RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C RPS26BP39939 119 aaKnown RBP3.27□□□□□ -1.89
UBP11YKR098C CLA4P48562 842 aa3.27□□□□□ -1.89
UBP11YKR098C RMD1Q03441 430 aa3.27□□□□□ -1.89
UBP11YKR098C BSC2Q05611 235 aa3.27□□□□□ -1.89
UBP11YKR098C TOS4Q06266 489 aa3.27□□□□□ -1.89
UBP11YKR098C MSN1P22148 382 aa3.27□□□□□ -1.89
UBP11YKR098C AMS1P22855 1083 aa3.27□□□□□ -1.89
UBP11YKR098C DYS1P38791 387 aa3.27□□□□□ -1.89
UBP11YKR098C QDR2P40474 542 aa3.27□□□□□ -1.89
UBP11YKR098C ALA1P40825 983 aaKnown RBP3.27□□□□□ -1.89
UBP11YKR098C RGD2P43556 714 aa3.27□□□□□ -1.89
UBP11YKR098C YGR122WP53272 402 aa3.27□□□□□ -1.89
UBP11YKR098C VPS16Q03308 798 aa3.27□□□□□ -1.89
UBP11YKR098C NOC3Q07896 663 aaPredicted RBP3.27□□□□□ -1.89
UBP11YKR098C PIN2Q12057 282 aa3.27□□□□□ -1.89
UBP11YKR098C RPS31P05759 152 aaKnown RBP3.26□□□□□ -1.89
UBP11YKR098C CYC8P14922 966 aa3.26□□□□□ -1.89
UBP11YKR098C RAD55P38953 406 aa3.26□□□□□ -1.89
UBP11YKR098C NTA1P40354 457 aa3.26□□□□□ -1.89
UBP11YKR098C MSN5P52918 1224 aa3.26□□□□□ -1.89
UBP11YKR098C ALD3P54114 506 aa3.26□□□□□ -1.89
UBP11YKR098C SHM1P37292 490 aaPredicted RBP3.25□□□□□ -1.89
UBP11YKR098C CIC1P38779 376 aaKnown RBP3.25□□□□□ -1.89
UBP11YKR098C VAC8P39968 578 aa3.25□□□□□ -1.89
UBP11YKR098C JJJ2P46997 583 aa3.25□□□□□ -1.89
UBP11YKR098C ALD6P54115 500 aaKnown RBP3.25□□□□□ -1.89
UBP11YKR098C OXR1Q08952 273 aa3.25□□□□□ -1.89
UBP11YKR098C HXK1P04806 485 aaKnown RBP3.25□□□□□ -1.89
UBP11YKR098C UGA3P26370 528 aa3.25□□□□□ -1.89
UBP11YKR098C PEP7P32609 515 aa3.25□□□□□ -1.89
UBP11YKR098C FIR1P40020 876 aa3.25□□□□□ -1.89
UBP11YKR098C MAD1P40957 749 aa3.25□□□□□ -1.89
UBP11YKR098C MSB3P48566 633 aaPredicted RBP3.25□□□□□ -1.89
UBP11YKR098C ESF1Q06344 628 aaKnown RBP3.25□□□□□ -1.89
UBP11YKR098C TIF6Q12522 245 aaKnown RBP3.25□□□□□ -1.89
UBP11YKR098C RAD2P07276 1031 aa3.24□□□□□ -1.89
UBP11YKR098C KAP122P32767 1081 aa3.24□□□□□ -1.89
UBP11YKR098C IRS4P36115 615 aaKnown RBP3.24□□□□□ -1.89
UBP11YKR098C FAA3P39002 694 aa3.24□□□□□ -1.89
UBP11YKR098C PSY2P40164 858 aa3.24□□□□□ -1.89
UBP11YKR098C AAD14P42884 376 aa3.24□□□□□ -1.89
UBP11YKR098C FPR4Q06205 392 aaPredicted RBP3.24□□□□□ -1.89
UBP11YKR098C INP54Q08227 384 aaKnown RBP3.24□□□□□ -1.89
UBP11YKR098C ARG82P07250 355 aa3.24□□□□□ -1.89
UBP11YKR098C RPC31P17890 251 aa3.24□□□□□ -1.89
UBP11YKR098C CLN2P20438 545 aa3.24□□□□□ -1.89
UBP11YKR098C NAB2P32505 525 aaKnown RBP RIP-Chip data3.24□□□□□ -1.89not detected
UBP11YKR098C ISW1P38144 1129 aa3.24□□□□□ -1.89
UBP11YKR098C AIR1P40507 360 aaKnown RBP3.24□□□□□ -1.89
UBP11YKR098C TY1A-DR3Q12441 440 aa3.24□□□□□ -1.89
UBP11YKR098C YOL098CQ12496 1037 aa3.24□□□□□ -1.89
UBP11YKR098C AFT1P22149 690 aa3.23□□□□□ -1.89
UBP11YKR098C IRE1P32361 1115 aa3.23□□□□□ -1.89
UBP11YKR098C SLA1P32790 1244 aa3.23□□□□□ -1.89
UBP11YKR098C PET112P33893 541 aa3.23□□□□□ -1.89
UBP11YKR098C MNR2P35724 969 aa3.23□□□□□ -1.89
UBP11YKR098C GIP1P38229 639 aa3.23□□□□□ -1.89
UBP11YKR098C BSD2P38356 321 aa3.23□□□□□ -1.89
UBP11YKR098C RAS1P01119 309 aa3.22□□□□□ -1.89
UBP11YKR098C CDC4P07834 779 aa3.22□□□□□ -1.89
UBP11YKR098C YTA6P40328 754 aa3.22□□□□□ -1.89
UBP11YKR098C MTO1P53070 669 aa3.22□□□□□ -1.89
UBP11YKR098C CTR9P89105 1077 aa3.22□□□□□ -1.89
UBP11YKR098C DAL4Q04895 635 aa3.22□□□□□ -1.89
UBP11YKR098C YCS4Q06156 1176 aa3.22□□□□□ -1.89
UBP11YKR098C YOR296WQ08748 1289 aa3.22□□□□□ -1.89
UBP11YKR098C SSF2Q12153 453 aaPredicted RBP3.22□□□□□ -1.89
UBP11YKR098C FLP1P03870 423 aa3.22□□□□□ -1.89
UBP11YKR098C DAL1P32375 460 aa3.22□□□□□ -1.89
UBP11YKR098C ASH1P34233 588 aa3.22□□□□□ -1.89
UBP11YKR098C AHP1P38013 176 aaKnown RBP3.22□□□□□ -1.89
UBP11YKR098C YHL008CP38750 627 aa3.22□□□□□ -1.89
UBP11YKR098C IOC4Q04213 475 aa3.22□□□□□ -1.89
UBP11YKR098C PSH1Q12161 406 aa3.22□□□□□ -1.89
UBP11YKR098C COBP00163 385 aa3.21□□□□□ -1.9
UBP11YKR098C PRE9P23638 258 aaKnown RBP3.21□□□□□ -1.9
UBP11YKR098C PDC6P26263 563 aaKnown RBP3.21□□□□□ -1.9
UBP11YKR098C DLD1P32891 587 aa3.21□□□□□ -1.9
UBP11YKR098C PRP40P33203 583 aaKnown RBP3.21□□□□□ -1.9
UBP11YKR098C IOC3P43596 787 aa3.21□□□□□ -1.9
UBP11YKR098C VTC4P47075 721 aa3.21□□□□□ -1.9
UBP11YKR098C HST3P53687 447 aa3.21□□□□□ -1.9
UBP11YKR098C EMG1Q06287 252 aaKnown RBP3.21□□□□□ -1.9
UBP11YKR098C LEU1P07264 779 aaKnown RBP3.21□□□□□ -1.9
UBP11YKR098C UGA4P32837 571 aa3.21□□□□□ -1.9
UBP11YKR098C YBR287WP38355 427 aa3.21□□□□□ -1.9
UBP11YKR098C AIM46P38885 310 aa3.21□□□□□ -1.9
UBP11YKR098C MRPS18P42847 217 aa3.21□□□□□ -1.9
UBP11YKR098C PTK2P47116 818 aaKnown RBP3.21□□□□□ -1.9
UBP11YKR098C DOS2P54858 310 aa3.21□□□□□ -1.9
UBP11YKR098C MCD1Q12158 566 aa3.21□□□□□ -1.9
UBP11YKR098C SPC42P36094 363 aa3.2□□□□□ -1.9
UBP11YKR098C BRN1P38170 754 aa3.2□□□□□ -1.9
UBP11YKR098C SKP1P52286 194 aa3.2□□□□□ -1.9
UBP11YKR098C CUS1Q02554 436 aaPredicted RBP3.2□□□□□ -1.9
UBP11YKR098C YPL109CQ02981 657 aa3.2□□□□□ -1.9
UBP11YKR098C WRS1Q12109 432 aaKnown RBP3.2□□□□□ -1.9
UBP11YKR098C MCM5P29496 775 aaKnown RBP3.19□□□□□ -1.9
UBP11YKR098C SRP40P32583 406 aaPredicted RBP3.19□□□□□ -1.9
UBP11YKR098C DUR3P33413 735 aa3.19□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 52 ms