RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DCTN1Q14203 1278 aa13.65□□□□□ -0.22
USP28-201ENST00000003302 RBM42Q9BTD8 480 aaKnown RBP13.65□□□□□ -0.22
USP28-201ENST00000003302 FOXD4L1Q9NU39 408 aa13.65□□□□□ -0.22
USP28-201ENST00000003302 STAC3Q96MF2 364 aa13.64□□□□□ -0.23
USP28-201ENST00000003302 KRT24Q2M2I5 525 aa13.64□□□□□ -0.23
USP28-201ENST00000003302 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
USP28-201ENST00000003302 POGZQ7Z3K3 1410 aa13.64□□□□□ -0.23
USP28-201ENST00000003302 COL3A1P02461 1466 aaPredicted RBP13.64□□□□□ -0.23
USP28-201ENST00000003302 EVC2Q86UK5 1308 aa13.63□□□□□ -0.23
USP28-201ENST00000003302 ZKSCAN2Q63HK3 967 aa13.63□□□□□ -0.23
USP28-201ENST00000003302 MAPK8IP3Q9UPT6 1336 aa13.63□□□□□ -0.23
USP28-201ENST00000003302 SETBP1Q9Y6X0 1596 aa13.63□□□□□ -0.23
USP28-201ENST00000003302 RRAGDQ9NQL2 400 aaPredicted RBP13.62□□□□□ -0.23
USP28-201ENST00000003302 ATF7IPQ6VMQ6 1270 aa13.61□□□□□ -0.23
USP28-201ENST00000003302 ADGRB2O60241 1585 aa13.61□□□□□ -0.23
USP28-201ENST00000003302 PRKAR2BP31323 418 aa13.61□□□□□ -0.23
USP28-201ENST00000003302 SIRT2Q8IXJ6 389 aa13.61□□□□□ -0.23
USP28-201ENST00000003302 LMTK2Q8IWU2 1503 aa13.61□□□□□ -0.23
USP28-201ENST00000003302 CCDC27Q2M243 656 aa13.61□□□□□ -0.23
USP28-201ENST00000003302 ABCC11Q96J66 1382 aa13.61□□□□□ -0.23
USP28-201ENST00000003302 HECW2Q9P2P5 1572 aa13.6□□□□□ -0.23
USP28-201ENST00000003302 ZBTB40Q9NUA8 1239 aa13.6□□□□□ -0.23
USP28-201ENST00000003302 PIK3C2BO00750 1634 aa13.6□□□□□ -0.23
USP28-201ENST00000003302 PMFBP1Q8TBY8 1022 aa13.6□□□□□ -0.23
USP28-201ENST00000003302 CFAP53Q96M91 514 aa13.6□□□□□ -0.23
USP28-201ENST00000003302 CDK19Q9BWU1 502 aa13.6□□□□□ -0.23
USP28-201ENST00000003302 PTPRMP28827 1452 aa13.6□□□□□ -0.23
USP28-201ENST00000003302 RRS1Q15050 365 aaKnown RBP13.6□□□□□ -0.23
USP28-201ENST00000003302 AK9Q5TCS8 1911 aa13.59□□□□□ -0.23
USP28-201ENST00000003302 NUTM2FA1L443 756 aa13.59□□□□□ -0.23
USP28-201ENST00000003302 C22orf23Q9BZE7 217 aa13.59□□□□□ -0.23
USP28-201ENST00000003302 NEURL4Q96JN8 1562 aa13.59□□□□□ -0.23
USP28-201ENST00000003302 POLKQ9UBT6 870 aa13.59□□□□□ -0.23
USP28-201ENST00000003302 MYH16Q9H6N6 1097 aa13.58□□□□□ -0.23
USP28-201ENST00000003302 NME9Q86XW9 330 aa13.58□□□□□ -0.24
USP28-201ENST00000003302 RWDD1Q9H446 243 aaPredicted RBP13.58□□□□□ -0.24
USP28-201ENST00000003302 CHAMP1Q96JM3 812 aa13.58□□□□□ -0.24
USP28-201ENST00000003302 ZNF692Q9BU19 519 aaPredicted RBP13.58□□□□□ -0.24
USP28-201ENST00000003302 MLECQ14165 292 aa13.58□□□□□ -0.24
USP28-201ENST00000003302 KIF2CQ99661 725 aa13.57□□□□□ -0.24
USP28-201ENST00000003302 VGFO15240 615 aaPredicted RBP13.57□□□□□ -0.24
USP28-201ENST00000003302 LRRC7Q96NW7 1537 aa13.57□□□□□ -0.24
USP28-201ENST00000003302 C16orf71Q8IYS4 520 aaPredicted RBP13.56□□□□□ -0.24
USP28-201ENST00000003302 XRCC6P12956 609 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP28-201ENST00000003302 RSPH6AQ9H0K4 717 aa13.56□□□□□ -0.24
USP28-201ENST00000003302 C8orf58Q8NAV2 365 aa13.56□□□□□ -0.24
USP28-201ENST00000003302 OTUD7AQ8TE49 926 aaPredicted RBP13.56□□□□□ -0.24
USP28-201ENST00000003302 AEBP1Q8IUX7 1158 aa13.55□□□□□ -0.24
USP28-201ENST00000003302 SMC5Q8IY18 1101 aa13.55□□□□□ -0.24
USP28-201ENST00000003302 DIAPH1O60610 1272 aaKnown RBP13.55□□□□□ -0.24
USP28-201ENST00000003302 SOX12O15370 315 aa13.55□□□□□ -0.24
USP28-201ENST00000003302 MLH3Q9UHC1 1453 aa13.55□□□□□ -0.24
USP28-201ENST00000003302 PPIP5K1Q6PFW1 1433 aa13.55□□□□□ -0.24
USP28-201ENST00000003302 USP32Q8NFA0 1604 aa13.54□□□□□ -0.24
USP28-201ENST00000003302 DIP2CQ9Y2E4 1556 aa13.54□□□□□ -0.24
USP28-201ENST00000003302 YTHDC2Q9H6S0 1430 aaKnown RBP13.53□□□□□ -0.24
USP28-201ENST00000003302 EIF5BO60841 1220 aaKnown RBP13.53□□□□□ -0.24
USP28-201ENST00000003302 APBB1O00213 710 aa13.53□□□□□ -0.24
USP28-201ENST00000003302 VAMP4O75379 141 aa13.53□□□□□ -0.24
USP28-201ENST00000003302 NPM1P06748 294 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP28-201ENST00000003302 MAP2P11137 1827 aaKnown RBP13.53□□□□□ -0.24
USP28-201ENST00000003302 MED14O60244 1454 aa13.52□□□□□ -0.24
USP28-201ENST00000003302 ZBTB7BO15156 539 aaPredicted RBP13.52□□□□□ -0.24
USP28-201ENST00000003302 MCM4P33991 863 aa13.52□□□□□ -0.24
USP28-201ENST00000003302 ANKRD45Q5TZF3 282 aa13.52□□□□□ -0.24
USP28-201ENST00000003302 MBIPQ9NS73 344 aa13.52□□□□□ -0.24
USP28-201ENST00000003302 NINLQ9Y2I6 1382 aa13.52□□□□□ -0.24
USP28-201ENST00000003302 PRKCSHP14314 528 aaPredicted RBP13.52□□□□□ -0.24
USP28-201ENST00000003302 HDAC1Q13547 482 aaPredicted RBP13.52□□□□□ -0.24
USP28-201ENST00000003302 GAS2L3Q86XJ1 694 aa13.52□□□□□ -0.24
USP28-201ENST00000003302 MIS18AQ9NYP9 233 aa13.52□□□□□ -0.25
USP28-201ENST00000003302 TXNDC2Q86VQ3 553 aa13.51□□□□□ -0.25
USP28-201ENST00000003302 NGEFQ8N5V2 710 aa13.51□□□□□ -0.25
USP28-201ENST00000003302 NUCB1Q02818 461 aa13.51□□□□□ -0.25
USP28-201ENST00000003302 DDX19BQ9UMR2 479 aa13.51□□□□□ -0.25
USP28-201ENST00000003302 BECN1Q14457 450 aa13.5□□□□□ -0.25
USP28-201ENST00000003302 TMEM131LA2VDJ0 1609 aa13.5□□□□□ -0.25
USP28-201ENST00000003302 PNPLA6Q8IY17 1366 aa13.5□□□□□ -0.25
USP28-201ENST00000003302 PKP1Q13835 747 aa13.5□□□□□ -0.25
USP28-201ENST00000003302 CHD1LQ86WJ1 897 aa13.5□□□□□ -0.25
USP28-201ENST00000003302 GSPT1P15170 499 aaKnown RBP13.49□□□□□ -0.25
USP28-201ENST00000003302 RPGRIP1LQ68CZ1 1315 aa13.49□□□□□ -0.25
USP28-201ENST00000003302 ARHGEF40Q8TER5 1519 aa13.49□□□□□ -0.25
USP28-201ENST00000003302 KNDC1Q76NI1 1749 aa13.49□□□□□ -0.25
USP28-201ENST00000003302 CYB5RLQ6IPT4 315 aa13.49□□□□□ -0.25
USP28-201ENST00000003302 ERBB4Q15303 1308 aa13.48□□□□□ -0.25
USP28-201ENST00000003302 SMARCA5O60264 1052 aaPredicted RBP13.48□□□□□ -0.25
USP28-201ENST00000003302 MRPL50Q8N5N7 158 aaKnown RBP13.48□□□□□ -0.25
USP28-201ENST00000003302 UPF2Q9HAU5 1272 aaKnown RBP13.48□□□□□ -0.25
USP28-201ENST00000003302 TBC1D9Q6ZT07 1266 aa13.48□□□□□ -0.25
USP28-201ENST00000003302 TSHZ3Q63HK5 1081 aa13.48□□□□□ -0.25
USP28-201ENST00000003302 DDIT3P35638 169 aa13.48□□□□□ -0.25
USP28-201ENST00000003302 OSCARQ8IYS5 282 aa13.48□□□□□ -0.25
USP28-201ENST00000003302 TRAK2O60296 914 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 SLC24A1O60721 1099 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 CPS1P31327 1500 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 MCM10Q7L590 875 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 FAM135BQ49AJ0 1406 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 METP08581 1390 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 DTNBO60941 627 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms