RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 P3H3Q8IVL6 736 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 TSC1Q92574 1164 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 NUDCQ9Y266 331 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 STRCP1A6NGW2 1772 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 ERBINQ96RT1 1412 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 SEC24BO95487 1268 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 GOLGA2Q08379 1002 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 R3HCC1Q9Y3T6 440 aaKnown RBP4.82□□□□□ -1.64
MCF2-210ENST00000536274 ERVK-7P63135 1459 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 DISP3Q9P2K9 1392 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 AEBP1Q8IUX7 1158 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 TMC1Q8TDI8 760 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 RPRD2Q5VT52 1461 aaKnown RBP4.81□□□□□ -1.64
MCF2-210ENST00000536274 FAM177BA6PVY3 158 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 METRNQ9UJH8 293 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 AHDC1Q5TGY3 1603 aaPredicted RBP4.81□□□□□ -1.64
MCF2-210ENST00000536274 TNRQ92752 1358 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 GCC2Q8IWJ2 1684 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 MAP3K13O43283 966 aa4.81□□□□□ -1.64
MCF2-210ENST00000536274 L1TD1Q5T7N2 865 aaKnown RBP4.81□□□□□ -1.64
MCF2-210ENST00000536274 PRKRIP1Q9H875 184 aaPredicted RBP4.81□□□□□ -1.64
MCF2-210ENST00000536274 NPHP4O75161 1426 aaPredicted RBP4.81□□□□□ -1.64
MCF2-210ENST00000536274 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.8□□□□□ -1.64
MCF2-210ENST00000536274 HSPA5P11021 654 aaKnown RBP4.8□□□□□ -1.64
MCF2-210ENST00000536274 CBX1P83916 185 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 FAM135BQ49AJ0 1406 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 FGD6Q6ZV73 1430 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 PRAG1Q86YV5 1406 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 IQGAP3Q86VI3 1631 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 LRRC7Q96NW7 1537 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 CEP152O94986 1710 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 POTEIP0CG38 1075 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 PCDH10Q9P2E7 1040 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 PIK3C2BO00750 1634 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 ADGRB3O60242 1522 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 PLCG2P16885 1265 aa4.8□□□□□ -1.64
MCF2-210ENST00000536274 CENPJQ9HC77 1338 aaPredicted RBP4.79□□□□□ -1.64
MCF2-210ENST00000536274 RRP1P56182 461 aaKnown RBP4.79□□□□□ -1.64
MCF2-210ENST00000536274 C20orf194Q5TEA3 1177 aa4.79□□□□□ -1.64
MCF2-210ENST00000536274 SPAG9O60271 1321 aaKnown RBP4.79□□□□□ -1.64
MCF2-210ENST00000536274 TET3O43151 1660 aa4.79□□□□□ -1.64
MCF2-210ENST00000536274 EFCAB6Q5THR3 1501 aa4.79□□□□□ -1.64
MCF2-210ENST00000536274 RGL2O15211 777 aa4.79□□□□□ -1.64
MCF2-210ENST00000536274 TPM2P07951 284 aa4.79□□□□□ -1.64
MCF2-210ENST00000536274 ZSCAN20P17040 1043 aaPredicted RBP4.79□□□□□ -1.64
MCF2-210ENST00000536274 L3MBTL3Q96JM7 780 aaPredicted RBP4.79□□□□□ -1.64
MCF2-210ENST00000536274 CRBNQ96SW2 442 aa4.79□□□□□ -1.64
MCF2-210ENST00000536274 MYH16Q9H6N6 1097 aa4.79□□□□□ -1.64
MCF2-210ENST00000536274 SCAF11Q99590 1463 aaKnown RBP4.79□□□□□ -1.64
MCF2-210ENST00000536274 SNPHO15079 494 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 FAM50AQ14320 339 aaKnown RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 C8orf34Q49A92 452 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 TRIM44Q96DX7 344 aaPredicted RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 CGNQ9P2M7 1197 aaKnown RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 VPS8Q8N3P4 1428 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 ADGRL2O95490 1459 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 GAS2L3Q86XJ1 694 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 BMP2KQ9NSY1 1161 aaPredicted RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 CHD2O14647 1828 aaKnown RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 CCNB3Q8WWL7 1395 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 UNC13BO14795 1591 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 G3V3G9 751 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 XPCQ01831 940 aaPredicted RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 DMTNQ08495 405 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 FTSJ3Q8IY81 847 aaKnown RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 SMAP1Q8IYB5 467 aaPredicted RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 CDCA7LQ96GN5 454 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 TMEM106CQ9BVX2 250 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 ESF1Q9H501 851 aaKnown RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 RNF123Q5XPI4 1314 aa4.78□□□□□ -1.64
MCF2-210ENST00000536274 SMG6Q86US8 1419 aaKnown RBP4.78□□□□□ -1.64
MCF2-210ENST00000536274 UQCRHLA0A096LP55 91 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 FSD2A1L4K1 749 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 UQCRHP07919 91 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 KCNG1Q9UIX4 513 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 DCCP43146 1447 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 PIK3R4Q99570 1358 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 TOM1O60784 492 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 MS4A1P11836 297 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 HSPA2P54652 639 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 MKRN3Q13064 507 aaKnown RBP4.77□□□□□ -1.65
MCF2-210ENST00000536274 PDAP1Q13442 181 aaKnown RBP4.77□□□□□ -1.65
MCF2-210ENST00000536274 GRPEL1Q9HAV7 217 aa4.77□□□□□ -1.65
MCF2-210ENST00000536274 ECM2O94769 699 aaPredicted RBP4.76□□□□□ -1.65
MCF2-210ENST00000536274 MLECQ14165 292 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 NGEFQ8N5V2 710 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 NHSL1Q5SYE7 1610 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 TTLL13PA6NNM8 815 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 MPNDQ8N594 471 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 TRERF1Q96PN7 1200 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 COL16A1Q07092 1604 aaPredicted RBP4.76□□□□□ -1.65
MCF2-210ENST00000536274 TONSLQ96HA7 1378 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 RCAN3Q9UKA8 241 aa4.76□□□□□ -1.65
MCF2-210ENST00000536274 CIZ1Q9ULV3 898 aaPredicted RBP4.76□□□□□ -1.65
MCF2-210ENST00000536274 SPHKAPQ2M3C7 1700 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 TRAK2O60296 914 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 ATN1P54259 1190 aaPredicted RBP4.75□□□□□ -1.65
MCF2-210ENST00000536274 DNTTIP2Q5QJE6 756 aaKnown RBP4.75□□□□□ -1.65
MCF2-210ENST00000536274 ILDR2Q71H61 639 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 THEMISQ8N1K5 641 aaPredicted RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms