RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	TRM732	Q03496	1420 aa		4.05	□□□□□ -1.76
PEX1	YKL197C	HSC82	P15108	705 aa	Known RBP	4.05	□□□□□ -1.76
PEX1	YKL197C	MSH4	P40965	878 aa	Predicted RBP	4.05	□□□□□ -1.76
PEX1	YKL197C	HPC2	Q01448	625 aa		4.05	□□□□□ -1.76
PEX1	YKL197C	CDC45	Q08032	650 aa		4.05	□□□□□ -1.76
PEX1	YKL197C	DPS1	P04802	557 aa	Known RBP	4.05	□□□□□ -1.76
PEX1	YKL197C	PAM1	P37304	830 aa	Known RBP	4.05	□□□□□ -1.76
PEX1	YKL197C	PMC1	P38929	1173 aa	Predicted RBP	4.05	□□□□□ -1.76
PEX1	YKL197C	GDB1	Q06625	1536 aa		4.05	□□□□□ -1.76
PEX1	YKL197C	HXT5	P38695	592 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	RAD59	Q12223	238 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	PUS6	P53294	404 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	UBX5	Q06682	500 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	IMH1	Q06704	911 aa	Known RBP	4.04	□□□□□ -1.76
PEX1	YKL197C	DOP1	Q03921	1698 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	MRX12	P47084	519 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	YPR097W	Q06839	1073 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	YDL206W	Q12424	762 aa		4.04	□□□□□ -1.76
PEX1	YKL197C	VPS15	P22219	1454 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	LTV1	P34078	463 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	PES4	P39684	611 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	AIR1	P40507	360 aa	Known RBP	4.03	□□□□□ -1.76
PEX1	YKL197C	HXT10	P43581	546 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	TFB3	Q03290	321 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	YPR084W	Q06821	456 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	GEA2	P39993	1459 aa	Known RBP	4.03	□□□□□ -1.76
PEX1	YKL197C	POL5	P39985	1022 aa	Known RBP	4.03	□□□□□ -1.76
PEX1	YKL197C	RAD26	P40352	1085 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	RRD1	P40454	393 aa	Known RBP	4.03	□□□□□ -1.76
PEX1	YKL197C	SEC27	P41811	889 aa	Known RBP	4.03	□□□□□ -1.76
PEX1	YKL197C	RPA14	P50106	137 aa		4.03	□□□□□ -1.76
PEX1	YKL197C	PAP2	P53632	584 aa	Known RBP	4.03	□□□□□ -1.76
PEX1	YKL197C	PKH3	Q03306	898 aa	Predicted RBP	4.02	□□□□□ -1.77
PEX1	YKL197C	HEL2	Q05580	639 aa	Known RBP	4.02	□□□□□ -1.77
PEX1	YKL197C	JIP5	Q06214	492 aa	Predicted RBP	4.02	□□□□□ -1.77
PEX1	YKL197C	YBT1	P32386	1661 aa		4.02	□□□□□ -1.77
PEX1	YKL197C	OPY1	P38271	328 aa		4.02	□□□□□ -1.77
PEX1	YKL197C	OCA5	P38738	679 aa		4.02	□□□□□ -1.77
PEX1	YKL197C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
PEX1	YKL197C	TPS3	P38426	1054 aa	Known RBP	4.01	□□□□□ -1.77
PEX1	YKL197C	YNL058C	P53947	316 aa		4.01	□□□□□ -1.77
PEX1	YKL197C	BUD3	P25558	1636 aa		4.01	□□□□□ -1.77
PEX1	YKL197C	CMP2	P14747	604 aa		4.01	□□□□□ -1.77
PEX1	YKL197C	SLX8	P40072	274 aa		4.01	□□□□□ -1.77
PEX1	YKL197C	PRP3	Q03338	469 aa	Predicted RBP	4.01	□□□□□ -1.77
PEX1	YKL197C	CHC1	P22137	1653 aa	Known RBP	4.01	□□□□□ -1.77
PEX1	YKL197C	MRF1	P30775	413 aa	Predicted RBP	4.01	□□□□□ -1.77
PEX1	YKL197C	RPC82	P32349	654 aa		4	□□□□□ -1.77
PEX1	YKL197C	ALD3	P54114	506 aa		4	□□□□□ -1.77
PEX1	YKL197C	SYH1	Q02875	849 aa	Known RBP	4	□□□□□ -1.77
PEX1	YKL197C	NUP170	P38181	1502 aa		4	□□□□□ -1.77
PEX1	YKL197C	PHO87	P25360	923 aa		4	□□□□□ -1.77
PEX1	YKL197C	LAM1	P38851	1228 aa		4	□□□□□ -1.77
PEX1	YKL197C	BOI2	P39969	1040 aa		4	□□□□□ -1.77
PEX1	YKL197C	VID30	P53076	958 aa		4	□□□□□ -1.77
PEX1	YKL197C	NFI1	Q12216	726 aa		4	□□□□□ -1.77
PEX1	YKL197C	SNU66	Q12420	587 aa	Predicted RBP	4	□□□□□ -1.77
PEX1	YKL197C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4	□□□□□ -1.77	not detected
PEX1	YKL197C	TRM3	Q07527	1436 aa		4	□□□□□ -1.77
PEX1	YKL197C	NOP7	P53261	605 aa	Known RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	CTR9	P89105	1077 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	SVL3	Q03088	825 aa	Known RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	PUS5	Q06244	254 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	PDR10	P51533	1564 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	PET111	P08468	800 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	MAK16	P10962	306 aa	Predicted RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	VMA4	P22203	233 aa	Known RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	OCA1	P50946	238 aa	Predicted RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	TAN1	P53072	289 aa	Predicted RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	YDL121C	Q07541	149 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	AVO1	Q08236	1176 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	DNF2	Q12675	1612 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	PDR15	Q04182	1529 aa	Known RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	STH1	P32597	1359 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	VAC17	P25591	423 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	PWP2	P25635	923 aa	Known RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	RPL5	P26321	297 aa	Known RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	BIO2	P32451	375 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	HOS2	P53096	452 aa	Predicted RBP	3.99	□□□□□ -1.77
PEX1	YKL197C	CTF4	Q01454	927 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	ITT1	Q04638	464 aa		3.99	□□□□□ -1.77
PEX1	YKL197C	IME2	P32581	645 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	RKM3	P38222	552 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	GGA1	Q06336	557 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	MET32	Q12041	191 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	TY3B-G	Q99315	1547 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	ARG8	P18544	423 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	FIG4	P42837	879 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	BFA1	P47113	574 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	TIM11	P81449	96 aa	Predicted RBP	3.98	□□□□□ -1.77
PEX1	YKL197C	RSC2	Q06488	889 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	YPR172W	Q06608	200 aa		3.98	□□□□□ -1.77
PEX1	YKL197C	ERG12	P07277	443 aa		3.97	□□□□□ -1.77
PEX1	YKL197C	SEC23	P15303	768 aa	Known RBP	3.97	□□□□□ -1.77
PEX1	YKL197C	FRK1	Q03002	865 aa	Predicted RBP	3.97	□□□□□ -1.77
PEX1	YKL197C	SEC6	P32844	805 aa		3.97	□□□□□ -1.77
PEX1	YKL197C	BYE1	P36106	594 aa		3.97	□□□□□ -1.77
PEX1	YKL197C	ALD2	P47771	506 aa		3.97	□□□□□ -1.77
PEX1	YKL197C	BNI5	P53890	448 aa	Known RBP	3.97	□□□□□ -1.77
PEX1	YKL197C	RRP9	Q06506	573 aa	Known RBP	3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 99.2 ms