RNA–Protein interactions for RNA: ENSMUST00000053871.4

Ckap4-201, Transcript of Cytoskeleton-associated protein 4, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ckap4, Length 3,089 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ckap4-201ENSMUST00000053871 NischQ80TM9 1593 aa30.47■■■□□ 2.47
Ckap4-201ENSMUST00000053871 Gm35339A0A140LHH9 1649 aa29.45■■■□□ 2.3
Ckap4-201ENSMUST00000053871 Abcc9P70170 1546 aa29.44■■■□□ 2.3
Ckap4-201ENSMUST00000053871 Rhox8Q6VSS7 320 aa29.03■■■□□ 2.24
Ckap4-201ENSMUST00000053871 Abcc8B2RUS7 1588 aa28.81■■■□□ 2.2
Ckap4-201ENSMUST00000053871 Rtl1Q7M732 1744 aa27.67■■■□□ 2.02
Ckap4-201ENSMUST00000053871 Ccdc180J3QNE4 1664 aa27.39■■□□□ 1.97
Ckap4-201ENSMUST00000053871 Ccdc136Q3TVA9 1136 aa26.93■■□□□ 1.9
Ckap4-201ENSMUST00000053871 Zcchc6Q5BLK4 1491 aaKnown RBP26.91■■□□□ 1.9
Ckap4-201ENSMUST00000053871 ScribQ80U72 1612 aa26.82■■□□□ 1.88
Ckap4-201ENSMUST00000053871 Rb1cc1Q9ESK9 1588 aa26.72■■□□□ 1.87
Ckap4-201ENSMUST00000053871 Dcaf1Q80TR8 1506 aa26.6■■□□□ 1.85
Ckap4-201ENSMUST00000053871 Ehmt2Q9Z148 1263 aaKnown RBP26.56■■□□□ 1.84
Ckap4-201ENSMUST00000053871 Kdm5dQ62240 1548 aa26.43■■□□□ 1.82
Ckap4-201ENSMUST00000053871 Baz1aO88379 1555 aa26.3■■□□□ 1.8
Ckap4-201ENSMUST00000053871 HrcG5E8J6 738 aa26.28■■□□□ 1.8
Ckap4-201ENSMUST00000053871 Rpgrip1Q9EPQ2 1331 aa26.17■■□□□ 1.78
Ckap4-201ENSMUST00000053871 Trim41Q5NCC3 630 aa26.16■■□□□ 1.78
Ckap4-201ENSMUST00000053871 NacadQ5SWP3 1504 aa26.12■■□□□ 1.77
Ckap4-201ENSMUST00000053871 Acin1Q9JIX8 1338 aaKnown RBP25.99■■□□□ 1.75
Ckap4-201ENSMUST00000053871 Cngb1E1AZ71 1325 aa25.72■■□□□ 1.71
Ckap4-201ENSMUST00000053871 Smarca2Q6DIC0 1577 aa25.68■■□□□ 1.7
Ckap4-201ENSMUST00000053871 Gab3Q8BSM5 595 aa25.57■■□□□ 1.68
Ckap4-201ENSMUST00000053871 Crybg2B7ZCC2 1516 aa25.55■■□□□ 1.68
Ckap4-201ENSMUST00000053871 Sycp2Q9CUU3 1500 aa25.54■■□□□ 1.68
Ckap4-201ENSMUST00000053871 Cep164Q5DU05 1446 aa25.47■■□□□ 1.67
Ckap4-201ENSMUST00000053871 Chic1Q8CBW7 227 aa25.46■■□□□ 1.67
Ckap4-201ENSMUST00000053871 Cecr2E9Q2Z1 1453 aa25.33■■□□□ 1.65
Ckap4-201ENSMUST00000053871 Rsf1E9PWW9 1441 aaKnown RBP25.29■■□□□ 1.64
Ckap4-201ENSMUST00000053871 Esf1Q3V1V3 845 aaKnown RBP25.28■■□□□ 1.64
Ckap4-201ENSMUST00000053871 Brd4Q9ESU6 1400 aaKnown RBP25.25■■□□□ 1.63
Ckap4-201ENSMUST00000053871 Ccdc88bQ4QRL3 1481 aa25.12■■□□□ 1.61
Ckap4-201ENSMUST00000053871 Pcgf6Q99NA9 353 aa25.09■■□□□ 1.61
Ckap4-201ENSMUST00000053871 Synj1Q8CHC4 1574 aa25.04■■□□□ 1.6
Ckap4-201ENSMUST00000053871 Golga3P55937 1487 aa25.03■■□□□ 1.6
Ckap4-201ENSMUST00000053871 BicraF8VPZ9 1578 aa25■■□□□ 1.59
Ckap4-201ENSMUST00000053871 CftrP26361 1476 aa24.85■■□□□ 1.57
Ckap4-201ENSMUST00000053871 Supt5hO55201 1082 aaKnown RBP24.81■■□□□ 1.56
Ckap4-201ENSMUST00000053871 Zeb1Q64318 1117 aa24.77■■□□□ 1.56
Ckap4-201ENSMUST00000053871 Mier1Q5UAK0 511 aa24.7■■□□□ 1.55
Ckap4-201ENSMUST00000053871 Myt1lP97500 1187 aa24.62■■□□□ 1.53
Ckap4-201ENSMUST00000053871 UbtfP25976 765 aaKnown RBP24.57■■□□□ 1.52
Ckap4-201ENSMUST00000053871 Cttnbp2B9EJA2 1648 aa24.56■■□□□ 1.52
Ckap4-201ENSMUST00000053871 Top2bQ64511 1612 aa24.52■■□□□ 1.52
Ckap4-201ENSMUST00000053871 Cc2d2aQ8CFW7 1633 aa24.5■■□□□ 1.51
Ckap4-201ENSMUST00000053871 Smarca4Q3TKT4 1613 aaKnown RBP24.48■■□□□ 1.51
Ckap4-201ENSMUST00000053871 NefmP08553 848 aa24.45■■□□□ 1.5
Ckap4-201ENSMUST00000053871 Npm2Q80W85 207 aa24.43■■□□□ 1.5
Ckap4-201ENSMUST00000053871 Fmn1Q05860 1466 aa24.28■■□□□ 1.48
Ckap4-201ENSMUST00000053871 Rapgef2Q8CHG7 1496 aa24.24■■□□□ 1.47
Ckap4-201ENSMUST00000053871 Iqgap2Q3UQ44 1575 aa24.2■■□□□ 1.47
Ckap4-201ENSMUST00000053871 Sall2Q9QX96 1004 aa24.18■■□□□ 1.46
Ckap4-201ENSMUST00000053871 Cep162Q6ZQ06 1403 aa24.17■■□□□ 1.46
Ckap4-201ENSMUST00000053871 Il27Q8K3I6 234 aa24.17■■□□□ 1.46
Ckap4-201ENSMUST00000053871 Top2aQ01320 1528 aaKnown RBP24.15■■□□□ 1.46
Ckap4-201ENSMUST00000053871 Plekhg3Q4VAC9 1341 aa24.14■■□□□ 1.46
Ckap4-201ENSMUST00000053871 Wdr66E9Q743 1299 aa24.11■■□□□ 1.45
Ckap4-201ENSMUST00000053871 Neurod1Q60867 357 aa24.07■■□□□ 1.44
Ckap4-201ENSMUST00000053871 Ppargc1bQ8VHJ7 1014 aa24.03■■□□□ 1.44
Ckap4-201ENSMUST00000053871 Atad2bE9Q166 1460 aaKnown RBP24.01■■□□□ 1.43
Ckap4-201ENSMUST00000053871 Las1lA2BE28 776 aaKnown RBP24.01■■□□□ 1.43
Ckap4-201ENSMUST00000053871 Clip1Q922J3 1391 aa24.01■■□□□ 1.43
Ckap4-201ENSMUST00000053871 Ap3b1Q9Z1T1 1105 aa23.99■■□□□ 1.43
Ckap4-201ENSMUST00000053871 Aebp2Q9Z248 504 aaKnown RBP23.95■■□□□ 1.42
Ckap4-201ENSMUST00000053871 Pds5bQ4VA53 1446 aaKnown RBP23.88■■□□□ 1.41
Ckap4-201ENSMUST00000053871 Kif15Q6P9L6 1387 aa23.79■■□□□ 1.4
Ckap4-201ENSMUST00000053871 PtprkP35822 1457 aa23.77■■□□□ 1.4
Ckap4-201ENSMUST00000053871 Frmpd1A2AKB4 1549 aa23.75■■□□□ 1.39
Ckap4-201ENSMUST00000053871 TonslQ6NZL6 1363 aa23.73■■□□□ 1.39
Ckap4-201ENSMUST00000053871 Arhgap35Q91YM2 1499 aa23.68■■□□□ 1.38
Ckap4-201ENSMUST00000053871 Eid3Q3V124 375 aa23.65■■□□□ 1.38
Ckap4-201ENSMUST00000053871 TnnQ80Z71 1560 aa23.64■■□□□ 1.37
Ckap4-201ENSMUST00000053871 Wdr62Q3U3T8 1523 aa23.63■■□□□ 1.37
Ckap4-201ENSMUST00000053871 Eif4g1Q6NZJ6 1600 aaKnown RBP23.62■■□□□ 1.37
Ckap4-201ENSMUST00000053871 Setd5Q5XJV7 1441 aa23.61■■□□□ 1.37
Ckap4-201ENSMUST00000053871 ClspnQ80YR7 1315 aa23.6■■□□□ 1.37
Ckap4-201ENSMUST00000053871 Eea1Q8BL66 1411 aa23.59■■□□□ 1.37
Ckap4-201ENSMUST00000053871 Ercc6F8VPZ5 1481 aa23.57■■□□□ 1.36
Ckap4-201ENSMUST00000053871 Arap1Q4LDD4 1452 aa23.55■■□□□ 1.36
Ckap4-201ENSMUST00000053871 Ncapd3Q6ZQK0 1506 aa23.5■■□□□ 1.35
Ckap4-201ENSMUST00000053871 Lamc3Q9R0B6 1581 aa23.5■■□□□ 1.35
Ckap4-201ENSMUST00000053871 NrkQ9R0G8 1455 aa23.49■■□□□ 1.35
Ckap4-201ENSMUST00000053871 Nop58Q6DFW4 536 aaKnown RBP23.49■■□□□ 1.35
Ckap4-201ENSMUST00000053871 Lmod2Q3UHZ5 550 aa23.48■■□□□ 1.35
Ckap4-201ENSMUST00000053871 Shroom4Q1W617 1475 aa23.47■■□□□ 1.35
Ckap4-201ENSMUST00000053871 Cdk11bP24788 784 aaKnown RBP23.45■■□□□ 1.34
Ckap4-201ENSMUST00000053871 Camsap1A2AHC3 1581 aa23.43■■□□□ 1.34
Ckap4-201ENSMUST00000053871 Ccdc18Q640L5 1455 aa23.42■■□□□ 1.34
Ckap4-201ENSMUST00000053871 Fam50aQ9WV03 339 aaKnown RBP23.42■■□□□ 1.34
Ckap4-201ENSMUST00000053871 Npm1Q61937 292 aaKnown RBP23.41■■□□□ 1.34
Ckap4-201ENSMUST00000053871 BlmO88700 1416 aa23.4■■□□□ 1.34
Ckap4-201ENSMUST00000053871 Ubl4bQ9CQ84 188 aa23.39■■□□□ 1.34
Ckap4-201ENSMUST00000053871 Baz1bQ9Z277 1479 aa23.38■■□□□ 1.33
Ckap4-201ENSMUST00000053871 Anks4bQ8K3X6 423 aa23.36■■□□□ 1.33
Ckap4-201ENSMUST00000053871 Arhgef5E9Q7D5 1581 aa23.35■■□□□ 1.33
Ckap4-201ENSMUST00000053871 Unc13aQ4KUS2 1712 aa23.34■■□□□ 1.33
Ckap4-201ENSMUST00000053871 Grin2bQ01097 1482 aa23.33■■□□□ 1.33
Ckap4-201ENSMUST00000053871 Csrnp3P59055 597 aa23.33■■□□□ 1.33
Ckap4-201ENSMUST00000053871 Cux2P70298 1426 aa23.3■■□□□ 1.32
Ckap4-201ENSMUST00000053871 AqrQ8CFQ3 1481 aaKnown RBP23.28■■□□□ 1.32
Retrieved 100 of 22,080 RNA–protein pairs in 56.3 ms