RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeastyeast

Gene NME1, Length 340 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NME1NME1 YNL011CP53980 444 aa12.46□□□□□ -0.41
NME1NME1 DAL1P32375 460 aa12.45□□□□□ -0.42
NME1NME1 GCD6P32501 712 aaKnown RBP12.45□□□□□ -0.42
NME1NME1 NUP85P46673 744 aa12.45□□□□□ -0.42
NME1NME1 LSC2P53312 427 aa12.45□□□□□ -0.42
NME1NME1 CDC55Q00362 526 aa12.45□□□□□ -0.42
NME1NME1 STB3Q12427 513 aa12.45□□□□□ -0.42
NME1NME1 PHO4P07270 312 aaKnown RBP12.44□□□□□ -0.42
NME1NME1 VTC4P47075 721 aa12.44□□□□□ -0.42
NME1NME1 RPS31P05759 152 aaKnown RBP12.43□□□□□ -0.42
NME1NME1 KAP122P32767 1081 aa12.43□□□□□ -0.42
NME1NME1 RAD55P38953 406 aa12.43□□□□□ -0.42
NME1NME1 SVF1Q05515 481 aa12.43□□□□□ -0.42
NME1NME1 YJR098CP47139 656 aa12.42□□□□□ -0.42
NME1NME1 SAM37P50110 327 aa12.42□□□□□ -0.42
NME1NME1 MTO1P53070 669 aa12.42□□□□□ -0.42
NME1NME1 YBR287WP38355 427 aa12.41□□□□□ -0.42
NME1NME1 MSN1P22148 382 aa12.4□□□□□ -0.42
NME1NME1 SLA1P32790 1244 aa12.4□□□□□ -0.42
NME1NME1 RPT1P33299 467 aaKnown RBP12.4□□□□□ -0.42
NME1NME1 TY1A-DR3Q12441 440 aa12.4□□□□□ -0.42
NME1NME1 MET1P36150 593 aa12.39□□□□□ -0.43
NME1NME1 NTA1P40354 457 aa12.39□□□□□ -0.43
NME1NME1 PDC6P26263 563 aaKnown RBP12.38□□□□□ -0.43
NME1NME1 DAK2P43550 591 aa12.38□□□□□ -0.43
NME1NME1 RSC4Q02206 625 aa12.38□□□□□ -0.43
NME1NME1 VPS35P34110 944 aa12.37□□□□□ -0.43
NME1NME1 BSC2Q05611 235 aa12.37□□□□□ -0.43
NME1NME1 ISW1P38144 1129 aa12.36□□□□□ -0.43
NME1NME1 CIC1P38779 376 aaKnown RBP12.36□□□□□ -0.43
NME1NME1 PSH1Q12161 406 aa12.36□□□□□ -0.43
NME1NME1 IRS4P36115 615 aaKnown RBP12.35□□□□□ -0.43
NME1NME1 GIP1P38229 639 aa12.35□□□□□ -0.43
NME1NME1 RGD2P43556 714 aa12.35□□□□□ -0.43
NME1NME1 NOC3Q07896 663 aaPredicted RBP12.35□□□□□ -0.43
NME1NME1 RPC31P17890 251 aa12.34□□□□□ -0.43
NME1NME1 YOR296WQ08748 1289 aa12.34□□□□□ -0.43
NME1NME1 TCB1Q12466 1186 aa12.34□□□□□ -0.43
NME1NME1 LEU1P07264 779 aaKnown RBP12.33□□□□□ -0.44
NME1NME1 TRK1P12685 1235 aa12.33□□□□□ -0.44
NME1NME1 PSY2P40164 858 aa12.33□□□□□ -0.44
NME1NME1 OXR1Q08952 273 aa12.33□□□□□ -0.44
NME1NME1 TIF6Q12522 245 aaKnown RBP12.33□□□□□ -0.44
NME1NME1 FYV10P40492 516 aa12.32□□□□□ -0.44
NME1NME1 NAP1P25293 417 aaKnown RBP12.31□□□□□ -0.44
NME1NME1 BSD2P38356 321 aa12.31□□□□□ -0.44
NME1NME1 UBP15P50101 1230 aa12.31□□□□□ -0.44
NME1NME1 UBP2Q01476 1272 aa12.3□□□□□ -0.44
NME1NME1 YLR346CQ06139 101 aa12.29□□□□□ -0.44
NME1NME1 MCM2P29469 868 aa12.28□□□□□ -0.44
NME1NME1 CUS1Q02554 436 aaPredicted RBP12.27□□□□□ -0.45
NME1NME1 JIP5Q06214 492 aaPredicted RBP12.27□□□□□ -0.45
NME1NME1 RGP1P16664 663 aa12.26□□□□□ -0.45
NME1NME1 GCR2Q01722 534 aa12.26□□□□□ -0.45
NME1NME1 AIM46P38885 310 aa12.25□□□□□ -0.45
NME1NME1 SKP1P52286 194 aa12.25□□□□□ -0.45
NME1NME1 SPR28Q04921 423 aa12.25□□□□□ -0.45
NME1NME1 AIM44Q99299 758 aa12.25□□□□□ -0.45
NME1NME1 YHL008CP38750 627 aa12.24□□□□□ -0.45
NME1NME1 BRE2P43132 505 aa12.24□□□□□ -0.45
NME1NME1 RMD1Q03441 430 aa12.24□□□□□ -0.45
NME1NME1 INP54Q08227 384 aaKnown RBP12.24□□□□□ -0.45
NME1NME1 NAB2P32505 525 aaKnown RBP RIP-Chip data12.22□□□□□ -0.45not detected
NME1NME1 RPS26AP39938 119 aaKnown RBP12.22□□□□□ -0.45
NME1NME1 RPS26BP39939 119 aaKnown RBP12.22□□□□□ -0.45
NME1NME1 YGR122WP53272 402 aa12.22□□□□□ -0.45
NME1NME1 CDC19P00549 500 aaKnown RBP12.21□□□□□ -0.45
NME1NME1 PEP7P32609 515 aa12.21□□□□□ -0.45
NME1NME1 ECM2P38241 364 aaKnown RBP12.2□□□□□ -0.46
NME1NME1 APM2P38700 605 aa12.2□□□□□ -0.46
NME1NME1 ESF1Q06344 628 aaKnown RBP12.2□□□□□ -0.46
NME1NME1 OPT2Q06593 877 aa12.2□□□□□ -0.46
NME1NME1 RPP1AP05318 106 aaPredicted RBP12.19□□□□□ -0.46
NME1NME1 EMG1Q06287 252 aaKnown RBP12.19□□□□□ -0.46
NME1NME1 FLP1P03870 423 aa12.18□□□□□ -0.46
NME1NME1 ORC1P54784 914 aaPredicted RBP12.18□□□□□ -0.46
NME1NME1 YCS4Q06156 1176 aa12.18□□□□□ -0.46
NME1NME1 MRPL16P38064 232 aa12.17□□□□□ -0.46
NME1NME1 ITC1P53125 1264 aa12.17□□□□□ -0.46
NME1NME1 DAL4Q04895 635 aa12.17□□□□□ -0.46
NME1NME1 CYC8P14922 966 aa12.16□□□□□ -0.46
NME1NME1 GLY1P37303 387 aaKnown RBP12.16□□□□□ -0.46
NME1NME1 NCL1P38205 684 aaKnown RBP12.16□□□□□ -0.46
NME1NME1 OSH7P38755 437 aa12.16□□□□□ -0.46
NME1NME1 YIL165CP40446 119 aa12.16□□□□□ -0.46
NME1NME1 SCW11P53189 542 aa12.15□□□□□ -0.46
NME1NME1 HXK1P04806 485 aaKnown RBP12.14□□□□□ -0.47
NME1NME1 MAD1P40957 749 aa12.14□□□□□ -0.47
NME1NME1 RAD2P07276 1031 aa12.13□□□□□ -0.47
NME1NME1 KAR2P16474 682 aaKnown RBP12.13□□□□□ -0.47
NME1NME1 FAA3P39002 694 aa12.13□□□□□ -0.47
NME1NME1 TOS4Q06266 489 aa12.13□□□□□ -0.47
NME1NME1 PRP40P33203 583 aaKnown RBP12.12□□□□□ -0.47
NME1NME1 CLN2P20438 545 aa12.11□□□□□ -0.47
NME1NME1 YNR040WP53736 256 aa12.11□□□□□ -0.47
NME1NME1 CTR9P89105 1077 aa12.11□□□□□ -0.47
NME1NME1 SRC1Q03707 834 aa12.1□□□□□ -0.47
NME1NME1 TY1A-BLQ12266 440 aa12.1□□□□□ -0.47
NME1NME1 PYC2P32327 1180 aaKnown RBP12.09□□□□□ -0.47
NME1NME1 MRPS18P42847 217 aa12.09□□□□□ -0.47
Retrieved 100 of 5,963 RNA–protein pairs in 8.7 ms