RNA–Protein interactions for RNA: ENSMUST00000109543.8

Vcan-201, Transcript of Versican core protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Vcan, Length 2,321 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Vcan-201ENSMUST00000109543 NischQ80TM9 1593 aa30.72■■■□□ 2.51
Vcan-201ENSMUST00000109543 Gm35339A0A140LHH9 1649 aa30.25■■■□□ 2.43
Vcan-201ENSMUST00000109543 Abcc9P70170 1546 aa29.82■■■□□ 2.36
Vcan-201ENSMUST00000109543 Abcc8B2RUS7 1588 aa29.22■■■□□ 2.27
Vcan-201ENSMUST00000109543 Rhox8Q6VSS7 320 aa28.32■■■□□ 2.12
Vcan-201ENSMUST00000109543 Rtl1Q7M732 1744 aa27.73■■■□□ 2.03
Vcan-201ENSMUST00000109543 ScribQ80U72 1612 aa27.31■■□□□ 1.96
Vcan-201ENSMUST00000109543 Ccdc180J3QNE4 1664 aa27.2■■□□□ 1.95
Vcan-201ENSMUST00000109543 Dcaf1Q80TR8 1506 aa27.2■■□□□ 1.94
Vcan-201ENSMUST00000109543 Rb1cc1Q9ESK9 1588 aa26.91■■□□□ 1.9
Vcan-201ENSMUST00000109543 Zcchc6Q5BLK4 1491 aaKnown RBP26.83■■□□□ 1.88
Vcan-201ENSMUST00000109543 Kdm5dQ62240 1548 aa26.78■■□□□ 1.88
Vcan-201ENSMUST00000109543 Baz1aO88379 1555 aa26.58■■□□□ 1.85
Vcan-201ENSMUST00000109543 NacadQ5SWP3 1504 aa26.57■■□□□ 1.84
Vcan-201ENSMUST00000109543 Ccdc136Q3TVA9 1136 aa26.29■■□□□ 1.8
Vcan-201ENSMUST00000109543 Crybg2B7ZCC2 1516 aa26.09■■□□□ 1.77
Vcan-201ENSMUST00000109543 Sycp2Q9CUU3 1500 aa26.01■■□□□ 1.75
Vcan-201ENSMUST00000109543 Smarca2Q6DIC0 1577 aa25.97■■□□□ 1.75
Vcan-201ENSMUST00000109543 HrcG5E8J6 738 aa25.94■■□□□ 1.74
Vcan-201ENSMUST00000109543 Trim41Q5NCC3 630 aa25.72■■□□□ 1.71
Vcan-201ENSMUST00000109543 BicraF8VPZ9 1578 aa25.44■■□□□ 1.66
Vcan-201ENSMUST00000109543 Cecr2E9Q2Z1 1453 aa25.4■■□□□ 1.66
Vcan-201ENSMUST00000109543 Brd4Q9ESU6 1400 aaKnown RBP25.34■■□□□ 1.65
Vcan-201ENSMUST00000109543 Rpgrip1Q9EPQ2 1331 aa25.28■■□□□ 1.64
Vcan-201ENSMUST00000109543 Cep164Q5DU05 1446 aa25.26■■□□□ 1.63
Vcan-201ENSMUST00000109543 Ehmt2Q9Z148 1263 aaKnown RBP25.2■■□□□ 1.63
Vcan-201ENSMUST00000109543 Synj1Q8CHC4 1574 aa25.17■■□□□ 1.62
Vcan-201ENSMUST00000109543 Cngb1E1AZ71 1325 aa25.17■■□□□ 1.62
Vcan-201ENSMUST00000109543 Acin1Q9JIX8 1338 aaKnown RBP25.08■■□□□ 1.61
Vcan-201ENSMUST00000109543 Golga3P55937 1487 aa25.04■■□□□ 1.6
Vcan-201ENSMUST00000109543 Rsf1E9PWW9 1441 aaKnown RBP25.03■■□□□ 1.6
Vcan-201ENSMUST00000109543 CftrP26361 1476 aa25.01■■□□□ 1.59
Vcan-201ENSMUST00000109543 Chic1Q8CBW7 227 aa25■■□□□ 1.59
Vcan-201ENSMUST00000109543 Ccdc88bQ4QRL3 1481 aa24.89■■□□□ 1.58
Vcan-201ENSMUST00000109543 Cttnbp2B9EJA2 1648 aa24.88■■□□□ 1.57
Vcan-201ENSMUST00000109543 Esf1Q3V1V3 845 aaKnown RBP24.87■■□□□ 1.57
Vcan-201ENSMUST00000109543 Smarca4Q3TKT4 1613 aaKnown RBP24.86■■□□□ 1.57
Vcan-201ENSMUST00000109543 Gab3Q8BSM5 595 aa24.78■■□□□ 1.56
Vcan-201ENSMUST00000109543 Top2bQ64511 1612 aa24.77■■□□□ 1.56
Vcan-201ENSMUST00000109543 Cc2d2aQ8CFW7 1633 aa24.56■■□□□ 1.52
Vcan-201ENSMUST00000109543 Iqgap2Q3UQ44 1575 aa24.54■■□□□ 1.52
Vcan-201ENSMUST00000109543 Atad2bE9Q166 1460 aaKnown RBP24.44■■□□□ 1.5
Vcan-201ENSMUST00000109543 Fmn1Q05860 1466 aa24.4■■□□□ 1.5
Vcan-201ENSMUST00000109543 Pds5bQ4VA53 1446 aaKnown RBP24.34■■□□□ 1.49
Vcan-201ENSMUST00000109543 Top2aQ01320 1528 aaKnown RBP24.27■■□□□ 1.48
Vcan-201ENSMUST00000109543 Rapgef2Q8CHG7 1496 aa24.22■■□□□ 1.47
Vcan-201ENSMUST00000109543 Frmpd1A2AKB4 1549 aa24.08■■□□□ 1.44
Vcan-201ENSMUST00000109543 Wdr62Q3U3T8 1523 aa24.06■■□□□ 1.44
Vcan-201ENSMUST00000109543 TnnQ80Z71 1560 aa24.04■■□□□ 1.44
Vcan-201ENSMUST00000109543 Cep162Q6ZQ06 1403 aa24.02■■□□□ 1.44
Vcan-201ENSMUST00000109543 Mier1Q5UAK0 511 aa23.94■■□□□ 1.42
Vcan-201ENSMUST00000109543 Myt1lP97500 1187 aa23.93■■□□□ 1.42
Vcan-201ENSMUST00000109543 Npm2Q80W85 207 aa23.93■■□□□ 1.42
Vcan-201ENSMUST00000109543 Ercc6F8VPZ5 1481 aa23.92■■□□□ 1.42
Vcan-201ENSMUST00000109543 Pcgf6Q99NA9 353 aa23.88■■□□□ 1.41
Vcan-201ENSMUST00000109543 Lamc3Q9R0B6 1581 aa23.87■■□□□ 1.41
Vcan-201ENSMUST00000109543 Eif4g1Q6NZJ6 1600 aaKnown RBP23.82■■□□□ 1.4
Vcan-201ENSMUST00000109543 Unc13aQ4KUS2 1712 aa23.81■■□□□ 1.4
Vcan-201ENSMUST00000109543 Kif15Q6P9L6 1387 aa23.8■■□□□ 1.4
Vcan-201ENSMUST00000109543 NefmP08553 848 aa23.78■■□□□ 1.4
Vcan-201ENSMUST00000109543 UbtfP25976 765 aaKnown RBP23.75■■□□□ 1.39
Vcan-201ENSMUST00000109543 Il27Q8K3I6 234 aa23.72■■□□□ 1.39
Vcan-201ENSMUST00000109543 PtprkP35822 1457 aa23.7■■□□□ 1.38
Vcan-201ENSMUST00000109543 Camsap1A2AHC3 1581 aa23.67■■□□□ 1.38
Vcan-201ENSMUST00000109543 Arhgap35Q91YM2 1499 aa23.66■■□□□ 1.38
Vcan-201ENSMUST00000109543 NrkQ9R0G8 1455 aa23.65■■□□□ 1.38
Vcan-201ENSMUST00000109543 Clip1Q922J3 1391 aa23.65■■□□□ 1.38
Vcan-201ENSMUST00000109543 Supt5hO55201 1082 aaKnown RBP23.64■■□□□ 1.37
Vcan-201ENSMUST00000109543 Shroom4Q1W617 1475 aa23.58■■□□□ 1.37
Vcan-201ENSMUST00000109543 Zeb1Q64318 1117 aa23.58■■□□□ 1.37
Vcan-201ENSMUST00000109543 Thoc2B1AZI6 1594 aaKnown RBP23.56■■□□□ 1.36
Vcan-201ENSMUST00000109543 Ccdc18Q640L5 1455 aa23.55■■□□□ 1.36
Vcan-201ENSMUST00000109543 Phldb1Q6PDH0 1371 aaKnown RBP23.54■■□□□ 1.36
Vcan-201ENSMUST00000109543 Plekhg3Q4VAC9 1341 aa23.5■■□□□ 1.35
Vcan-201ENSMUST00000109543 Grin2bQ01097 1482 aa23.5■■□□□ 1.35
Vcan-201ENSMUST00000109543 Map3k1P53349 1493 aa23.45■■□□□ 1.34
Vcan-201ENSMUST00000109543 Eea1Q8BL66 1411 aa23.42■■□□□ 1.34
Vcan-201ENSMUST00000109543 Cux2P70298 1426 aa23.41■■□□□ 1.34
Vcan-201ENSMUST00000109543 Ubl4bQ9CQ84 188 aa23.41■■□□□ 1.34
Vcan-201ENSMUST00000109543 Arap1Q4LDD4 1452 aa23.39■■□□□ 1.34
Vcan-201ENSMUST00000109543 Mroh2bQ7M6Y6 1581 aa23.35■■□□□ 1.33
Vcan-201ENSMUST00000109543 Setd5Q5XJV7 1441 aa23.34■■□□□ 1.33
Vcan-201ENSMUST00000109543 Ap3b1Q9Z1T1 1105 aa23.32■■□□□ 1.32
Vcan-201ENSMUST00000109543 Baz1bQ9Z277 1479 aa23.32■■□□□ 1.32
Vcan-201ENSMUST00000109543 Npm1Q61937 292 aaKnown RBP23.32■■□□□ 1.32
Vcan-201ENSMUST00000109543 Fam135aQ6NS59 1506 aa23.31■■□□□ 1.32
Vcan-201ENSMUST00000109543 Arhgef5E9Q7D5 1581 aa23.3■■□□□ 1.32
Vcan-201ENSMUST00000109543 Ncapd3Q6ZQK0 1506 aa23.28■■□□□ 1.32
Vcan-201ENSMUST00000109543 LrpprcQ6PB66 1392 aaKnown RBP23.22■■□□□ 1.31
Vcan-201ENSMUST00000109543 AqrQ8CFQ3 1481 aaKnown RBP23.22■■□□□ 1.31
Vcan-201ENSMUST00000109543 Efcab5A0JP43 1406 aa23.21■■□□□ 1.31
Vcan-201ENSMUST00000109543 Ankrd26Q811D2 1581 aa23.2■■□□□ 1.3
Vcan-201ENSMUST00000109543 PogzQ8BZH4 1409 aaKnown RBP23.18■■□□□ 1.3
Vcan-201ENSMUST00000109543 Las1lA2BE28 776 aaKnown RBP23.18■■□□□ 1.3
Vcan-201ENSMUST00000109543 Erich3F6QRE9 1637 aa23.17■■□□□ 1.3
Vcan-201ENSMUST00000109543 Sall2Q9QX96 1004 aa23.17■■□□□ 1.3
Vcan-201ENSMUST00000109543 Duox2A2AQ99 1517 aa23.16■■□□□ 1.3
Vcan-201ENSMUST00000109543 Tiam1Q60610 1591 aa23.16■■□□□ 1.3
Vcan-201ENSMUST00000109543 Carmil1Q6EDY6 1374 aa23.1■■□□□ 1.29
Vcan-201ENSMUST00000109543 Naip1Q9QWK5 1403 aa23.09■■□□□ 1.29
Retrieved 100 of 22,080 RNA–protein pairs in 63.8 ms