RNA–Protein interactions for RNA: YEL027W

VMA3, Transcript of Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase, yeast

Gene VMA3, Length 483 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA3	YEL027W	PEX29	Q03370	554 aa		7.66	□□□□□ -1.18
VMA3	YEL027W	PCL8	Q08966	492 aa		7.66	□□□□□ -1.18
VMA3	YEL027W	FLO1	P32768	1537 aa		7.65	□□□□□ -1.18
VMA3	YEL027W	PBY1	P38254	753 aa		7.65	□□□□□ -1.18
VMA3	YEL027W	PIB2	P53191	635 aa		7.65	□□□□□ -1.18
VMA3	YEL027W	NSG2	P53898	299 aa		7.65	□□□□□ -1.18
VMA3	YEL027W	GCR2	Q01722	534 aa		7.65	□□□□□ -1.18
VMA3	YEL027W	NPL4	P33755	580 aa		7.64	□□□□□ -1.19
VMA3	YEL027W	GRX7	P38068	203 aa		7.64	□□□□□ -1.19
VMA3	YEL027W	BRN1	P38170	754 aa		7.64	□□□□□ -1.19
VMA3	YEL027W	YBL028C	P38202	106 aa		7.64	□□□□□ -1.19
VMA3	YEL027W	MSH4	P40965	878 aa	Predicted RBP	7.64	□□□□□ -1.19
VMA3	YEL027W	SPR3	P41901	512 aa		7.64	□□□□□ -1.19
VMA3	YEL027W	FPR4	Q06205	392 aa	Predicted RBP	7.64	□□□□□ -1.19
VMA3	YEL027W	RIM20	Q12033	661 aa		7.64	□□□□□ -1.19
VMA3	YEL027W	OPI1	P21957	404 aa		7.63	□□□□□ -1.19
VMA3	YEL027W	OCT1	P35999	772 aa		7.63	□□□□□ -1.19
VMA3	YEL027W	GEF1	P37020	779 aa		7.63	□□□□□ -1.19
VMA3	YEL027W	STM1	P39015	273 aa	Known RBP	7.63	□□□□□ -1.19
VMA3	YEL027W	SGD1	Q06132	899 aa		7.63	□□□□□ -1.19
VMA3	YEL027W	KIN1	P13185	1064 aa		7.62	□□□□□ -1.19
VMA3	YEL027W	DLD1	P32891	587 aa		7.62	□□□□□ -1.19
VMA3	YEL027W	AAP1	P37898	856 aa	Known RBP	7.62	□□□□□ -1.19
VMA3	YEL027W	ACA1	P39970	489 aa		7.62	□□□□□ -1.19
VMA3	YEL027W	NET1	P47035	1189 aa		7.62	□□□□□ -1.19
VMA3	YEL027W	SNU71	P53207	620 aa	Known RBP	7.62	□□□□□ -1.19
VMA3	YEL027W	YLR225C	Q05948	407 aa	Known RBP	7.62	□□□□□ -1.19
VMA3	YEL027W	TUB2	P02557	457 aa	Known RBP	7.61	□□□□□ -1.19
VMA3	YEL027W	IOC3	P43596	787 aa		7.61	□□□□□ -1.19
VMA3	YEL027W	BBC1	P47068	1157 aa		7.61	□□□□□ -1.19
VMA3	YEL027W	ENP2	P48234	707 aa	Known RBP	7.61	□□□□□ -1.19
VMA3	YEL027W	YDL124W	Q07551	312 aa	Known RBP	7.61	□□□□□ -1.19
VMA3	YEL027W	KEL3	Q08979	651 aa	Predicted RBP	7.61	□□□□□ -1.19
VMA3	YEL027W	SPT21	P35209	758 aa		7.6	□□□□□ -1.19
VMA3	YEL027W	ERG7	P38604	731 aa		7.6	□□□□□ -1.19
VMA3	YEL027W	YMR147W	P40218	223 aa	Known RBP	7.6	□□□□□ -1.19
VMA3	YEL027W	IRC8	P47046	822 aa		7.6	□□□□□ -1.19
VMA3	YEL027W	PKH3	Q03306	898 aa	Predicted RBP	7.6	□□□□□ -1.19
VMA3	YEL027W	PIB1	Q06651	286 aa		7.6	□□□□□ -1.19
VMA3	YEL027W	TAH18	Q12181	623 aa		7.6	□□□□□ -1.19
VMA3	YEL027W	TPM1	P17536	199 aa	Known RBP	7.59	□□□□□ -1.19
VMA3	YEL027W	IXR1	P33417	597 aa		7.59	□□□□□ -1.19
VMA3	YEL027W	MAC1	P35192	417 aa		7.59	□□□□□ -1.19
VMA3	YEL027W	HXT13	P39924	564 aa		7.59	□□□□□ -1.19
VMA3	YEL027W	YIR014W	P40570	242 aa		7.59	□□□□□ -1.19
VMA3	YEL027W	LYS14	P40971	790 aa		7.59	□□□□□ -1.19
VMA3	YEL027W	HXT17	P53631	564 aa		7.59	□□□□□ -1.19
VMA3	YEL027W	KAR5	Q04746	504 aa		7.59	□□□□□ -1.19
VMA3	YEL027W	MPH3	P0CE00	602 aa		7.58	□□□□□ -1.2
VMA3	YEL027W	YDJ1	P25491	409 aa	Known RBP	7.58	□□□□□ -1.2
VMA3	YEL027W	MCD4	P36051	919 aa		7.58	□□□□□ -1.2
VMA3	YEL027W	MET1	P36150	593 aa		7.58	□□□□□ -1.2
VMA3	YEL027W	CST26	P38226	397 aa		7.58	□□□□□ -1.2
VMA3	YEL027W	VAB2	P40003	282 aa		7.58	□□□□□ -1.2
VMA3	YEL027W	SUB2	Q07478	446 aa	Known RBP	7.58	□□□□□ -1.2
VMA3	YEL027W	YPL260W	Q08977	551 aa		7.58	□□□□□ -1.2
VMA3	YEL027W	CFT2	Q12102	859 aa	Predicted RBP	7.58	□□□□□ -1.2
VMA3	YEL027W	LAM4	P38800	1345 aa		7.57	□□□□□ -1.2
VMA3	YEL027W	PAM1	P37304	830 aa	Known RBP	7.57	□□□□□ -1.2
VMA3	YEL027W	SSF2	Q12153	453 aa	Predicted RBP	7.57	□□□□□ -1.2
VMA3	YEL027W	FBP1	P09201	348 aa		7.56	□□□□□ -1.2
VMA3	YEL027W	PRE8	P23639	250 aa		7.56	□□□□□ -1.2
VMA3	YEL027W	CDC60	P26637	1090 aa	Known RBP	7.56	□□□□□ -1.2
VMA3	YEL027W	ATG1	P53104	897 aa		7.56	□□□□□ -1.2
VMA3	YEL027W	LAP2	Q10740	671 aa		7.56	□□□□□ -1.2
VMA3	YEL027W	TY3A-G	Q12173	290 aa		7.56	□□□□□ -1.2
VMA3	YEL027W	TY3A-I	Q99219	290 aa		7.56	□□□□□ -1.2
VMA3	YEL027W	ERG12	P07277	443 aa		7.55	□□□□□ -1.2
VMA3	YEL027W	SRM1	P21827	482 aa		7.55	□□□□□ -1.2
VMA3	YEL027W	RRP8	P38961	392 aa	Known RBP	7.55	□□□□□ -1.2
VMA3	YEL027W	SLN1	P39928	1220 aa	Predicted RBP	7.55	□□□□□ -1.2
VMA3	YEL027W	PSF2	P40359	213 aa		7.55	□□□□□ -1.2
VMA3	YEL027W	COQ1	P18900	473 aa		7.54	□□□□□ -1.2
VMA3	YEL027W	PER1	P25625	357 aa		7.54	□□□□□ -1.2
VMA3	YEL027W	SPB4	P25808	606 aa	Predicted RBP	7.54	□□□□□ -1.2
VMA3	YEL027W	PAH1	P32567	862 aa		7.54	□□□□□ -1.2
VMA3	YEL027W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	7.54	□□□□□ -1.2	not detected
VMA3	YEL027W	RTS1	P38903	757 aa		7.54	□□□□□ -1.2
VMA3	YEL027W	TIF4631	P39935	952 aa	Known RBP	7.54	□□□□□ -1.2
VMA3	YEL027W	SPO22	P40511	975 aa		7.54	□□□□□ -1.2
VMA3	YEL027W	YJL007C	P47080	104 aa		7.54	□□□□□ -1.2
VMA3	YEL027W	TRL1	P09880	827 aa	Known RBP	7.53	□□□□□ -1.2
VMA3	YEL027W	SRS2	P12954	1174 aa		7.53	□□□□□ -1.2
VMA3	YEL027W	KRS1	P15180	591 aa	Known RBP	7.53	□□□□□ -1.2
VMA3	YEL027W	KRI1	P42846	591 aa	Known RBP	7.53	□□□□□ -1.2
VMA3	YEL027W	MRD1	Q06106	887 aa	Known RBP	7.53	□□□□□ -1.2
VMA3	YEL027W	SKG3	Q06315	1026 aa		7.53	□□□□□ -1.2
VMA3	YEL027W	SPN1	Q06505	410 aa	Predicted RBP	7.53	□□□□□ -1.2
VMA3	YEL027W	VPS13	Q07878	3144 aa		7.52	□□□□□ -1.21
VMA3	YEL027W	DIT2	P21595	489 aa		7.52	□□□□□ -1.21
VMA3	YEL027W	YHL050C	P38721	697 aa		7.52	□□□□□ -1.21
VMA3	YEL027W	CIC1	P38779	376 aa	Known RBP	7.52	□□□□□ -1.21
VMA3	YEL027W	CRG1	P38892	291 aa	RIP-Chip data	7.52	□□□□□ -1.21	not detected
VMA3	YEL027W	RPS15	Q01855	142 aa	Known RBP	7.52	□□□□□ -1.21
VMA3	YEL027W	ULP1	Q02724	621 aa		7.52	□□□□□ -1.21
VMA3	YEL027W	YML037C	Q03703	340 aa		7.52	□□□□□ -1.21
VMA3	YEL027W	UBX5	Q06682	500 aa		7.52	□□□□□ -1.21
VMA3	YEL027W	RAD61	Q99359	647 aa		7.52	□□□□□ -1.21
VMA3	YEL027W	RNR2	P09938	399 aa	Known RBP	7.51	□□□□□ -1.21
VMA3	YEL027W	PEP3	P27801	918 aa		7.51	□□□□□ -1.21

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms