RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP1YDL122W BUD20Q08004 166 aaPredicted RBP3.07□□□□□ -1.92
UBP1YDL122W PRT1P06103 763 aaKnown RBP3.07□□□□□ -1.92
UBP1YDL122W KTR4P38131 464 aa3.07□□□□□ -1.92
UBP1YDL122W MVP1P40959 511 aaKnown RBP3.07□□□□□ -1.92
UBP1YDL122W YJL007CP47080 104 aa3.07□□□□□ -1.92
UBP1YDL122W UBP16Q02863 499 aa3.07□□□□□ -1.92
UBP1YDL122W PHM7Q12252 991 aa3.07□□□□□ -1.92
UBP1YDL122W NUD1P32336 851 aa3.06□□□□□ -1.92
UBP1YDL122W OYE3P41816 400 aaPredicted RBP3.06□□□□□ -1.92
UBP1YDL122W STR2P47164 639 aa3.06□□□□□ -1.92
UBP1YDL122W ATG1P53104 897 aa3.06□□□□□ -1.92
UBP1YDL122W SEN54Q02825 467 aaPredicted RBP3.06□□□□□ -1.92
UBP1YDL122W SYF1Q04048 859 aaPredicted RBP3.06□□□□□ -1.92
UBP1YDL122W RAD59Q12223 238 aa3.06□□□□□ -1.92
UBP1YDL122W MDM20Q12387 796 aaKnown RBP3.06□□□□□ -1.92
UBP1YDL122W PBS2P08018 668 aa3.05□□□□□ -1.92
UBP1YDL122W RGR1P19263 1082 aa3.05□□□□□ -1.92
UBP1YDL122W IRE1P32361 1115 aa3.05□□□□□ -1.92
UBP1YDL122W RSC8P43609 557 aaKnown RBP3.05□□□□□ -1.92
UBP1YDL122W ISM1P48526 1002 aa3.05□□□□□ -1.92
UBP1YDL122W RMT2Q03305 412 aa3.05□□□□□ -1.92
UBP1YDL122W BUD27P43573 796 aaKnown RBP RIP-Chip data3.05□□□□□ -1.92not detected
UBP1YDL122W NET1P47035 1189 aa3.05□□□□□ -1.92
UBP1YDL122W HGH1P48362 394 aaKnown RBP3.05□□□□□ -1.92
UBP1YDL122W KIN1P13185 1064 aa3.04□□□□□ -1.92
UBP1YDL122W HSP104P31539 908 aaKnown RBP3.04□□□□□ -1.92
UBP1YDL122W SCT1P32784 759 aa3.04□□□□□ -1.92
UBP1YDL122W NPL4P33755 580 aa3.04□□□□□ -1.92
UBP1YDL122W STV1P37296 890 aa3.04□□□□□ -1.92
UBP1YDL122W RDH54P38086 958 aa3.04□□□□□ -1.92
UBP1YDL122W YOR131CQ12486 218 aa3.04□□□□□ -1.92
UBP1YDL122W PSE1P32337 1089 aaKnown RBP3.04□□□□□ -1.92
UBP1YDL122W DSF2P38213 736 aa3.04□□□□□ -1.92
UBP1YDL122W GIN4Q12263 1142 aa3.04□□□□□ -1.92
UBP1YDL122W HEM1P09950 548 aaPredicted RBP3.03□□□□□ -1.92
UBP1YDL122W RTF1P53064 558 aa3.03□□□□□ -1.92
UBP1YDL122W CTF4Q01454 927 aa3.03□□□□□ -1.92
UBP1YDL122W YPR109WQ06104 294 aa3.03□□□□□ -1.92
UBP1YDL122W YNR021WP53723 404 aaKnown RBP3.03□□□□□ -1.92
UBP1YDL122W CDC60P26637 1090 aaKnown RBP3.02□□□□□ -1.93
UBP1YDL122W CLB5P30283 435 aa3.02□□□□□ -1.93
UBP1YDL122W GRS1P38088 690 aaKnown RBP3.02□□□□□ -1.93
UBP1YDL122W HXT5P38695 592 aa3.02□□□□□ -1.93
UBP1YDL122W NIT1P40447 199 aa3.02□□□□□ -1.93
UBP1YDL122W NRD1P53617 575 aaKnown RBP RIP-Chip data3.02□□□□□ -1.93not detected
UBP1YDL122W YML133CQ03099 1374 aa3.02□□□□□ -1.93
UBP1YDL122W SEC3P33332 1336 aaKnown RBP3.02□□□□□ -1.93
UBP1YDL122W TY1A-DR4O74302 440 aa3.02□□□□□ -1.93
UBP1YDL122W ERG12P07277 443 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-HP0C2I4 478 aaKnown RBP3.02□□□□□ -1.93
UBP1YDL122W TY1A-AP0CX57 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-PR1P0CX58 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-ORP0CX59 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-PR2P0CX60 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-DR5P0CX65 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-ER2P0CX66 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-GR3P0CX67 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-LR1P0CX68 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-MR2P0CX69 440 aa3.02□□□□□ -1.93
UBP1YDL122W FRD1P32614 470 aaKnown RBP3.02□□□□□ -1.93
UBP1YDL122W SER1P33330 395 aaKnown RBP3.02□□□□□ -1.93
UBP1YDL122W MXR1P40029 184 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-JR2P47099 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-DR1Q03856 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-ML1Q04706 440 aaKnown RBP3.02□□□□□ -1.93
UBP1YDL122W TY1A-BRQ12217 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-NL2Q12470 440 aa3.02□□□□□ -1.93
UBP1YDL122W TY1A-GR2Q12485 440 aa3.02□□□□□ -1.93
UBP1YDL122W NUP145P49687 1317 aa3.02□□□□□ -1.93
UBP1YDL122W CAN1P04817 590 aa3.01□□□□□ -1.93
UBP1YDL122W GCD11P32481 527 aaKnown RBP3.01□□□□□ -1.93
UBP1YDL122W LCB5Q06147 687 aaKnown RBP3.01□□□□□ -1.93
UBP1YDL122W TOR2P32600 2474 aaKnown RBP3.01□□□□□ -1.93
UBP1YDL122W CAF20P12962 161 aaKnown RBP3.01□□□□□ -1.93
UBP1YDL122W SEC2P17065 759 aa3.01□□□□□ -1.93
UBP1YDL122W IDI1P15496 288 aa3□□□□□ -1.93
UBP1YDL122W SPT16P32558 1035 aaKnown RBP3□□□□□ -1.93
UBP1YDL122W YJR107WP47145 328 aa3□□□□□ -1.93
UBP1YDL122W MET7Q08645 548 aa3□□□□□ -1.93
UBP1YDL122W SSP2Q08646 371 aa3□□□□□ -1.93
UBP1YDL122W SUT2Q12286 268 aa3□□□□□ -1.93
UBP1YDL122W AUS1Q08409 1394 aa3□□□□□ -1.93
UBP1YDL122W DIT2P21595 489 aa3□□□□□ -1.93
UBP1YDL122W PAT1P25644 796 aaKnown RBP3□□□□□ -1.93
UBP1YDL122W JHD1P40034 492 aa3□□□□□ -1.93
UBP1YDL122W NOP7P53261 605 aaKnown RBP3□□□□□ -1.93
UBP1YDL122W HAT1Q12341 374 aa3□□□□□ -1.93
UBP1YDL122W FAB1P34756 2278 aa3□□□□□ -1.93
UBP1YDL122W HIP1P06775 603 aa2.99□□□□□ -1.93
UBP1YDL122W POL3P15436 1097 aa2.99□□□□□ -1.93
UBP1YDL122W UBR2Q07963 1872 aa2.99□□□□□ -1.93
UBP1YDL122W BOI1P38041 980 aaKnown RBP2.99□□□□□ -1.93
UBP1YDL122W TPS3P38426 1054 aaKnown RBP2.99□□□□□ -1.93
UBP1YDL122W UTP7P40055 554 aaKnown RBP2.99□□□□□ -1.93
UBP1YDL122W PPM2Q08282 695 aa2.99□□□□□ -1.93
UBP1YDL122W SYN8P31377 255 aa2.98□□□□□ -1.93
UBP1YDL122W NUP42P49686 430 aaKnown RBP2.98□□□□□ -1.93
UBP1YDL122W GAS5Q08193 484 aa2.98□□□□□ -1.93
UBP1YDL122W CFT2Q12102 859 aaPredicted RBP2.98□□□□□ -1.93
UBP1YDL122W CDC4P07834 779 aa2.98□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 36.6 ms