RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C YMR124WP39523 943 aaKnown RBP6.34□□□□□ -1.39
VPS1YKR001C TEA1P47988 759 aa6.34□□□□□ -1.39
VPS1YKR001C LPD1P09624 499 aaKnown RBP6.34□□□□□ -1.4
VPS1YKR001C RTG3P38165 486 aa6.34□□□□□ -1.4
VPS1YKR001C BUD27P43573 796 aaKnown RBP RIP-Chip data6.34□□□□□ -1.4not detected
VPS1YKR001C CTF4Q01454 927 aa6.34□□□□□ -1.4
VPS1YKR001C NFI1Q12216 726 aa6.34□□□□□ -1.4
VPS1YKR001C RPL5P26321 297 aaKnown RBP6.33□□□□□ -1.4
VPS1YKR001C ICL1P28240 557 aaPredicted RBP6.33□□□□□ -1.4
VPS1YKR001C CTR9P89105 1077 aa6.33□□□□□ -1.4
VPS1YKR001C RMT2Q03305 412 aa6.33□□□□□ -1.4
VPS1YKR001C YPR172WQ06608 200 aa6.32□□□□□ -1.4
VPS1YKR001C YVC1Q12324 675 aa6.32□□□□□ -1.4
VPS1YKR001C TOM1Q03280 3268 aa6.32□□□□□ -1.4
VPS1YKR001C HSP104P31539 908 aaKnown RBP6.32□□□□□ -1.4
VPS1YKR001C VHR2P40041 505 aa6.32□□□□□ -1.4
VPS1YKR001C RAD26P40352 1085 aa6.32□□□□□ -1.4
VPS1YKR001C DSD1P53095 428 aa6.32□□□□□ -1.4
VPS1YKR001C RAT1Q02792 1006 aaKnown RBP6.32□□□□□ -1.4
VPS1YKR001C IRC3Q06683 689 aa6.32□□□□□ -1.4
VPS1YKR001C PSR1Q07800 427 aa6.32□□□□□ -1.4
VPS1YKR001C CLN1P20437 546 aa6.31□□□□□ -1.4
VPS1YKR001C SMC3P47037 1230 aa6.31□□□□□ -1.4
VPS1YKR001C YKU70P32807 602 aa6.31□□□□□ -1.4
VPS1YKR001C TPS3P38426 1054 aaKnown RBP6.31□□□□□ -1.4
VPS1YKR001C SLX8P40072 274 aa6.31□□□□□ -1.4
VPS1YKR001C BUB1P41695 1021 aaKnown RBP RIP-Chip data6.31□□□□□ -1.4not detected
VPS1YKR001C SDH2P21801 266 aa6.3□□□□□ -1.4
VPS1YKR001C ERV41Q04651 352 aa6.3□□□□□ -1.4
VPS1YKR001C UBX5Q06682 500 aa6.3□□□□□ -1.4
VPS1YKR001C BDF2Q07442 638 aa6.3□□□□□ -1.4
VPS1YKR001C GRX6Q12438 231 aa6.3□□□□□ -1.4
VPS1YKR001C SER1P33330 395 aaKnown RBP6.29□□□□□ -1.4
VPS1YKR001C POL5P39985 1022 aaKnown RBP6.29□□□□□ -1.4
VPS1YKR001C PHM7Q12252 991 aa6.29□□□□□ -1.4
VPS1YKR001C HSP42Q12329 375 aa6.29□□□□□ -1.4
VPS1YKR001C HKR1P41809 1802 aa6.29□□□□□ -1.4
VPS1YKR001C HOS2P53096 452 aaPredicted RBP6.29□□□□□ -1.4
VPS1YKR001C BNI5P53890 448 aaKnown RBP6.29□□□□□ -1.4
VPS1YKR001C DIB1Q06819 143 aaPredicted RBP6.29□□□□□ -1.4
VPS1YKR001C YOR389WQ08912 624 aa6.29□□□□□ -1.4
VPS1YKR001C SIT4P20604 311 aa6.28□□□□□ -1.4
VPS1YKR001C OPI1P21957 404 aa6.28□□□□□ -1.4
VPS1YKR001C PMC1P38929 1173 aaPredicted RBP6.28□□□□□ -1.4
VPS1YKR001C YIL089WP40500 205 aa6.28□□□□□ -1.4
VPS1YKR001C VTC3Q02725 835 aa6.28□□□□□ -1.4
VPS1YKR001C KAR2P16474 682 aaKnown RBP6.28□□□□□ -1.4
VPS1YKR001C SPB4P25808 606 aaPredicted RBP6.28□□□□□ -1.4
VPS1YKR001C ERP2P39704 215 aa6.28□□□□□ -1.4
VPS1YKR001C RSC2Q06488 889 aa6.28□□□□□ -1.4
VPS1YKR001C NOP58Q12499 511 aaKnown RBP6.28□□□□□ -1.4
VPS1YKR001C BLI1P35727 113 aa6.27□□□□□ -1.41
VPS1YKR001C BNI4P53858 892 aa6.27□□□□□ -1.41
VPS1YKR001C SRP54P20424 541 aaKnown RBP6.26□□□□□ -1.41
VPS1YKR001C FAF1P40546 346 aaPredicted RBP6.26□□□□□ -1.41
VPS1YKR001C DSN1P40568 576 aa6.26□□□□□ -1.41
VPS1YKR001C JIP5Q06214 492 aaPredicted RBP6.26□□□□□ -1.41
VPS1YKR001C AOS1Q06624 347 aa6.26□□□□□ -1.41
VPS1YKR001C PUS1Q12211 544 aaKnown RBP6.26□□□□□ -1.41
VPS1YKR001C HAA1Q12753 694 aaKnown RBP6.26□□□□□ -1.41
VPS1YKR001C CAF20P12962 161 aaKnown RBP6.26□□□□□ -1.41
VPS1YKR001C MSM1P22438 575 aa6.26□□□□□ -1.41
VPS1YKR001C FET4P40988 552 aa6.26□□□□□ -1.41
VPS1YKR001C YGL081WP53156 320 aa6.26□□□□□ -1.41
VPS1YKR001C RRB1Q04225 511 aaKnown RBP6.26□□□□□ -1.41
VPS1YKR001C SGT2Q12118 346 aaKnown RBP6.26□□□□□ -1.41
VPS1YKR001C GLE1Q12315 538 aa6.26□□□□□ -1.41
VPS1YKR001C SRF1Q12516 437 aa6.26□□□□□ -1.41
VPS1YKR001C KCC4P25389 1037 aa6.25□□□□□ -1.41
VPS1YKR001C MFT1P33441 392 aaKnown RBP6.25□□□□□ -1.41
VPS1YKR001C NOC2P39744 710 aaKnown RBP6.25□□□□□ -1.41
VPS1YKR001C BOI2P39969 1040 aa6.25□□□□□ -1.41
VPS1YKR001C YGL082WP53155 381 aa6.25□□□□□ -1.41
VPS1YKR001C TIM50Q02776 476 aa6.25□□□□□ -1.41
VPS1YKR001C YDL121CQ07541 149 aa6.25□□□□□ -1.41
VPS1YKR001C ALE1Q08548 619 aa6.25□□□□□ -1.41
VPS1YKR001C LSP1Q12230 341 aaKnown RBP6.25□□□□□ -1.41
VPS1YKR001C PHO87P25360 923 aa6.25□□□□□ -1.41
VPS1YKR001C MRF1P30775 413 aaPredicted RBP6.25□□□□□ -1.41
VPS1YKR001C GLC3P32775 704 aa6.25□□□□□ -1.41
VPS1YKR001C STE5P32917 917 aa6.25□□□□□ -1.41
VPS1YKR001C MAC1P35192 417 aa6.25□□□□□ -1.41
VPS1YKR001C PAM1P37304 830 aaKnown RBP6.25□□□□□ -1.41
VPS1YKR001C AKL1P38080 1108 aaKnown RBP6.25□□□□□ -1.41
VPS1YKR001C VPS27P40343 622 aaKnown RBP6.25□□□□□ -1.41
VPS1YKR001C PAP2P53632 584 aaKnown RBP6.25□□□□□ -1.41
VPS1YKR001C CEX1Q12453 761 aa6.25□□□□□ -1.41
VPS1YKR001C TY4A-HQ6Q5P6 413 aa6.25□□□□□ -1.41
VPS1YKR001C RPL17AP05740 184 aaKnown RBP6.24□□□□□ -1.41
VPS1YKR001C VMA4P22203 233 aaKnown RBP6.24□□□□□ -1.41
VPS1YKR001C SEC6P32844 805 aa6.24□□□□□ -1.41
VPS1YKR001C TOM20P35180 183 aa6.24□□□□□ -1.41
VPS1YKR001C MUM2P38236 366 aa6.24□□□□□ -1.41
VPS1YKR001C EAF7P53911 425 aaKnown RBP6.24□□□□□ -1.41
VPS1YKR001C SSP2Q08646 371 aa6.24□□□□□ -1.41
VPS1YKR001C TYW1Q08960 810 aaKnown RBP6.24□□□□□ -1.41
VPS1YKR001C TIF6Q12522 245 aaKnown RBP6.24□□□□□ -1.41
VPS1YKR001C PES4P39684 611 aa6.23□□□□□ -1.41
VPS1YKR001C TFG1P41895 735 aaPredicted RBP6.23□□□□□ -1.41
VPS1YKR001C BMS1Q08965 1183 aaKnown RBP6.23□□□□□ -1.41
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms