RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 THUMPD2Q9BTF0 503 aaKnown RBP17.01■□□□□ 0.31
CTDP1-202ENST00000299543 PHF23Q9BUL5 403 aaPredicted RBP17.01■□□□□ 0.31
CTDP1-202ENST00000299543 CYB5RLQ6IPT4 315 aa17■□□□□ 0.31
CTDP1-202ENST00000299543 NINLQ9Y2I6 1382 aa17■□□□□ 0.31
CTDP1-202ENST00000299543 ADGRB3O60242 1522 aa17■□□□□ 0.31
CTDP1-202ENST00000299543 CCDC27Q2M243 656 aa17■□□□□ 0.31
CTDP1-202ENST00000299543 NRXN1Q9ULB1 1477 aa17■□□□□ 0.31
CTDP1-202ENST00000299543 ARID3AQ99856 593 aa17■□□□□ 0.31
CTDP1-202ENST00000299543 TRIM35Q9UPQ4 493 aa17■□□□□ 0.31
CTDP1-202ENST00000299543 TMEM57Q8N5G2 664 aa16.98■□□□□ 0.31
CTDP1-202ENST00000299543 SLC52A1Q9NWF4 448 aa16.98■□□□□ 0.31
CTDP1-202ENST00000299543 PRKAR2BP31323 418 aa16.98■□□□□ 0.31
CTDP1-202ENST00000299543 ATF7IPQ6VMQ6 1270 aa16.98■□□□□ 0.31
CTDP1-202ENST00000299543 QRICH2Q9H0J4 1663 aa16.97■□□□□ 0.31
CTDP1-202ENST00000299543 LNPKQ9C0E8 428 aa16.96■□□□□ 0.31
CTDP1-202ENST00000299543 ADGRB1O14514 1584 aa16.96■□□□□ 0.31
CTDP1-202ENST00000299543 PLEKHF1Q96S99 279 aa16.95■□□□□ 0.3
CTDP1-202ENST00000299543 DDX19BQ9UMR2 479 aa16.95■□□□□ 0.3
CTDP1-202ENST00000299543 C1orf115Q9H7X2 142 aa16.95■□□□□ 0.3
CTDP1-202ENST00000299543 RBM10P98175 930 aaKnown RBP16.94■□□□□ 0.3
CTDP1-202ENST00000299543 ABCC3O15438 1527 aa16.94■□□□□ 0.3
CTDP1-202ENST00000299543 TBC1D2Q9BYX2 928 aa16.94■□□□□ 0.3
CTDP1-202ENST00000299543 MLH3Q9UHC1 1453 aa16.94■□□□□ 0.3
CTDP1-202ENST00000299543 LMTK2Q8IWU2 1503 aa16.93■□□□□ 0.3
CTDP1-202ENST00000299543 TULP4Q9NRJ4 1543 aa16.93■□□□□ 0.3
CTDP1-202ENST00000299543 NUTM2FA1L443 756 aa16.93■□□□□ 0.3
CTDP1-202ENST00000299543 TBC1D32Q96NH3 1257 aa16.93■□□□□ 0.3
CTDP1-202ENST00000299543 YEATS2Q9ULM3 1422 aa16.93■□□□□ 0.3
CTDP1-202ENST00000299543 IPO8O15397 1037 aaKnown RBP16.92■□□□□ 0.3
CTDP1-202ENST00000299543 AAMPQ13685 434 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 ZRANB1Q9UGI0 708 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 SETBP1Q9Y6X0 1596 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 C22orf23Q9BZE7 217 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 NSD2O96028 1365 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 FRMPD1Q5SYB0 1578 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 SOX12O15370 315 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 EMILIN1Q9Y6C2 1016 aa16.92■□□□□ 0.3
CTDP1-202ENST00000299543 RRP9O43818 475 aaKnown RBP16.91■□□□□ 0.3
CTDP1-202ENST00000299543 PHACTR3Q96KR7 559 aa16.91■□□□□ 0.3
CTDP1-202ENST00000299543 GLI2P10070 1586 aa16.91■□□□□ 0.3
CTDP1-202ENST00000299543 ABCC11Q96J66 1382 aa16.91■□□□□ 0.3
CTDP1-202ENST00000299543 IQSEC2Q5JU85 1478 aa16.91■□□□□ 0.3
CTDP1-202ENST00000299543 ATAD2Q6PL18 1390 aa16.91■□□□□ 0.3
CTDP1-202ENST00000299543 PUS7Q96PZ0 661 aaKnown RBP16.91■□□□□ 0.3
CTDP1-202ENST00000299543 NCKAP5LQ9HCH0 1330 aa16.9■□□□□ 0.3
CTDP1-202ENST00000299543 XRCC6P12956 609 aaKnown RBP eCLIP16.9■□□□□ 0.3
CTDP1-202ENST00000299543 FAM69CQ0P6D2 419 aa16.9■□□□□ 0.3
CTDP1-202ENST00000299543 PLPPR3Q6T4P5 718 aa16.9■□□□□ 0.3
CTDP1-202ENST00000299543 SHPRHQ149N8 1683 aa16.9■□□□□ 0.3
CTDP1-202ENST00000299543 NEURL4Q96JN8 1562 aa16.9■□□□□ 0.3
CTDP1-202ENST00000299543 IFT172Q9UG01 1749 aa16.9■□□□□ 0.3
CTDP1-202ENST00000299543 ANKRD45Q5TZF3 282 aa16.89■□□□□ 0.3
CTDP1-202ENST00000299543 PPLO60437 1756 aa16.89■□□□□ 0.29
CTDP1-202ENST00000299543 RRS1Q15050 365 aaKnown RBP16.89■□□□□ 0.29
CTDP1-202ENST00000299543 TXNDC2Q86VQ3 553 aa16.89■□□□□ 0.29
CTDP1-202ENST00000299543 NME9Q86XW9 330 aa16.89■□□□□ 0.29
CTDP1-202ENST00000299543 POLKQ9UBT6 870 aa16.89■□□□□ 0.29
CTDP1-202ENST00000299543 HECW2Q9P2P5 1572 aa16.88■□□□□ 0.29
CTDP1-202ENST00000299543 TSPYL6Q8N831 410 aa16.88■□□□□ 0.29
CTDP1-202ENST00000299543 CT47B1P0C2W7 299 aaPredicted RBP16.88■□□□□ 0.29
CTDP1-202ENST00000299543 MYO3AQ8NEV4 1616 aa16.87■□□□□ 0.29
CTDP1-202ENST00000299543 DCTN1Q14203 1278 aa16.87■□□□□ 0.29
CTDP1-202ENST00000299543 YTHDC2Q9H6S0 1430 aaKnown RBP16.87■□□□□ 0.29
CTDP1-202ENST00000299543 FCHSD2O94868 740 aa16.87■□□□□ 0.29
CTDP1-202ENST00000299543 FOXD4L1Q9NU39 408 aa16.86■□□□□ 0.29
CTDP1-202ENST00000299543 KIF16BQ96L93 1317 aa16.86■□□□□ 0.29
CTDP1-202ENST00000299543 ZBTB40Q9NUA8 1239 aa16.86■□□□□ 0.29
CTDP1-202ENST00000299543 ERBB4Q15303 1308 aa16.85■□□□□ 0.29
CTDP1-202ENST00000299543 FAM83GA6ND36 823 aa16.85■□□□□ 0.29
CTDP1-202ENST00000299543 ESF1Q9H501 851 aaKnown RBP16.85■□□□□ 0.29
CTDP1-202ENST00000299543 NEXMIFQ5QGS0 1516 aa16.84■□□□□ 0.29
CTDP1-202ENST00000299543 APBB1O00213 710 aa16.84■□□□□ 0.29
CTDP1-202ENST00000299543 HDAC1Q13547 482 aaPredicted RBP16.84■□□□□ 0.29
CTDP1-202ENST00000299543 HSCBQ8IWL3 235 aa16.83■□□□□ 0.29
CTDP1-202ENST00000299543 CAMSAP1Q5T5Y3 1602 aa16.83■□□□□ 0.28
CTDP1-202ENST00000299543 NFE2L2Q16236 605 aa16.82■□□□□ 0.28
CTDP1-202ENST00000299543 SIGLEC1Q9BZZ2 1709 aa16.82■□□□□ 0.28
CTDP1-202ENST00000299543 CLCN1P35523 988 aa16.81■□□□□ 0.28
CTDP1-202ENST00000299543 CHD1LQ86WJ1 897 aa16.81■□□□□ 0.28
CTDP1-202ENST00000299543 SMC5Q8IY18 1101 aa16.81■□□□□ 0.28
CTDP1-202ENST00000299543 COG3Q96JB2 828 aa16.81■□□□□ 0.28
CTDP1-202ENST00000299543 ANTXR1Q9H6X2 564 aa16.8■□□□□ 0.28
CTDP1-202ENST00000299543 IL16Q14005 1332 aa16.8■□□□□ 0.28
CTDP1-202ENST00000299543 VAMP4O75379 141 aa16.8■□□□□ 0.28
CTDP1-202ENST00000299543 MBIPQ9NS73 344 aa16.8■□□□□ 0.28
CTDP1-202ENST00000299543 TWISTNBQ3B726 338 aaPredicted RBP16.8■□□□□ 0.28
CTDP1-202ENST00000299543 ARHGEF28Q8N1W1 1705 aaKnown RBP16.79■□□□□ 0.28
CTDP1-202ENST00000299543 C8orf58Q8NAV2 365 aa16.78■□□□□ 0.28
CTDP1-202ENST00000299543 HSP90AB1P08238 724 aaKnown RBP16.78■□□□□ 0.28
CTDP1-202ENST00000299543 GNAI1P63096 354 aa16.78■□□□□ 0.28
CTDP1-202ENST00000299543 NUDT16Q96DE0 195 aaKnown RBP16.78■□□□□ 0.28
CTDP1-202ENST00000299543 NUCB1Q02818 461 aa16.78■□□□□ 0.28
CTDP1-202ENST00000299543 ALDH1L2Q3SY69 923 aa16.78■□□□□ 0.28
CTDP1-202ENST00000299543 L1TD1Q5T7N2 865 aaKnown RBP16.77■□□□□ 0.28
CTDP1-202ENST00000299543 PTPRMP28827 1452 aa16.77■□□□□ 0.28
CTDP1-202ENST00000299543 ZC3H13Q5T200 1668 aaKnown RBP16.77■□□□□ 0.28
CTDP1-202ENST00000299543 KRT24Q2M2I5 525 aa16.77■□□□□ 0.28
CTDP1-202ENST00000299543 NLRP1Q9C000 1473 aa16.77■□□□□ 0.27
CTDP1-202ENST00000299543 PIK3C2BO00750 1634 aa16.77■□□□□ 0.27
CTDP1-202ENST00000299543 GOLGA6L3A6NEY3 463 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms