RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 NischQ80TM9 1593 aa31.34■■■□□ 2.61
Ctcf-201ENSMUST00000005841 Gm35339A0A140LHH9 1649 aa31.12■■■□□ 2.57
Ctcf-201ENSMUST00000005841 Abcc9P70170 1546 aa30.72■■■□□ 2.51
Ctcf-201ENSMUST00000005841 Rtl1Q7M732 1744 aa30.37■■■□□ 2.45
Ctcf-201ENSMUST00000005841 Ccdc180J3QNE4 1664 aa29.77■■■□□ 2.36
Ctcf-201ENSMUST00000005841 Abcc8B2RUS7 1588 aa29.73■■■□□ 2.35
Ctcf-201ENSMUST00000005841 Zcchc6Q5BLK4 1491 aaKnown RBP29.17■■■□□ 2.26
Ctcf-201ENSMUST00000005841 Rpgrip1Q9EPQ2 1331 aa29.14■■■□□ 2.26
Ctcf-201ENSMUST00000005841 Rhox8Q6VSS7 320 aa28.63■■■□□ 2.17
Ctcf-201ENSMUST00000005841 Acin1Q9JIX8 1338 aaKnown RBP28.44■■■□□ 2.14
Ctcf-201ENSMUST00000005841 Dcaf1Q80TR8 1506 aa28.29■■■□□ 2.12
Ctcf-201ENSMUST00000005841 HrcG5E8J6 738 aa27.91■■■□□ 2.06
Ctcf-201ENSMUST00000005841 Pcgf6Q99NA9 353 aa27.67■■■□□ 2.02
Ctcf-201ENSMUST00000005841 Rb1cc1Q9ESK9 1588 aa27.51■■□□□ 1.99
Ctcf-201ENSMUST00000005841 Trim41Q5NCC3 630 aa27.51■■□□□ 1.99
Ctcf-201ENSMUST00000005841 ScribQ80U72 1612 aa27.5■■□□□ 1.99
Ctcf-201ENSMUST00000005841 Baz1aO88379 1555 aa27.3■■□□□ 1.96
Ctcf-201ENSMUST00000005841 Ehmt2Q9Z148 1263 aaKnown RBP27.17■■□□□ 1.94
Ctcf-201ENSMUST00000005841 Cep164Q5DU05 1446 aa26.98■■□□□ 1.91
Ctcf-201ENSMUST00000005841 Smarca2Q6DIC0 1577 aa26.91■■□□□ 1.9
Ctcf-201ENSMUST00000005841 Kdm5dQ62240 1548 aa26.9■■□□□ 1.9
Ctcf-201ENSMUST00000005841 Supt5hO55201 1082 aaKnown RBP26.89■■□□□ 1.9
Ctcf-201ENSMUST00000005841 Crybg2B7ZCC2 1516 aa26.81■■□□□ 1.88
Ctcf-201ENSMUST00000005841 Neurod1Q60867 357 aa26.67■■□□□ 1.86
Ctcf-201ENSMUST00000005841 Ccdc136Q3TVA9 1136 aa26.66■■□□□ 1.86
Ctcf-201ENSMUST00000005841 NacadQ5SWP3 1504 aa26.45■■□□□ 1.83
Ctcf-201ENSMUST00000005841 Rsf1E9PWW9 1441 aaKnown RBP26.34■■□□□ 1.81
Ctcf-201ENSMUST00000005841 NefmP08553 848 aa26.08■■□□□ 1.77
Ctcf-201ENSMUST00000005841 Ccdc88bQ4QRL3 1481 aa26.06■■□□□ 1.76
Ctcf-201ENSMUST00000005841 Anks4bQ8K3X6 423 aa26.03■■□□□ 1.76
Ctcf-201ENSMUST00000005841 Sall2Q9QX96 1004 aa26.03■■□□□ 1.76
Ctcf-201ENSMUST00000005841 Chic1Q8CBW7 227 aa26.02■■□□□ 1.76
Ctcf-201ENSMUST00000005841 Top2bQ64511 1612 aa26■■□□□ 1.75
Ctcf-201ENSMUST00000005841 1700123L14RikQ3V2K7 440 aa25.97■■□□□ 1.75
Ctcf-201ENSMUST00000005841 Mier1Q5UAK0 511 aa25.96■■□□□ 1.75
Ctcf-201ENSMUST00000005841 Sycp2Q9CUU3 1500 aa25.96■■□□□ 1.75
Ctcf-201ENSMUST00000005841 Las1lA2BE28 776 aaKnown RBP25.91■■□□□ 1.74
Ctcf-201ENSMUST00000005841 Golga3P55937 1487 aa25.91■■□□□ 1.74
Ctcf-201ENSMUST00000005841 Synj1Q8CHC4 1574 aa25.83■■□□□ 1.73
Ctcf-201ENSMUST00000005841 Cngb1E1AZ71 1325 aa25.82■■□□□ 1.72
Ctcf-201ENSMUST00000005841 Brd4Q9ESU6 1400 aaKnown RBP25.8■■□□□ 1.72
Ctcf-201ENSMUST00000005841 Cecr2E9Q2Z1 1453 aa25.78■■□□□ 1.72
Ctcf-201ENSMUST00000005841 Zeb1Q64318 1117 aa25.75■■□□□ 1.71
Ctcf-201ENSMUST00000005841 Csrnp3P59055 597 aa25.68■■□□□ 1.7
Ctcf-201ENSMUST00000005841 Rapgef2Q8CHG7 1496 aa25.6■■□□□ 1.69
Ctcf-201ENSMUST00000005841 Aplp2Q06335 707 aa25.54■■□□□ 1.68
Ctcf-201ENSMUST00000005841 Cc2d2aQ8CFW7 1633 aa25.52■■□□□ 1.68
Ctcf-201ENSMUST00000005841 Aebp2Q9Z248 504 aaKnown RBP25.52■■□□□ 1.68
Ctcf-201ENSMUST00000005841 Eif4g1Q6NZJ6 1600 aaKnown RBP25.51■■□□□ 1.67
Ctcf-201ENSMUST00000005841 CftrP26361 1476 aa25.49■■□□□ 1.67
Ctcf-201ENSMUST00000005841 BicraF8VPZ9 1578 aa25.49■■□□□ 1.67
Ctcf-201ENSMUST00000005841 Cttnbp2B9EJA2 1648 aa25.45■■□□□ 1.66
Ctcf-201ENSMUST00000005841 Myt1Q8CFC2 1127 aa25.41■■□□□ 1.66
Ctcf-201ENSMUST00000005841 Top2aQ01320 1528 aaKnown RBP25.39■■□□□ 1.66
Ctcf-201ENSMUST00000005841 Gab3Q8BSM5 595 aa25.38■■□□□ 1.65
Ctcf-201ENSMUST00000005841 ClspnQ80YR7 1315 aa25.36■■□□□ 1.65
Ctcf-201ENSMUST00000005841 Kdm5bQ80Y84 1544 aa25.26■■□□□ 1.63
Ctcf-201ENSMUST00000005841 Ncapd3Q6ZQK0 1506 aa25.25■■□□□ 1.63
Ctcf-201ENSMUST00000005841 Cdk11bP24788 784 aaKnown RBP25.19■■□□□ 1.62
Ctcf-201ENSMUST00000005841 CenpbP27790 599 aa25.17■■□□□ 1.62
Ctcf-201ENSMUST00000005841 Cep162Q6ZQ06 1403 aa25.15■■□□□ 1.62
Ctcf-201ENSMUST00000005841 Nop58Q6DFW4 536 aaKnown RBP25.15■■□□□ 1.62
Ctcf-201ENSMUST00000005841 Fmn1Q05860 1466 aa25.11■■□□□ 1.61
Ctcf-201ENSMUST00000005841 Smarca4Q3TKT4 1613 aaKnown RBP24.96■■□□□ 1.59
Ctcf-201ENSMUST00000005841 TchhA0A0B4J1F9 1599 aa24.93■■□□□ 1.58
Ctcf-201ENSMUST00000005841 TnnQ80Z71 1560 aa24.9■■□□□ 1.58
Ctcf-201ENSMUST00000005841 UbtfP25976 765 aaKnown RBP24.87■■□□□ 1.57
Ctcf-201ENSMUST00000005841 TonslQ6NZL6 1363 aa24.87■■□□□ 1.57
Ctcf-201ENSMUST00000005841 Wdr66E9Q743 1299 aa24.85■■□□□ 1.57
Ctcf-201ENSMUST00000005841 Arap1Q4LDD4 1452 aa24.66■■□□□ 1.54
Ctcf-201ENSMUST00000005841 Arhgap35Q91YM2 1499 aa24.66■■□□□ 1.54
Ctcf-201ENSMUST00000005841 Arhgef5E9Q7D5 1581 aa24.65■■□□□ 1.54
Ctcf-201ENSMUST00000005841 Gm38655A0A286YDK6 273 aa24.64■■□□□ 1.54
Ctcf-201ENSMUST00000005841 NrkQ9R0G8 1455 aa24.63■■□□□ 1.53
Ctcf-201ENSMUST00000005841 Rpap1Q80TE0 1409 aa24.62■■□□□ 1.53
Ctcf-201ENSMUST00000005841 Hnrnpul2Q00PI9 745 aaKnown RBP24.6■■□□□ 1.53
Ctcf-201ENSMUST00000005841 Ppargc1bQ8VHJ7 1014 aa24.6■■□□□ 1.53
Ctcf-201ENSMUST00000005841 Erich3F6QRE9 1637 aa24.57■■□□□ 1.52
Ctcf-201ENSMUST00000005841 Clip1Q922J3 1391 aa24.57■■□□□ 1.52
Ctcf-201ENSMUST00000005841 Ccdc18Q640L5 1455 aa24.56■■□□□ 1.52
Ctcf-201ENSMUST00000005841 Fam71e1A1L3C1 212 aa24.51■■□□□ 1.51
Ctcf-201ENSMUST00000005841 Iqgap2Q3UQ44 1575 aa24.5■■□□□ 1.51
Ctcf-201ENSMUST00000005841 Znf710Q3U288 666 aa24.49■■□□□ 1.51
Ctcf-201ENSMUST00000005841 Tiam1Q60610 1591 aa24.49■■□□□ 1.51
Ctcf-201ENSMUST00000005841 SafbD3YXK2 937 aaKnown RBP24.46■■□□□ 1.51
Ctcf-201ENSMUST00000005841 Esf1Q3V1V3 845 aaKnown RBP24.45■■□□□ 1.5
Ctcf-201ENSMUST00000005841 PtprkP35822 1457 aa24.42■■□□□ 1.5
Ctcf-201ENSMUST00000005841 Tnnt3Q9QZ47 272 aa24.42■■□□□ 1.5
Ctcf-201ENSMUST00000005841 Map3k1P53349 1493 aa24.41■■□□□ 1.5
Ctcf-201ENSMUST00000005841 UacaQ8CGB3 1411 aa24.38■■□□□ 1.49
Ctcf-201ENSMUST00000005841 Bcl11aQ9QYE3 773 aa24.36■■□□□ 1.49
Ctcf-201ENSMUST00000005841 Baz1bQ9Z277 1479 aa24.35■■□□□ 1.49
Ctcf-201ENSMUST00000005841 Plekhg3Q4VAC9 1341 aa24.34■■□□□ 1.49
Ctcf-201ENSMUST00000005841 Eea1Q8BL66 1411 aa24.31■■□□□ 1.48
Ctcf-201ENSMUST00000005841 Lmo7E9PYF4 1699 aaKnown RBP24.3■■□□□ 1.48
Ctcf-201ENSMUST00000005841 Camsap2Q8C1B1 1461 aa24.3■■□□□ 1.48
Ctcf-201ENSMUST00000005841 Ankrd26Q811D2 1581 aa24.28■■□□□ 1.48
Ctcf-201ENSMUST00000005841 Lamc3Q9R0B6 1581 aa24.28■■□□□ 1.48
Ctcf-201ENSMUST00000005841 Camsap1A2AHC3 1581 aa24.27■■□□□ 1.48
Ctcf-201ENSMUST00000005841 DiexfQ8BTT6 772 aaKnown RBP24.25■■□□□ 1.47
Retrieved 100 of 22,080 RNA–protein pairs in 511 ms