RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Cavin4A2AMM0 362 aa21■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Aldh8a1Q8BH00 487 aa21■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Cep170bQ80U49 1574 aa21■□□□□ 0.95
Ctcf-201ENSMUST00000005841 PtprmP28828 1452 aa21■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Anapc15-psA0A140T8L6 141 aa21■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Phf23Q8BSN5 401 aa21■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Ankrd44B2RXR6 993 aa20.99■□□□□ 0.95
Ctcf-201ENSMUST00000005841 MvpQ9EQK5 861 aa20.99■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Ptch1Q61115 1434 aa20.99■□□□□ 0.95
Ctcf-201ENSMUST00000005841 AglF8VPN4 1532 aa20.99■□□□□ 0.95
Ctcf-201ENSMUST00000005841 1700010I14RikQ7TPG0 532 aa20.99■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Fez1Q8K0X8 392 aa20.99■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Kif1aP33173 1695 aa20.99■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Qser1A2BIE1 1698 aa20.98■□□□□ 0.95
Ctcf-201ENSMUST00000005841 U2af1Q9D883 239 aaKnown RBP20.98■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Atp10aO54827 1508 aa20.97■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Rasa1E9PYG6 1038 aa20.97■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Vamp4O70480 141 aa20.97■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Cnga1P29974 684 aa20.97■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Trim27Q62158 513 aa20.97■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Ppp6r3Q922D4 844 aa20.97■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Trim44Q9QXA7 346 aa20.97■□□□□ 0.95
Ctcf-201ENSMUST00000005841 MarsQ68FL6 902 aaKnown RBP20.96■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Trim28Q62318 834 aa20.96■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Inpp5bQ8K337 993 aa20.95■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Plekhm2Q80TQ5 1018 aa20.95■□□□□ 0.94
Ctcf-201ENSMUST00000005841 4930407I10RikD3Z5T8 1512 aa20.95■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Nwd1A6H603 1563 aa20.95■□□□□ 0.94
Ctcf-201ENSMUST00000005841 4931400O07RikQ9D4M5 137 aa20.95■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Gzf1Q4VBD9 706 aa20.94■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Alpk3Q924C5 1678 aa20.94■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Ccdc60Q8C4J0 545 aa20.94■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Rbm10Q99KG3 930 aaKnown RBP20.94■□□□□ 0.94
Ctcf-201ENSMUST00000005841 CarsQ9ER72 831 aaKnown RBP20.94■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Elp1Q7TT37 1333 aaKnown RBP20.94■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Kif3bQ61771 747 aa20.93■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Rps6ka5Q8C050 863 aa20.93■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Cyp27a1Q9DBG1 533 aa20.93■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Casq1O09165 405 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Zfp91Q62511 572 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Slc52a2Q9D8F3 450 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Zscan25B2RX31 543 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Erich6D3Z6S9 713 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Chrna2Q91X60 512 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 G3bp1P97855 465 aaKnown RBP20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Kdm4aQ8BW72 1064 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Trim26Q99PN3 545 aa20.92■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Dip2aQ8BWT5 1523 aa20.91■□□□□ 0.94
Ctcf-201ENSMUST00000005841 VgfQ0VGU4 617 aa20.91■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Igf1rQ60751 1373 aa20.91■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Pank2Q3U4S0 443 aa20.91■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Polr3glQ8R0C0 218 aa20.91■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Gli2Q0VGT2 1544 aa20.9■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Stk24Q99KH8 431 aa20.9■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Nek4Q9Z1J2 792 aa20.9■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Nucb1Q02819 459 aaKnown RBP20.89■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Mindy4Q3UQI9 744 aa20.89■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Fchsd2Q3USJ8 740 aa20.89■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Zkscan1Q8BGS3 561 aaKnown RBP20.89■□□□□ 0.94
Ctcf-201ENSMUST00000005841 Cavin2Q63918 418 aaKnown RBP20.88■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Tbc1d31Q6NXY1 996 aa20.88■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Nutm1Q8BHP2 1126 aa20.87■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Ush1cQ9ES64 910 aa20.87■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Aldh1l2Q8K009 923 aa20.86■□□□□ 0.93
Ctcf-201ENSMUST00000005841 CenpjQ569L8 1344 aa20.86■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Tm6sf1P58749 370 aa20.86■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Ppip5k2Q6ZQB6 1129 aa20.86■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Arfgef2A2A5R2 1792 aa20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Itsn1Q9Z0R4 1714 aa20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Vwa3bJ9JI28 736 aa20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Pdia3P27773 505 aaKnown RBP20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Dhx30Q99PU8 1217 aaKnown RBP20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Znf330Q922H9 316 aa20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Kif24Q6NWW5 1356 aa20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 NinlQ6ZQ12 1394 aa20.85■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Gys2Q8VCB3 704 aa20.84■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Med1Q925J9 1575 aa20.83■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Swt1Q9DBQ9 907 aa20.83■□□□□ 0.93
Ctcf-201ENSMUST00000005841 RereQ80TZ9 1558 aa20.83■□□□□ 0.93
Ctcf-201ENSMUST00000005841 Ap3b2Q9JME5 1082 aa20.83■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Anp32cQ64G17 123 aa20.83■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Slc12a5Q91V14 1138 aa20.82■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Cdc37l1Q9CZP7 335 aa20.82■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Plekhg1F6S200 1446 aa20.82■□□□□ 0.92
Ctcf-201ENSMUST00000005841 NalcnQ8BXR5 1738 aa20.81■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Mrps27Q8BK72 415 aaKnown RBP20.81■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Kank4Q6P9J5 1016 aa20.8■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Gcc1Q9D4H2 778 aa20.8■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Zranb1Q7M760 708 aa20.8■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Dnajc14Q921R4 703 aa20.8■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Myo5bP21271 1818 aa20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Stag3O70576 1240 aa20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Os9Q8K2C7 672 aa20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Cgnl1Q6AW69 1298 aa20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Rcan3Q9JKK0 239 aa20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Ythdc2B2RR83 1445 aaKnown RBP20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Ahdc1Q6PAL7 1594 aaKnown RBP20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 FanclQ9CR14 375 aa20.79■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Wdr78E9PYY5 807 aa20.78■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Becn1O88597 448 aa20.78■□□□□ 0.92
Retrieved 100 of 22,080 RNA–protein pairs in 12.5 ms