14.71□□□□□ -0.05
CLN8-201ENST00000331222 CDK11AQ9UQ88 783 aaPredicted RBP14.7□□□□□ -0.06
CLN8-201ENST00000331222 CHGAP10645 457 aaKnown RBP14.7□□□□□ -0.06
CLN8-201ENST00000331222 SALL2Q9Y467 1007 aaPredicted RBP14.67□□□□□ -0.06
CLN8-201ENST00000331222 ARXQ96QS3 562 aa14.65□□□□□ -0.06
CLN8-201ENST00000331222 STAG3Q9UJ98 1225 aa14.64□□□□□ -0.07
CLN8-201ENST00000331222 GTF3C3Q9Y5Q9 886 aa14.64□□□□□ -0.07
CLN8-201ENST00000331222 ESF1Q9H501 851 aaKnown RBP14.63□□□□□ -0.07
CLN8-201ENST00000331222 ZBTB7CA1YPR0 619 aa14.59□□□□□ -0.07
CLN8-201ENST00000331222 HSP90AA1P07900 732 aaKnown RBP14.58□□□□□ -0.08
CLN8-201ENST00000331222 EIF5BO60841 1220 aaKnown RBP14.57□□□□□ -0.08
CLN8-201ENST00000331222 TULP1O00294 542 aaPredicted RBP14.55□□□□□ -0.08
CLN8-201ENST00000331222 ABCC9O60706 1549 aa14.52□□□□□ -0.08
CLN8-201ENST00000331222 ANP32AP39687 249 aaKnown RBP14.48□□□□□ -0.09
CLN8-201ENST00000331222 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLN8-201ENST00000331222 C14orf37Q86TY3 774 aa14.42□□□□□ -0.1
CLN8-201ENST00000331222 FAM9BQ8IZU0 186 aa14.42□□□□□ -0.1
CLN8-201ENST00000331222 ANP32BQ92688 251 aaKnown RBP14.42□□□□□ -0.1
CLN8-201ENST00000331222 NBR1Q14596 966 aa14.42□□□□□ -0.1
CLN8-201ENST00000331222 TPRNQ4KMQ1 711 aa14.42□□□□□ -0.1
CLN8-201ENST00000331222 TAOK2Q9UL54 1235 aa14.38□□□□□ -0.11
CLN8-201ENST00000331222 SENP3-EIF4A1A0A087X0R7 540 aa14.38□□□□□ -0.11
CLN8-201ENST00000331222 FKBP8Q14318 412 aa14.35□□□□□ -0.11
CLN8-201ENST00000331222 KDM2AQ9Y2K7 1162 aa14.34□□□□□ -0.11
CLN8-201ENST00000331222 NCBP3Q53F19 620 aaKnown RBP14.32□□□□□ -0.12
CLN8-201ENST00000331222 CHIC2Q9UKJ5 165 aa14.3□□□□□ -0.12
CLN8-201ENST00000331222 IRX6P78412 446 aaPredicted RBP14.3□□□□□ -0.12
CLN8-201ENST00000331222 CDK11BP21127 795 aaKnown RBP14.3□□□□□ -0.12
CLN8-201ENST00000331222 UPF2Q9HAU5 1272 aaKnown RBP14.29□□□□□ -0.12
CLN8-201ENST00000331222 HNRNPUQ00839 825 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLN8-201ENST00000331222 NPM1P06748 294 aaKnown RBP eCLIP14.26□□□□□ -0.13
CLN8-201ENST00000331222 HIRIP3Q9BW71 556 aaPredicted RBP14.26□□□□□ -0.13
CLN8-201ENST00000331222 DDX10Q13206 875 aaKnown RBP14.25□□□□□ -0.13
CLN8-201ENST00000331222 HAP1P54257 671 aaPredicted RBP14.24□□□□□ -0.13
CLN8-201ENST00000331222 WDR43Q15061 677 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLN8-201ENST00000331222 TMC1Q8TDI8 760 aa14.19□□□□□ -0.14
CLN8-201ENST00000331222 TONSLQ96HA7 1378 aa14.17□□□□□ -0.14
CLN8-201ENST00000331222 PPM1GO15355 546 aaPredicted RBP14.16□□□□□ -0.14
CLN8-201ENST00000331222 CCDC136Q96JN2 1154 aa14.15□□□□□ -0.14
CLN8-201ENST00000331222 NPHP1O15259 732 aa14.14□□□□□ -0.15
CLN8-201ENST00000331222 ARID4BQ4LE39 1312 aaPredicted RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms