RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 SEPT9Q9UHD8 586 aaPredicted RBP13.26□□□□□ -0.29
DNMT1-219ENST00000589349 MAP3K4Q9Y6R4 1608 aa13.24□□□□□ -0.29
DNMT1-219ENST00000589349 EFCAB5A4FU69 1503 aa13.24□□□□□ -0.29
DNMT1-219ENST00000589349 RBM46Q8TBY0 533 aaKnown RBP13.24□□□□□ -0.29
DNMT1-219ENST00000589349 ZC3H15Q8WU90 426 aaKnown RBP13.24□□□□□ -0.29
DNMT1-219ENST00000589349 MMRN1Q13201 1228 aa13.23□□□□□ -0.29
DNMT1-219ENST00000589349 RNF166Q96A37 237 aaPredicted RBP13.23□□□□□ -0.29
DNMT1-219ENST00000589349 ADGRG1Q9Y653 693 aa13.23□□□□□ -0.29
DNMT1-219ENST00000589349 PPRC1Q5VV67 1664 aaKnown RBP13.22□□□□□ -0.29
DNMT1-219ENST00000589349 SMAPO00193 183 aa13.22□□□□□ -0.29
DNMT1-219ENST00000589349 OATP04181 439 aa13.22□□□□□ -0.29
DNMT1-219ENST00000589349 FECHP22830 423 aa13.22□□□□□ -0.29
DNMT1-219ENST00000589349 MAP2K5Q13163 448 aa13.22□□□□□ -0.29
DNMT1-219ENST00000589349 NUP153P49790 1475 aaKnown RBP13.22□□□□□ -0.29
DNMT1-219ENST00000589349 CDK11AQ9UQ88 783 aaPredicted RBP13.21□□□□□ -0.29
DNMT1-219ENST00000589349 ZFRQ96KR1 1074 aaKnown RBP13.2□□□□□ -0.3
DNMT1-219ENST00000589349 COL17A1Q9UMD9 1497 aaPredicted RBP13.2□□□□□ -0.3
DNMT1-219ENST00000589349 CFAP43Q8NDM7 1665 aa13.2□□□□□ -0.3
DNMT1-219ENST00000589349 FMN1Q68DA7 1419 aa13.2□□□□□ -0.3
DNMT1-219ENST00000589349 MAGI3Q5TCQ9 1506 aa13.19□□□□□ -0.3
DNMT1-219ENST00000589349 MINK1Q8N4C8 1332 aaPredicted RBP13.19□□□□□ -0.3
DNMT1-219ENST00000589349 C3orf80F5H4A9 247 aa13.19□□□□□ -0.3
DNMT1-219ENST00000589349 ZMYND10O75800 440 aa13.19□□□□□ -0.3
DNMT1-219ENST00000589349 ANKK1Q8NFD2 765 aa13.19□□□□□ -0.3
DNMT1-219ENST00000589349 WNT2BQ93097 391 aa13.19□□□□□ -0.3
DNMT1-219ENST00000589349 EYA1Q99502 592 aa13.19□□□□□ -0.3
DNMT1-219ENST00000589349 RAPGEF3O95398 923 aa13.18□□□□□ -0.3
DNMT1-219ENST00000589349 BARGINQ6ZT62 677 aa13.18□□□□□ -0.3
DNMT1-219ENST00000589349 ARHGAP35Q9NRY4 1499 aa13.17□□□□□ -0.3
DNMT1-219ENST00000589349 ARID4BQ4LE39 1312 aaPredicted RBP13.17□□□□□ -0.3
DNMT1-219ENST00000589349 HDGFP51858 240 aaKnown RBP13.17□□□□□ -0.3
DNMT1-219ENST00000589349 KCTD12Q96CX2 325 aaKnown RBP13.17□□□□□ -0.3
DNMT1-219ENST00000589349 PLSCR2Q9NRY7 297 aa13.17□□□□□ -0.3
DNMT1-219ENST00000589349 FAM161AQ3B820 660 aa13.16□□□□□ -0.3
DNMT1-219ENST00000589349 KRI1Q8N9T8 703 aaKnown RBP13.16□□□□□ -0.3
DNMT1-219ENST00000589349 CDK13Q14004 1512 aaKnown RBP13.16□□□□□ -0.3
DNMT1-219ENST00000589349 DNAJB2P25686 324 aa13.15□□□□□ -0.3
DNMT1-219ENST00000589349 METTL3Q86U44 580 aaKnown RBP13.15□□□□□ -0.3
DNMT1-219ENST00000589349 PXYLP1Q8TE99 480 aa13.15□□□□□ -0.3
DNMT1-219ENST00000589349 IRF6O14896 467 aa13.14□□□□□ -0.31
DNMT1-219ENST00000589349 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.13□□□□□ -0.31
DNMT1-219ENST00000589349 LRCH3Q96II8 777 aa13.13□□□□□ -0.31
DNMT1-219ENST00000589349 PHLDB1Q86UU1 1377 aa13.12□□□□□ -0.31
DNMT1-219ENST00000589349 SLC4A3P48751 1232 aa13.12□□□□□ -0.31
DNMT1-219ENST00000589349 THSD4Q6ZMP0 1018 aa13.12□□□□□ -0.31
DNMT1-219ENST00000589349 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.12□□□□□ -0.31
DNMT1-219ENST00000589349 HECW1Q76N89 1606 aa13.12□□□□□ -0.31
DNMT1-219ENST00000589349 ABCA9Q8IUA7 1624 aa13.12□□□□□ -0.31
DNMT1-219ENST00000589349 ADGRL1O94910 1474 aa13.11□□□□□ -0.31
DNMT1-219ENST00000589349 RCCD1A6NED2 376 aa13.11□□□□□ -0.31
DNMT1-219ENST00000589349 SOWAHBA6NEL2 793 aa13.11□□□□□ -0.31
DNMT1-219ENST00000589349 SAMD7Q7Z3H4 446 aa13.11□□□□□ -0.31
DNMT1-219ENST00000589349 CLIP1P30622 1438 aa13.11□□□□□ -0.31
DNMT1-219ENST00000589349 CCDC102AQ96A19 550 aa13.1□□□□□ -0.31
DNMT1-219ENST00000589349 EFCAB2Q5VUJ9 269 aa13.09□□□□□ -0.31
DNMT1-219ENST00000589349 TMEM134Q9H6X4 195 aa13.09□□□□□ -0.31
DNMT1-219ENST00000589349 FANCAO15360 1455 aa13.09□□□□□ -0.31
DNMT1-219ENST00000589349 NEO1Q92859 1461 aa13.09□□□□□ -0.31
DNMT1-219ENST00000589349 AKNAQ7Z591 1439 aa13.08□□□□□ -0.32
DNMT1-219ENST00000589349 ARAP3Q8WWN8 1544 aa13.08□□□□□ -0.32
DNMT1-219ENST00000589349 LOC105371045A0A1W2PR82 267 aa13.07□□□□□ -0.32
DNMT1-219ENST00000589349 BCAMP50895 628 aa13.07□□□□□ -0.32
DNMT1-219ENST00000589349 SWT1Q5T5J6 900 aaKnown RBP13.07□□□□□ -0.32
DNMT1-219ENST00000589349 SLF2Q8IX21 1173 aa13.07□□□□□ -0.32
DNMT1-219ENST00000589349 HCSTQ9UBK5 93 aa13.07□□□□□ -0.32
DNMT1-219ENST00000589349 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.07□□□□□ -0.32
DNMT1-219ENST00000589349 DENND4BO75064 1496 aaPredicted RBP13.06□□□□□ -0.32
DNMT1-219ENST00000589349 NECTIN2Q92692 538 aa13.06□□□□□ -0.32
DNMT1-219ENST00000589349 ZNF777Q9ULD5 760 aaPredicted RBP13.06□□□□□ -0.32
DNMT1-219ENST00000589349 MLECQ14165 292 aa13.05□□□□□ -0.32
DNMT1-219ENST00000589349 TTC37Q6PGP7 1564 aa13.04□□□□□ -0.32
DNMT1-219ENST00000589349 RNF40O75150 1001 aa13.04□□□□□ -0.32
DNMT1-219ENST00000589349 TSR3Q9UJK0 312 aaKnown RBP13.04□□□□□ -0.32
DNMT1-219ENST00000589349 TROQ12816 1431 aaPredicted RBP13.04□□□□□ -0.32
DNMT1-219ENST00000589349 CASKIN1Q8WXD9 1431 aa13.04□□□□□ -0.32
DNMT1-219ENST00000589349 PTPN5P54829 565 aa13.03□□□□□ -0.32
DNMT1-219ENST00000589349 AK7Q96M32 723 aa13.03□□□□□ -0.32
DNMT1-219ENST00000589349 HPS5Q9UPZ3 1129 aa13.03□□□□□ -0.32
DNMT1-219ENST00000589349 SCAPERQ9BY12 1400 aa13.03□□□□□ -0.32
DNMT1-219ENST00000589349 PHOX2BQ99453 314 aa13.02□□□□□ -0.33
DNMT1-219ENST00000589349 PLCH2O75038 1416 aa13.02□□□□□ -0.33
DNMT1-219ENST00000589349 ARHGAP5Q13017 1502 aa13.02□□□□□ -0.33
DNMT1-219ENST00000589349 PCF11O94913 1555 aaKnown RBP13.02□□□□□ -0.33
DNMT1-219ENST00000589349 CFAP74Q9C0B2 1584 aa13.02□□□□□ -0.33
DNMT1-219ENST00000589349 KIF14Q15058 1648 aa13.02□□□□□ -0.33
DNMT1-219ENST00000589349 PPP4CP60510 307 aa13.01□□□□□ -0.33
DNMT1-219ENST00000589349 NYAP1Q6ZVC0 841 aa13.01□□□□□ -0.33
DNMT1-219ENST00000589349 DAXXQ9UER7 740 aaPredicted RBP13.01□□□□□ -0.33
DNMT1-219ENST00000589349 CCDC18Q5T9S5 1454 aa13.01□□□□□ -0.33
DNMT1-219ENST00000589349 RSPH4AQ5TD94 716 aa12.99□□□□□ -0.33
DNMT1-219ENST00000589349 SLC24A3Q9HC58 644 aa12.99□□□□□ -0.33
DNMT1-219ENST00000589349 FYCO1Q9BQS8 1478 aa12.98□□□□□ -0.33
DNMT1-219ENST00000589349 CEP162Q5TB80 1403 aa12.98□□□□□ -0.33
DNMT1-219ENST00000589349 MTUS2Q5JR59 1369 aa12.98□□□□□ -0.33
DNMT1-219ENST00000589349 AFAP1Q8N556 730 aa12.98□□□□□ -0.33
DNMT1-219ENST00000589349 CLCN1P35523 988 aa12.97□□□□□ -0.33
DNMT1-219ENST00000589349 TPRNQ4KMQ1 711 aa12.97□□□□□ -0.33
DNMT1-219ENST00000589349 SULF1Q8IWU6 871 aa12.97□□□□□ -0.33
DNMT1-219ENST00000589349 NLRP7Q8WX94 980 aa12.97□□□□□ -0.33
DNMT1-219ENST00000589349 WBP1LQ9NX94 342 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms