RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TYW1BQ6NUM6 668 aa6.32□□□□□ -1.4
CD44-226ENST00000527889 BCL2L12Q9HB09 334 aa6.32□□□□□ -1.4
CD44-226ENST00000527889 CDC42BPAQ5VT25 1732 aa6.32□□□□□ -1.4
CD44-226ENST00000527889 CARMIL2Q6F5E8 1435 aa6.32□□□□□ -1.4
CD44-226ENST00000527889 PRG4Q92954 1404 aaPredicted RBP6.32□□□□□ -1.4
CD44-226ENST00000527889 EPRSP07814 1512 aaKnown RBP6.31□□□□□ -1.4
CD44-226ENST00000527889 EHBP1L1Q8N3D4 1523 aa6.31□□□□□ -1.4
CD44-226ENST00000527889 CCDC18Q5T9S5 1454 aa6.31□□□□□ -1.4
CD44-226ENST00000527889 TRAK2O60296 914 aa6.31□□□□□ -1.4
CD44-226ENST00000527889 MS4A1P11836 297 aa6.31□□□□□ -1.4
CD44-226ENST00000527889 DMRTA1Q5VZB9 504 aa6.31□□□□□ -1.4
CD44-226ENST00000527889 GIGYF2Q6Y7W6 1299 aaKnown RBP6.31□□□□□ -1.4
CD44-226ENST00000527889 CLUAP1Q96AJ1 413 aa6.31□□□□□ -1.4
CD44-226ENST00000527889 RBM33Q96EV2 1170 aaKnown RBP6.31□□□□□ -1.4
CD44-226ENST00000527889 KCNK17Q96T54 332 aa6.31□□□□□ -1.4
CD44-226ENST00000527889 NUP153P49790 1475 aaKnown RBP6.3□□□□□ -1.4
CD44-226ENST00000527889 PLB1Q6P1J6 1458 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 KIF14Q15058 1648 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 ADCY10Q96PN6 1610 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 PBX2P40425 430 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 EN1Q05925 392 aaPredicted RBP6.3□□□□□ -1.4
CD44-226ENST00000527889 FAM69CQ0P6D2 419 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 PTGDRQ13258 359 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 TSR1Q2NL82 804 aaKnown RBP6.3□□□□□ -1.4
CD44-226ENST00000527889 PCMTD1Q96MG8 357 aaPredicted RBP6.3□□□□□ -1.4
CD44-226ENST00000527889 EPAS1Q99814 870 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 REPIN1Q9BWE0 567 aaKnown RBP6.3□□□□□ -1.4
CD44-226ENST00000527889 ITSN2Q9NZM3 1697 aa6.3□□□□□ -1.4
CD44-226ENST00000527889 ZCCHC11Q5TAX3 1644 aaKnown RBP6.29□□□□□ -1.4
CD44-226ENST00000527889 ARHGAP33O14559 1287 aa6.29□□□□□ -1.4
CD44-226ENST00000527889 COL9A1P20849 921 aa6.29□□□□□ -1.4
CD44-226ENST00000527889 CCDC82Q8N4S0 544 aa6.29□□□□□ -1.4
CD44-226ENST00000527889 FBXW7Q969H0 707 aa6.29□□□□□ -1.4
CD44-226ENST00000527889 CDHR5Q9HBB8 845 aa6.29□□□□□ -1.4
CD44-226ENST00000527889 PCDH10Q9P2E7 1040 aa6.29□□□□□ -1.4
CD44-226ENST00000527889 CDC42BPBQ9Y5S2 1711 aa6.28□□□□□ -1.4
CD44-226ENST00000527889 LSM11P83369 360 aaKnown RBP eCLIP6.28□□□□□ -1.4
CD44-226ENST00000527889 MCM6Q14566 821 aa6.28□□□□□ -1.4
CD44-226ENST00000527889 SH3D19Q5HYK7 790 aa6.28□□□□□ -1.4
CD44-226ENST00000527889 TMUB1Q9BVT8 246 aa6.28□□□□□ -1.4
CD44-226ENST00000527889 SRCAPQ6ZRS2 3230 aa6.28□□□□□ -1.4
CD44-226ENST00000527889 PTPN23Q9H3S7 1636 aa6.28□□□□□ -1.4
CD44-226ENST00000527889 MYO5CQ9NQX4 1742 aa6.28□□□□□ -1.4
CD44-226ENST00000527889 MAP3K7O43318 606 aa6.27□□□□□ -1.41
CD44-226ENST00000527889 PDIA4P13667 645 aaKnown RBP6.27□□□□□ -1.41
CD44-226ENST00000527889 PTPREP23469 700 aa6.27□□□□□ -1.41
CD44-226ENST00000527889 C6orf132Q5T0Z8 1188 aa6.27□□□□□ -1.41
CD44-226ENST00000527889 MTUS2Q5JR59 1369 aa6.27□□□□□ -1.41
CD44-226ENST00000527889 NPM2Q86SE8 214 aaKnown RBP6.26□□□□□ -1.41
CD44-226ENST00000527889 NCOA2Q15596 1464 aa6.26□□□□□ -1.41
CD44-226ENST00000527889 PTPRGP23470 1445 aa6.25□□□□□ -1.41
CD44-226ENST00000527889 RRBP1Q9P2E9 1410 aaKnown RBP6.25□□□□□ -1.41
CD44-226ENST00000527889 ABCC2Q92887 1545 aa6.25□□□□□ -1.41
CD44-226ENST00000527889 ANKRD13DQ6ZTN6 518 aa6.25□□□□□ -1.41
CD44-226ENST00000527889 ZBED2Q9BTP6 218 aa6.25□□□□□ -1.41
CD44-226ENST00000527889 PHLDB1Q86UU1 1377 aa6.25□□□□□ -1.41
CD44-226ENST00000527889 CROCC2H7BZ55 1655 aa6.25□□□□□ -1.41
CD44-226ENST00000527889 ADGBQ8N7X0 1667 aa6.24□□□□□ -1.41
CD44-226ENST00000527889 PPP1R3GB7ZBB8 358 aa6.24□□□□□ -1.41
CD44-226ENST00000527889 PROX2Q3B8N5 592 aa6.24□□□□□ -1.41
CD44-226ENST00000527889 ADGRD1Q6QNK2 874 aa6.24□□□□□ -1.41
CD44-226ENST00000527889 SPNS2Q8IVW8 549 aa6.24□□□□□ -1.41
CD44-226ENST00000527889 NECTIN2Q92692 538 aa6.24□□□□□ -1.41
CD44-226ENST00000527889 NPDC1Q9NQX5 325 aaPredicted RBP6.24□□□□□ -1.41
CD44-226ENST00000527889 PREX2Q70Z35 1606 aa6.24□□□□□ -1.41
CD44-226ENST00000527889 ATP10BO94823 1461 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 CCNB3Q8WWL7 1395 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 ZBTB7CA1YPR0 619 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 CLCN1P35523 988 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 SKIV2LQ15477 1246 aaKnown RBP6.23□□□□□ -1.41
CD44-226ENST00000527889 PROSER2Q86WR7 435 aaPredicted RBP6.23□□□□□ -1.41
CD44-226ENST00000527889 VPS9D1Q9Y2B5 631 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 UACAQ9BZF9 1416 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 GCC2Q8IWJ2 1684 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 TTC37Q6PGP7 1564 aa6.23□□□□□ -1.41
CD44-226ENST00000527889 HRO43593 1189 aa6.22□□□□□ -1.41
CD44-226ENST00000527889 FNBP4Q8N3X1 1017 aaPredicted RBP6.22□□□□□ -1.41
CD44-226ENST00000527889 GPCPD1Q9NPB8 672 aa6.22□□□□□ -1.41
CD44-226ENST00000527889 FAM198AQ9UFP1 575 aa6.22□□□□□ -1.41
CD44-226ENST00000527889 ZNF777Q9ULD5 760 aaPredicted RBP6.22□□□□□ -1.41
CD44-226ENST00000527889 TROQ12816 1431 aaPredicted RBP6.22□□□□□ -1.41
CD44-226ENST00000527889 MYOM3Q5VTT5 1437 aa6.22□□□□□ -1.41
CD44-226ENST00000527889 FGD6Q6ZV73 1430 aa6.22□□□□□ -1.41
CD44-226ENST00000527889 MED1Q15648 1581 aaPredicted RBP6.22□□□□□ -1.41
CD44-226ENST00000527889 TSPOAP1O95153 1857 aa6.22□□□□□ -1.41
CD44-226ENST00000527889 TK2O00142 265 aa6.21□□□□□ -1.42
CD44-226ENST00000527889 SSTR3P32745 418 aaPredicted RBP6.21□□□□□ -1.42
CD44-226ENST00000527889 MDM2Q00987 491 aaPredicted RBP6.21□□□□□ -1.42
CD44-226ENST00000527889 POM121Q96HA1 1249 aa6.21□□□□□ -1.42
CD44-226ENST00000527889 KCNH8Q96L42 1107 aa6.21□□□□□ -1.42
CD44-226ENST00000527889 PHOX2BQ99453 314 aa6.21□□□□□ -1.42
CD44-226ENST00000527889 SLC4A5Q9BY07 1137 aa6.21□□□□□ -1.42
CD44-226ENST00000527889 ABCC10Q5T3U5 1492 aa6.21□□□□□ -1.42
CD44-226ENST00000527889 DNMT1P26358 1616 aaKnown RBP6.21□□□□□ -1.42
CD44-226ENST00000527889 C3orf80F5H4A9 247 aa6.2□□□□□ -1.42
CD44-226ENST00000527889 ITGAEP38570 1179 aa6.2□□□□□ -1.42
CD44-226ENST00000527889 FAM50AQ14320 339 aaKnown RBP6.2□□□□□ -1.42
CD44-226ENST00000527889 PROCA1Q8NCQ7 364 aaPredicted RBP6.2□□□□□ -1.42
CD44-226ENST00000527889 TSKSQ9UJT2 592 aa6.2□□□□□ -1.42
CD44-226ENST00000527889 UHRF1BP1LA0JNW5 1464 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms