RNA–Protein interactions for RNA: YNR006W

VPS27, Transcript of Endosomal protein that forms a complex with Hse1p, yeast

Gene VPS27, Length 1,869 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS27	YNR006W	YBR287W	P38355	427 aa		4.88	□□□□□ -1.63
VPS27	YNR006W	OSH7	P38755	437 aa		4.88	□□□□□ -1.63
VPS27	YNR006W	AIM46	P38885	310 aa		4.88	□□□□□ -1.63
VPS27	YNR006W	YNR029C	P53729	429 aa	Known RBP	4.88	□□□□□ -1.63
VPS27	YNR006W	COB	P00163	385 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	CCP1	P00431	361 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	FLP1	P03870	423 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	MRPL16	P38064	232 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	APM2	P38700	605 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	YIL165C	P40446	119 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	NAM8	Q00539	523 aa	Known RBP	4.87	□□□□□ -1.63
VPS27	YNR006W	ECM16	Q04217	1267 aa	Known RBP	4.87	□□□□□ -1.63
VPS27	YNR006W	DAL4	Q04895	635 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	YLR346C	Q06139	101 aa		4.87	□□□□□ -1.63
VPS27	YNR006W	MRC1	P25588	1096 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	RAD27	P26793	382 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	STE5	P32917	917 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	GLY1	P37303	387 aa	Known RBP	4.86	□□□□□ -1.63
VPS27	YNR006W	FUI1	P38196	639 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	MRPS18	P42847	217 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	PEX8	P53248	589 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
VPS27	YNR006W	MCD1	Q12158	566 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	TY1A-BL	Q12266	440 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	RPA135	P22138	1203 aa	Known RBP	4.86	□□□□□ -1.63
VPS27	YNR006W	VMA4	P22203	233 aa	Known RBP	4.86	□□□□□ -1.63
VPS27	YNR006W	GCR2	Q01722	534 aa		4.86	□□□□□ -1.63
VPS27	YNR006W	UGA4	P32837	571 aa		4.85	□□□□□ -1.63
VPS27	YNR006W	PRP40	P33203	583 aa	Known RBP	4.85	□□□□□ -1.63
VPS27	YNR006W	DUR3	P33413	735 aa		4.85	□□□□□ -1.63
VPS27	YNR006W	VPS24	P36095	224 aa	Known RBP	4.85	□□□□□ -1.63
VPS27	YNR006W	BOI2	P39969	1040 aa		4.85	□□□□□ -1.63
VPS27	YNR006W	YPL109C	Q02981	657 aa		4.85	□□□□□ -1.63
VPS27	YNR006W	SVL3	Q03088	825 aa	Known RBP	4.85	□□□□□ -1.63
VPS27	YNR006W	YCS4	Q06156	1176 aa		4.85	□□□□□ -1.63
VPS27	YNR006W	ADR1	P07248	1323 aa		4.84	□□□□□ -1.63
VPS27	YNR006W	KAR1	P11927	433 aa		4.84	□□□□□ -1.63
VPS27	YNR006W	RPL8A	P17076	256 aa	Known RBP	4.84	□□□□□ -1.63
VPS27	YNR006W	GAL11	P19659	1081 aa		4.84	□□□□□ -1.63
VPS27	YNR006W	PWP2	P25635	923 aa	Known RBP	4.84	□□□□□ -1.63
VPS27	YNR006W	PYC2	P32327	1180 aa	Known RBP	4.84	□□□□□ -1.63
VPS27	YNR006W	CDC11	P32458	415 aa		4.84	□□□□□ -1.63
VPS27	YNR006W	PIC2	P40035	300 aa		4.84	□□□□□ -1.63
VPS27	YNR006W	EEB1	Q02891	456 aa		4.84	□□□□□ -1.63
VPS27	YNR006W	NTG2	Q08214	380 aa		4.84	□□□□□ -1.63
VPS27	YNR006W	MCM5	P29496	775 aa	Known RBP	4.83	□□□□□ -1.64
VPS27	YNR006W	SCW11	P53189	542 aa		4.83	□□□□□ -1.64
VPS27	YNR006W	YOR378W	Q08902	515 aa		4.83	□□□□□ -1.64
VPS27	YNR006W	FAL1	Q12099	399 aa	Known RBP	4.83	□□□□□ -1.64
VPS27	YNR006W	CAN1	P04817	590 aa		4.83	□□□□□ -1.64
VPS27	YNR006W	GCR1	P07261	785 aa		4.83	□□□□□ -1.64
VPS27	YNR006W	NCL1	P38205	684 aa	Known RBP	4.83	□□□□□ -1.64
VPS27	YNR006W	YBR184W	P38299	523 aa		4.83	□□□□□ -1.64
VPS27	YNR006W	MSH6	Q03834	1242 aa		4.83	□□□□□ -1.64
VPS27	YNR006W	BRE1	Q07457	700 aa	Known RBP	4.83	□□□□□ -1.64
VPS27	YNR006W	THS1	P04801	734 aa	Known RBP	4.82	□□□□□ -1.64
VPS27	YNR006W	MSH2	P25847	964 aa		4.82	□□□□□ -1.64
VPS27	YNR006W	YER156C	P40093	338 aa	Known RBP	4.82	□□□□□ -1.64
VPS27	YNR006W	NUT1	P53114	1132 aa		4.82	□□□□□ -1.64
VPS27	YNR006W	YGR125W	P53273	1036 aa		4.82	□□□□□ -1.64
VPS27	YNR006W	TMA64	Q04600	565 aa	Known RBP	4.82	□□□□□ -1.64
VPS27	YNR006W	IDI1	P15496	288 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	BAS1	P22035	811 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	TRX2	P22803	104 aa	Known RBP	4.81	□□□□□ -1.64
VPS27	YNR006W	RPL8B	P29453	256 aa	Known RBP	4.81	□□□□□ -1.64
VPS27	YNR006W	MON1	P53129	644 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	CEF1	Q03654	590 aa	Predicted RBP	4.81	□□□□□ -1.64
VPS27	YNR006W	ESC2	Q06340	456 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	RTT10	Q08924	1013 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	DIT1	P21623	536 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	MET22	P32179	357 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	MSC7	P38694	644 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	ROG3	P43602	733 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	YJR120W	P47157	116 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	GNP1	P48813	663 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	ADI1	Q03677	179 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	LCB5	Q06147	687 aa	Known RBP	4.81	□□□□□ -1.64
VPS27	YNR006W	FMP25	Q08023	583 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	NKP1	Q12493	238 aa		4.81	□□□□□ -1.64
VPS27	YNR006W	CIT1	P00890	479 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	RPP1A	P05318	106 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS27	YNR006W	ECM2	P38241	364 aa	Known RBP	4.8	□□□□□ -1.64
VPS27	YNR006W	SAP155	P43612	1002 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	PFD1	P46988	109 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	PPT1	P53043	513 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	RTA1	P53047	317 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	CUZ1	P53899	274 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	ULP1	Q02724	621 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	TY1A-MR1	Q04215	440 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	ATG13	Q06628	738 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	TMA17	Q12513	150 aa		4.8	□□□□□ -1.64
VPS27	YNR006W	RIM11	P38615	370 aa		4.79	□□□□□ -1.64
VPS27	YNR006W	GGA2	P38817	585 aa	Known RBP	4.79	□□□□□ -1.64
VPS27	YNR006W	ERP2	P39704	215 aa		4.79	□□□□□ -1.64
VPS27	YNR006W	HEH2	Q03281	663 aa		4.79	□□□□□ -1.64
VPS27	YNR006W	YDR444W	Q04093	687 aa		4.79	□□□□□ -1.64
VPS27	YNR006W	KAR2	P16474	682 aa	Known RBP	4.79	□□□□□ -1.64
VPS27	YNR006W	RVS167	P39743	482 aa	Known RBP	4.79	□□□□□ -1.64
VPS27	YNR006W	SNF7	P39929	240 aa	Known RBP	4.79	□□□□□ -1.64
VPS27	YNR006W	TY4A-J	P47023	414 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 61.3 ms