RNA–Protein interactions for RNA: YMR128W

ECM16, Transcript of Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP, yeastyeast

Gene ECM16, Length 3,804 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ECM16YMR128W RDS1P25611 832 aa4.38□□□□□ -1.71
ECM16YMR128W LTV1P34078 463 aa4.38□□□□□ -1.71
ECM16YMR128W CCT5P40413 562 aaKnown RBP4.38□□□□□ -1.71
ECM16YMR128W ALO1P54783 526 aaKnown RBP4.38□□□□□ -1.71
ECM16YMR128W ECM21P38167 1117 aaKnown RBP4.38□□□□□ -1.71
ECM16YMR128W RPA14P50106 137 aa4.38□□□□□ -1.71
ECM16YMR128W SRC1Q03707 834 aa4.38□□□□□ -1.71
ECM16YMR128W SFI1Q12369 946 aa4.38□□□□□ -1.71
ECM16YMR128W PBY1P38254 753 aa4.38□□□□□ -1.71
ECM16YMR128W STU2P46675 888 aa4.38□□□□□ -1.71
ECM16YMR128W FPR4Q06205 392 aaPredicted RBP4.38□□□□□ -1.71
ECM16YMR128W AOS1Q06624 347 aa4.38□□□□□ -1.71
ECM16YMR128W RTG1P32607 177 aa4.37□□□□□ -1.71
ECM16YMR128W NUP133P36161 1157 aa4.37□□□□□ -1.71
ECM16YMR128W CIN4P39110 191 aa4.37□□□□□ -1.71
ECM16YMR128W HGH1P48362 394 aaKnown RBP4.37□□□□□ -1.71
ECM16YMR128W ALE1Q08548 619 aa4.37□□□□□ -1.71
ECM16YMR128W YBL113CQ7M4S9 792 aa4.37□□□□□ -1.71
ECM16YMR128W GPA1P08539 472 aa4.37□□□□□ -1.71
ECM16YMR128W ELM1P32801 640 aa4.37□□□□□ -1.71
ECM16YMR128W YER130CP39959 443 aa4.37□□□□□ -1.71
ECM16YMR128W SGD1Q06132 899 aa4.37□□□□□ -1.71
ECM16YMR128W IXR1P33417 597 aa4.36□□□□□ -1.71
ECM16YMR128W MAK10Q02197 733 aa4.36□□□□□ -1.71
ECM16YMR128W YMR196WQ04336 1088 aa4.36□□□□□ -1.71
ECM16YMR128W SRP40P32583 406 aaPredicted RBP4.36□□□□□ -1.71
ECM16YMR128W PDR18P53756 1333 aa4.36□□□□□ -1.71
ECM16YMR128W LPD1P09624 499 aaKnown RBP4.36□□□□□ -1.71
ECM16YMR128W SWE1P32944 819 aa4.36□□□□□ -1.71
ECM16YMR128W GTT3P39996 337 aa4.36□□□□□ -1.71
ECM16YMR128W YJR107WP47145 328 aa4.36□□□□□ -1.71
ECM16YMR128W CTH1P47976 325 aa4.36□□□□□ -1.71
ECM16YMR128W PRP31P49704 494 aaPredicted RBP4.36□□□□□ -1.71
ECM16YMR128W SWI1P09547 1314 aa4.36□□□□□ -1.71
ECM16YMR128W QCR6P00127 147 aa4.35□□□□□ -1.71
ECM16YMR128W PCH2P38126 564 aa4.35□□□□□ -1.71
ECM16YMR128W WAR1Q03631 944 aa4.35□□□□□ -1.71
ECM16YMR128W NOP14Q99207 810 aaKnown RBP4.35□□□□□ -1.71
ECM16YMR128W MAL33P38157 468 aa4.35□□□□□ -1.71
ECM16YMR128W YHL050CP38721 697 aa4.35□□□□□ -1.71
ECM16YMR128W YHR219WP38900 624 aa4.35□□□□□ -1.71
ECM16YMR128W OSW7P43611 510 aa4.35□□□□□ -1.71
ECM16YMR128W MSB3P48566 633 aaPredicted RBP4.35□□□□□ -1.71
ECM16YMR128W BNI4P53858 892 aa4.35□□□□□ -1.71
ECM16YMR128W YEL077CQ3E7X8 1277 aa4.35□□□□□ -1.71
ECM16YMR128W PSY4P38193 441 aa4.34□□□□□ -1.71
ECM16YMR128W APL4Q12028 832 aa4.34□□□□□ -1.71
ECM16YMR128W DDP1Q99321 188 aaKnown RBP4.34□□□□□ -1.71
ECM16YMR128W HEM3P28789 327 aa4.34□□□□□ -1.71
ECM16YMR128W MSH4P40965 878 aaPredicted RBP4.34□□□□□ -1.71
ECM16YMR128W CEP3P40969 608 aa4.34□□□□□ -1.71
ECM16YMR128W NUT2Q06213 157 aa4.34□□□□□ -1.71
ECM16YMR128W CBC2Q08920 208 aaKnown RBP RIP-Chip data4.34□□□□□ -1.71not detected
ECM16YMR128W YKL068W-AQ3E826 78 aa4.34□□□□□ -1.71
ECM16YMR128W KCC4P25389 1037 aa4.34□□□□□ -1.72
ECM16YMR128W CIC1P38779 376 aaKnown RBP4.34□□□□□ -1.72
ECM16YMR128W UBP12P39538 1254 aa4.34□□□□□ -1.72
ECM16YMR128W YGL242CP53066 181 aa4.34□□□□□ -1.72
ECM16YMR128W DNM1P54861 757 aa4.34□□□□□ -1.72
ECM16YMR128W YML082WQ04533 649 aaKnown RBP4.34□□□□□ -1.72
ECM16YMR128W NSE3Q05541 303 aa4.34□□□□□ -1.72
ECM16YMR128W MCM4P30665 933 aaKnown RBP4.33□□□□□ -1.72
ECM16YMR128W UBX7P38349 436 aa4.33□□□□□ -1.72
ECM16YMR128W TCD1P38756 429 aa4.33□□□□□ -1.72
ECM16YMR128W RRD1P40454 393 aaKnown RBP4.33□□□□□ -1.72
ECM16YMR128W SMC3P47037 1230 aa4.33□□□□□ -1.72
ECM16YMR128W FCP1Q03254 732 aa4.33□□□□□ -1.72
ECM16YMR128W YPQ2Q06328 317 aa4.33□□□□□ -1.72
ECM16YMR128W TLG2Q08144 397 aa4.33□□□□□ -1.72
ECM16YMR128W INP54Q08227 384 aaKnown RBP4.33□□□□□ -1.72
ECM16YMR128W UBP1P25037 809 aa4.33□□□□□ -1.72
ECM16YMR128W UGA3P26370 528 aa4.33□□□□□ -1.72
ECM16YMR128W MED8P38304 223 aa4.33□□□□□ -1.72
ECM16YMR128W GYL1Q04322 720 aa4.33□□□□□ -1.72
ECM16YMR128W PHO87P25360 923 aa4.33□□□□□ -1.72
ECM16YMR128W APL2P36000 726 aaPredicted RBP4.33□□□□□ -1.72
ECM16YMR128W HXT5P38695 592 aa4.33□□□□□ -1.72
ECM16YMR128W ECM1P39715 212 aa4.33□□□□□ -1.72
ECM16YMR128W YGL140CP53120 1219 aa4.33□□□□□ -1.72
ECM16YMR128W YDL129WQ07555 291 aa4.33□□□□□ -1.72
ECM16YMR128W YPL150WQ12152 901 aa4.33□□□□□ -1.72
ECM16YMR128W UTP10P42945 1769 aaKnown RBP4.33□□□□□ -1.72
ECM16YMR128W GSY2P27472 705 aa4.32□□□□□ -1.72
ECM16YMR128W GDT1P38301 280 aaPredicted RBP4.32□□□□□ -1.72
ECM16YMR128W PPX1P38698 397 aa4.32□□□□□ -1.72
ECM16YMR128W JSN1P47135 1091 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
ECM16YMR128W PEX14P53112 341 aa4.32□□□□□ -1.72
ECM16YMR128W ELP4Q02884 456 aaKnown RBP4.32□□□□□ -1.72
ECM16YMR128W SPP1Q03012 353 aa4.32□□□□□ -1.72
ECM16YMR128W YMR102CQ03177 834 aa4.32□□□□□ -1.72
ECM16YMR128W BRE1Q07457 700 aaKnown RBP4.32□□□□□ -1.72
ECM16YMR128W ELG1Q12050 791 aa4.32□□□□□ -1.72
ECM16YMR128W RRP43P25359 394 aaPredicted RBP4.32□□□□□ -1.72
ECM16YMR128W RFC5P38251 354 aa4.32□□□□□ -1.72
ECM16YMR128W NOC2P39744 710 aaKnown RBP4.32□□□□□ -1.72
ECM16YMR128W SAP1P39955 897 aaKnown RBP4.32□□□□□ -1.72
ECM16YMR128W KTR7P40504 517 aa4.32□□□□□ -1.72
ECM16YMR128W VPS60Q03390 229 aa4.32□□□□□ -1.72
ECM16YMR128W VPS64Q03944 604 aa4.32□□□□□ -1.72
ECM16YMR128W TMA16Q08687 178 aa4.32□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 33.1 ms