RNA–Protein interactions for RNA: YDL230W

PTP1, Transcript of Phosphotyrosine-specific protein phosphatase, yeast

Gene PTP1, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTP1	YDL230W	NOP58	Q12499	511 aa	Known RBP	13.8	□□□□□ -0.2
PTP1	YDL230W	TUF1	P02992	437 aa	Known RBP	13.79	□□□□□ -0.2
PTP1	YDL230W	THR4	P16120	514 aa	Known RBP	13.79	□□□□□ -0.2
PTP1	YDL230W	SRM1	P21827	482 aa		13.79	□□□□□ -0.2
PTP1	YDL230W	YGR237C	P50089	785 aa		13.79	□□□□□ -0.2
PTP1	YDL230W	ASE1	P50275	885 aa		13.79	□□□□□ -0.2
PTP1	YDL230W	RTC4	P53850	401 aa		13.79	□□□□□ -0.2
PTP1	YDL230W	HOS3	Q02959	697 aa	Known RBP	13.79	□□□□□ -0.2
PTP1	YDL230W	HIR1	P32479	840 aa		13.78	□□□□□ -0.2
PTP1	YDL230W	YET1	P35723	206 aa		13.78	□□□□□ -0.2
PTP1	YDL230W	RTT107	P38850	1070 aa		13.78	□□□□□ -0.2
PTP1	YDL230W	YER156C	P40093	338 aa	Known RBP	13.78	□□□□□ -0.2
PTP1	YDL230W	DAK2	P43550	591 aa		13.78	□□□□□ -0.2
PTP1	YDL230W	MSH3	P25336	1018 aa		13.77	□□□□□ -0.21
PTP1	YDL230W	PCH2	P38126	564 aa		13.77	□□□□□ -0.21
PTP1	YDL230W	YJL171C	P46992	396 aa		13.77	□□□□□ -0.21
PTP1	YDL230W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	13.77	□□□□□ -0.21	not detected
PTP1	YDL230W	UBA2	P52488	636 aa		13.77	□□□□□ -0.21
PTP1	YDL230W	SKG3	Q06315	1026 aa		13.77	□□□□□ -0.21
PTP1	YDL230W	YDL124W	Q07551	312 aa	Known RBP	13.77	□□□□□ -0.21
PTP1	YDL230W	CLF1	Q12309	687 aa	Predicted RBP	13.77	□□□□□ -0.21
PTP1	YDL230W	CDC37	P06101	506 aa	Known RBP	13.76	□□□□□ -0.21
PTP1	YDL230W	SAM2	P19358	384 aa	Known RBP	13.76	□□□□□ -0.21
PTP1	YDL230W	SEC65	P29478	273 aa		13.76	□□□□□ -0.21
PTP1	YDL230W	ERG7	P38604	731 aa		13.76	□□□□□ -0.21
PTP1	YDL230W	CCT3	P39077	534 aa	Known RBP	13.76	□□□□□ -0.21
PTP1	YDL230W	YGR153W	P48238	217 aa		13.76	□□□□□ -0.21
PTP1	YDL230W	SDA1	P53313	767 aa	Known RBP	13.76	□□□□□ -0.21
PTP1	YDL230W	RET3	P53600	189 aa		13.76	□□□□□ -0.21
PTP1	YDL230W	SUE1	Q06524	206 aa		13.76	□□□□□ -0.21
PTP1	YDL230W	SLK19	Q08581	821 aa	Known RBP	13.76	□□□□□ -0.21
PTP1	YDL230W	PHO13	P19881	312 aa		13.75	□□□□□ -0.21
PTP1	YDL230W	PSO2	P30620	661 aa		13.75	□□□□□ -0.21
PTP1	YDL230W	PXL1	P36166	706 aa		13.75	□□□□□ -0.21
PTP1	YDL230W	LEO1	P38439	464 aa		13.75	□□□□□ -0.21
PTP1	YDL230W	CIT3	P43635	486 aa		13.75	□□□□□ -0.21
PTP1	YDL230W	MTC3	P53077	123 aa		13.75	□□□□□ -0.21
PTP1	YDL230W	DSE4	P53753	1117 aa		13.75	□□□□□ -0.21
PTP1	YDL230W	SHM1	P37292	490 aa	Predicted RBP	13.74	□□□□□ -0.21
PTP1	YDL230W	STV1	P37296	890 aa		13.74	□□□□□ -0.21
PTP1	YDL230W	YBL028C	P38202	106 aa		13.74	□□□□□ -0.21
PTP1	YDL230W	SEN54	Q02825	467 aa	Predicted RBP	13.74	□□□□□ -0.21
PTP1	YDL230W	TLG2	Q08144	397 aa		13.74	□□□□□ -0.21
PTP1	YDL230W	RRP43	P25359	394 aa	Predicted RBP	13.73	□□□□□ -0.21
PTP1	YDL230W	ADP1	P25371	1049 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	MRC1	P25588	1096 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	SAP190	P36123	1033 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	PET10	P36139	283 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	BCD1	P38772	366 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	SPT8	P38915	602 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	UTP7	P40055	554 aa	Known RBP	13.73	□□□□□ -0.21
PTP1	YDL230W	ATG32	P40458	529 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	EBS1	Q03466	884 aa	Known RBP	13.73	□□□□□ -0.21
PTP1	YDL230W	ADY4	Q05955	493 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	YCG1	Q06680	1035 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	YOL075C	Q08234	1294 aa		13.73	□□□□□ -0.21
PTP1	YDL230W	RPS6A	P0CX37	236 aa	Known RBP	13.72	□□□□□ -0.21
PTP1	YDL230W	RPS6B	P0CX38	236 aa	Predicted RBP	13.72	□□□□□ -0.21
PTP1	YDL230W	SPC110	P32380	944 aa		13.72	□□□□□ -0.21
PTP1	YDL230W	SAS3	P34218	831 aa		13.72	□□□□□ -0.21
PTP1	YDL230W	VPS45	P38932	577 aa		13.72	□□□□□ -0.21
PTP1	YDL230W	SHC1	P39000	512 aa		13.72	□□□□□ -0.21
PTP1	YDL230W	BNI5	P53890	448 aa	Known RBP	13.72	□□□□□ -0.21
PTP1	YDL230W	SPP382	Q06411	708 aa	Predicted RBP	13.72	□□□□□ -0.21
PTP1	YDL230W	KIN1	P13185	1064 aa		13.71	□□□□□ -0.21
PTP1	YDL230W	UBP9	P39967	754 aa		13.71	□□□□□ -0.21
PTP1	YDL230W	AIP1	P46680	615 aa	Known RBP	13.71	□□□□□ -0.21
PTP1	YDL230W	YPL216W	Q08964	1102 aa		13.71	□□□□□ -0.21
PTP1	YDL230W	TUS1	Q06412	1307 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	PET123	P17558	318 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	CST26	P38226	397 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	CTM1	P38818	585 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	CEP3	P40969	608 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	THI6	P41835	540 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	VPS4	P52917	437 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	TRM44	Q02648	567 aa	Known RBP	13.7	□□□□□ -0.22
PTP1	YDL230W	SFI1	Q12369	946 aa		13.7	□□□□□ -0.22
PTP1	YDL230W	GAP1	P19145	602 aa	Predicted RBP	13.69	□□□□□ -0.22
PTP1	YDL230W	ORC6	P38826	435 aa		13.69	□□□□□ -0.22
PTP1	YDL230W	YGR273C	P53329	174 aa		13.69	□□□□□ -0.22
PTP1	YDL230W	CSM3	Q04659	317 aa		13.69	□□□□□ -0.22
PTP1	YDL230W	COG4	Q06096	861 aa		13.69	□□□□□ -0.22
PTP1	YDL230W	VIP1	Q06685	1146 aa	Known RBP	13.69	□□□□□ -0.22
PTP1	YDL230W	LAP2	Q10740	671 aa		13.69	□□□□□ -0.22
PTP1	YDL230W	ATG9	Q12142	997 aa		13.69	□□□□□ -0.22
PTP1	YDL230W	PMA1	P05030	918 aa	Known RBP	13.68	□□□□□ -0.22
PTP1	YDL230W	RPC25	P35718	212 aa		13.68	□□□□□ -0.22
PTP1	YDL230W	MIP6	P38760	659 aa	Known RBP	13.68	□□□□□ -0.22
PTP1	YDL230W	NDT80	P38830	627 aa		13.68	□□□□□ -0.22
PTP1	YDL230W	VTC2	P43585	828 aa		13.68	□□□□□ -0.22
PTP1	YDL230W	AIM33	Q04516	312 aa		13.68	□□□□□ -0.22
PTP1	YDL230W	CRF1	Q04930	467 aa		13.68	□□□□□ -0.22
PTP1	YDL230W	TUB2	P02557	457 aa	Known RBP	13.67	□□□□□ -0.22
PTP1	YDL230W	FYV8	P46949	817 aa	Known RBP	13.67	□□□□□ -0.22
PTP1	YDL230W	FOB1	O13329	566 aa		13.66	□□□□□ -0.22
PTP1	YDL230W	RPL8A	P17076	256 aa	Known RBP	13.66	□□□□□ -0.22
PTP1	YDL230W	MSM1	P22438	575 aa		13.66	□□□□□ -0.22
PTP1	YDL230W	SPO11	P23179	398 aa		13.66	□□□□□ -0.22
PTP1	YDL230W	SPT21	P35209	758 aa		13.66	□□□□□ -0.22
PTP1	YDL230W	KEL1	P38853	1164 aa	Known RBP	13.66	□□□□□ -0.22

Retrieved 100 of 5,963 RNA–protein pairs in 61.9 ms