RNA–Protein interactions for RNA: ENST00000534765.1

SF3B2-216, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 3,932 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-216ENST00000534765 UBR1Q8IWV7 1749 aa12.02□□□□□ -0.49
SF3B2-216ENST00000534765 KDM5AP29375 1690 aaKnown RBP12.02□□□□□ -0.49
SF3B2-216ENST00000534765 PARD3Q8TEW0 1356 aa12.02□□□□□ -0.49
SF3B2-216ENST00000534765 PLEKHH1Q9ULM0 1364 aa12.01□□□□□ -0.49
SF3B2-216ENST00000534765 ZFYVE9O95405 1425 aa12.01□□□□□ -0.49
SF3B2-216ENST00000534765 AMER1Q5JTC6 1135 aaPredicted RBP12□□□□□ -0.49
SF3B2-216ENST00000534765 TMF1P82094 1093 aa12□□□□□ -0.49
SF3B2-216ENST00000534765 PNISRQ8TF01 805 aaKnown RBP12□□□□□ -0.49
SF3B2-216ENST00000534765 SLC12A5Q9H2X9 1139 aa11.99□□□□□ -0.49
SF3B2-216ENST00000534765 METP08581 1390 aa11.99□□□□□ -0.49
SF3B2-216ENST00000534765 SLC52A1Q9NWF4 448 aa11.98□□□□□ -0.49
SF3B2-216ENST00000534765 FER1L4A9Z1Z3 1794 aa11.98□□□□□ -0.49
SF3B2-216ENST00000534765 WAPLQ7Z5K2 1190 aa11.98□□□□□ -0.49
SF3B2-216ENST00000534765 LTKP29376 864 aa11.97□□□□□ -0.49
SF3B2-216ENST00000534765 DNAJC5Q9H3Z4 198 aa11.97□□□□□ -0.49
SF3B2-216ENST00000534765 CABP2Q9NPB3 220 aa11.97□□□□□ -0.49
SF3B2-216ENST00000534765 NCKAP5LQ9HCH0 1330 aa11.97□□□□□ -0.49
SF3B2-216ENST00000534765 CENPJQ9HC77 1338 aaPredicted RBP11.96□□□□□ -0.49
SF3B2-216ENST00000534765 PPP4R2Q9NY27 417 aa11.96□□□□□ -0.49
SF3B2-216ENST00000534765 RIMS2Q9UQ26 1411 aa11.96□□□□□ -0.5
SF3B2-216ENST00000534765 IPO9Q96P70 1041 aaKnown RBP11.95□□□□□ -0.5
SF3B2-216ENST00000534765 RSPH6AQ9H0K4 717 aa11.95□□□□□ -0.5
SF3B2-216ENST00000534765 RPGRIP1LQ68CZ1 1315 aa11.95□□□□□ -0.5
SF3B2-216ENST00000534765 YTHDC2Q9H6S0 1430 aaKnown RBP11.94□□□□□ -0.5
SF3B2-216ENST00000534765 CD163L1Q9NR16 1453 aa11.94□□□□□ -0.5
SF3B2-216ENST00000534765 VGFO15240 615 aaPredicted RBP11.94□□□□□ -0.5
SF3B2-216ENST00000534765 HSP90AA2PQ14568 343 aaPredicted RBP11.94□□□□□ -0.5
SF3B2-216ENST00000534765 PRAM1Q96QH2 718 aa11.94□□□□□ -0.5
SF3B2-216ENST00000534765 LRPPRCP42704 1394 aaKnown RBP11.94□□□□□ -0.5
SF3B2-216ENST00000534765 MINK1Q8N4C8 1332 aaPredicted RBP11.93□□□□□ -0.5
SF3B2-216ENST00000534765 MYBBP1AQ9BQG0 1328 aaKnown RBP11.93□□□□□ -0.5
SF3B2-216ENST00000534765 STAC3Q96MF2 364 aa11.92□□□□□ -0.5
SF3B2-216ENST00000534765 TNRQ92752 1358 aa11.92□□□□□ -0.5
SF3B2-216ENST00000534765 FBLN1P23142 703 aa11.92□□□□□ -0.5
SF3B2-216ENST00000534765 RIMS1Q86UR5 1692 aaKnown RBP11.91□□□□□ -0.5
SF3B2-216ENST00000534765 SBNO2Q9Y2G9 1366 aa11.91□□□□□ -0.5
SF3B2-216ENST00000534765 ADAMTS13Q76LX8 1427 aa11.9□□□□□ -0.5
SF3B2-216ENST00000534765 PTPRUQ92729 1446 aa11.9□□□□□ -0.5
SF3B2-216ENST00000534765 KTN1Q86UP2 1357 aaKnown RBP11.9□□□□□ -0.5
SF3B2-216ENST00000534765 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.9□□□□□ -0.5
SF3B2-216ENST00000534765 PPP2R1AP30153 589 aa11.9□□□□□ -0.5
SF3B2-216ENST00000534765 STAG3Q9UJ98 1225 aa11.89□□□□□ -0.51
SF3B2-216ENST00000534765 EIF3AQ14152 1382 aaKnown RBP11.89□□□□□ -0.51
SF3B2-216ENST00000534765 TXNDC2Q86VQ3 553 aa11.89□□□□□ -0.51
SF3B2-216ENST00000534765 NSD3Q9BZ95 1437 aa11.88□□□□□ -0.51
SF3B2-216ENST00000534765 TNNT2P45379 298 aaPredicted RBP11.88□□□□□ -0.51
SF3B2-216ENST00000534765 TMC1Q8TDI8 760 aa11.88□□□□□ -0.51
SF3B2-216ENST00000534765 PPP6R1Q9UPN7 881 aa11.88□□□□□ -0.51
SF3B2-216ENST00000534765 SHPRHQ149N8 1683 aa11.88□□□□□ -0.51
SF3B2-216ENST00000534765 HSP90AA1P07900 732 aaKnown RBP11.88□□□□□ -0.51
SF3B2-216ENST00000534765 TMEM2Q9UHN6 1383 aa11.88□□□□□ -0.51
SF3B2-216ENST00000534765 SLC26A8Q96RN1 970 aa11.88□□□□□ -0.51
SF3B2-216ENST00000534765 ARID3AQ99856 593 aa11.88□□□□□ -0.51
SF3B2-216ENST00000534765 BRD4O60885 1362 aaPredicted RBP11.87□□□□□ -0.51
SF3B2-216ENST00000534765 ROBO2Q9HCK4 1378 aa11.87□□□□□ -0.51
SF3B2-216ENST00000534765 ADAMTS8Q9UP79 889 aa11.87□□□□□ -0.51
SF3B2-216ENST00000534765 A0A1W2PP64 1363 aa11.86□□□□□ -0.51
SF3B2-216ENST00000534765 PDE4CQ08493 712 aa11.86□□□□□ -0.51
SF3B2-216ENST00000534765 RALBP1Q15311 655 aa11.86□□□□□ -0.51
SF3B2-216ENST00000534765 CDCA7LQ96GN5 454 aa11.86□□□□□ -0.51
SF3B2-216ENST00000534765 NLRP1Q9C000 1473 aa11.86□□□□□ -0.51
SF3B2-216ENST00000534765 PPM1GO15355 546 aaPredicted RBP11.85□□□□□ -0.51
SF3B2-216ENST00000534765 RBM33Q96EV2 1170 aaKnown RBP11.85□□□□□ -0.51
SF3B2-216ENST00000534765 RGPD8O14715 1765 aaPredicted RBP11.85□□□□□ -0.51
SF3B2-216ENST00000534765 GSE1Q14687 1217 aa11.85□□□□□ -0.51
SF3B2-216ENST00000534765 NLRP13Q86W25 1043 aa11.85□□□□□ -0.51
SF3B2-216ENST00000534765 ZBED9Q6R2W3 1325 aa11.85□□□□□ -0.51
SF3B2-216ENST00000534765 ADAMTSL3P82987 1691 aa11.85□□□□□ -0.51
SF3B2-216ENST00000534765 KNSTRNQ9Y448 316 aa11.84□□□□□ -0.51
SF3B2-216ENST00000534765 ZRANB1Q9UGI0 708 aa11.84□□□□□ -0.51
SF3B2-216ENST00000534765 MED14O60244 1454 aa11.84□□□□□ -0.51
SF3B2-216ENST00000534765 DMRT2Q9Y5R5 561 aa11.84□□□□□ -0.51
SF3B2-216ENST00000534765 CDK19Q9BWU1 502 aa11.83□□□□□ -0.52
SF3B2-216ENST00000534765 PRR36Q9H6K5 1346 aa11.83□□□□□ -0.52
SF3B2-216ENST00000534765 NUTM2FA1L443 756 aa11.82□□□□□ -0.52
SF3B2-216ENST00000534765 SLC4A3P48751 1232 aa11.82□□□□□ -0.52
SF3B2-216ENST00000534765 ESF1Q9H501 851 aaKnown RBP11.82□□□□□ -0.52
SF3B2-216ENST00000534765 CCDC146Q8IYE0 955 aa11.82□□□□□ -0.52
SF3B2-216ENST00000534765 RBM10P98175 930 aaKnown RBP11.82□□□□□ -0.52
SF3B2-216ENST00000534765 KNDC1Q76NI1 1749 aa11.82□□□□□ -0.52
SF3B2-216ENST00000534765 CABP1Q9NZU7 370 aa11.82□□□□□ -0.52
SF3B2-216ENST00000534765 USP32Q8NFA0 1604 aa11.81□□□□□ -0.52
SF3B2-216ENST00000534765 ARHGAP23Q9P227 1491 aa11.81□□□□□ -0.52
SF3B2-216ENST00000534765 BLMP54132 1417 aaPredicted RBP11.81□□□□□ -0.52
SF3B2-216ENST00000534765 FRAT1Q92837 279 aaPredicted RBP11.81□□□□□ -0.52
SF3B2-216ENST00000534765 SPINK5Q9NQ38 1064 aaPredicted RBP11.81□□□□□ -0.52
SF3B2-216ENST00000534765 SRPK2P78362 688 aaKnown RBP11.81□□□□□ -0.52
SF3B2-216ENST00000534765 SLIT1O75093 1534 aa11.8□□□□□ -0.52
SF3B2-216ENST00000534765 GGNBP2Q9H3C7 697 aa11.8□□□□□ -0.52
SF3B2-216ENST00000534765 CPS1P31327 1500 aa11.8□□□□□ -0.52
SF3B2-216ENST00000534765 DLC1Q96QB1 1528 aa11.8□□□□□ -0.52
SF3B2-216ENST00000534765 PNNQ9H307 717 aaKnown RBP11.8□□□□□ -0.52
SF3B2-216ENST00000534765 EVC2Q86UK5 1308 aa11.79□□□□□ -0.52
SF3B2-216ENST00000534765 POGKQ9P215 609 aa11.79□□□□□ -0.52
SF3B2-216ENST00000534765 NKTRP30414 1462 aaKnown RBP11.79□□□□□ -0.52
SF3B2-216ENST00000534765 ABCC11Q96J66 1382 aa11.79□□□□□ -0.52
SF3B2-216ENST00000534765 CEP170BQ9Y4F5 1589 aaPredicted RBP11.79□□□□□ -0.52
SF3B2-216ENST00000534765 ANKRD36BQ8N2N9 1353 aa11.78□□□□□ -0.52
SF3B2-216ENST00000534765 FYB1O15117 783 aa11.78□□□□□ -0.52
SF3B2-216ENST00000534765 NPC1L1Q9UHC9 1359 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms