RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 AEBP2Q6ZN18 517 aaPredicted RBP14.6□□□□□ -0.07
CD44-226ENST00000527889 CHIC1Q5VXU3 224 aa14.13□□□□□ -0.15
CD44-226ENST00000527889 PHF23Q9BUL5 403 aaPredicted RBP12.48□□□□□ -0.41
CD44-226ENST00000527889 SENP3Q9H4L4 574 aaPredicted RBP12.29□□□□□ -0.44
CD44-226ENST00000527889 FOXD1Q16676 465 aa11.48□□□□□ -0.57
CD44-226ENST00000527889 PLPPR3Q6T4P5 718 aa11.4□□□□□ -0.58
CD44-226ENST00000527889 PPP6R1Q9UPN7 881 aa11.03□□□□□ -0.64
CD44-226ENST00000527889 ADRA2BP18089 450 aa11□□□□□ -0.65
CD44-226ENST00000527889 PIAS4Q8N2W9 510 aaPredicted RBP10.77□□□□□ -0.69
CD44-226ENST00000527889 MSH5O43196 834 aa10.53□□□□□ -0.72
CD44-226ENST00000527889 PPP4R3CPQ6ZMV5 832 aa10.07□□□□□ -0.8
CD44-226ENST00000527889 MAPK8IP2Q13387 824 aaPredicted RBP10.01□□□□□ -0.81
CD44-226ENST00000527889 SCAF1Q9H7N4 1312 aaKnown RBP9.93□□□□□ -0.82
CD44-226ENST00000527889 DMRT2Q9Y5R5 561 aa9.83□□□□□ -0.84
CD44-226ENST00000527889 KCNA4P22459 653 aa9.82□□□□□ -0.84
CD44-226ENST00000527889 CNKSR2Q8WXI2 1034 aa9.77□□□□□ -0.85
CD44-226ENST00000527889 POTEDQ86YR6 584 aa9.76□□□□□ -0.85
CD44-226ENST00000527889 NCBP3Q53F19 620 aaKnown RBP9.72□□□□□ -0.85
CD44-226ENST00000527889 NPM3O75607 178 aaKnown RBP9.67□□□□□ -0.86
CD44-226ENST00000527889 EHMT2Q96KQ7 1210 aa9.62□□□□□ -0.87
CD44-226ENST00000527889 RNF216Q9NWF9 866 aaPredicted RBP9.61□□□□□ -0.87
CD44-226ENST00000527889 HOXD11P31277 338 aaPredicted RBP9.6□□□□□ -0.87
CD44-226ENST00000527889 NISCHQ9Y2I1 1504 aa9.41□□□□□ -0.9
CD44-226ENST00000527889 DCAF8L1A6NGE4 600 aa9.37□□□□□ -0.91
CD44-226ENST00000527889 DNAJC5BQ9UF47 199 aa9.37□□□□□ -0.91
CD44-226ENST00000527889 CSRNP3Q8WYN3 585 aa9.29□□□□□ -0.92
CD44-226ENST00000527889 SLC4A1APQ9BWU0 796 aaKnown RBP9.28□□□□□ -0.92
CD44-226ENST00000527889 SLC4A2P04920 1241 aa9.18□□□□□ -0.94
CD44-226ENST00000527889 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.11□□□□□ -0.95
CD44-226ENST00000527889 ZBTB22O15209 634 aa9.07□□□□□ -0.96
CD44-226ENST00000527889 RNF39Q9H2S5 420 aa9.07□□□□□ -0.96
CD44-226ENST00000527889 U3KPZ7 1027 aaPredicted RBP9.03□□□□□ -0.96
CD44-226ENST00000527889 FOXD4L1Q9NU39 408 aa9□□□□□ -0.97
CD44-226ENST00000527889 C1QBPQ07021 282 aaKnown RBP8.91□□□□□ -0.98
CD44-226ENST00000527889 MYCNP04198 464 aaPredicted RBP8.89□□□□□ -0.99
CD44-226ENST00000527889 CACNB1Q02641 598 aaPredicted RBP8.84□□□□□ -0.99
CD44-226ENST00000527889 SPINK5Q9NQ38 1064 aaPredicted RBP8.8□□□□□ -1
CD44-226ENST00000527889 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.77□□□□□ -1.01
CD44-226ENST00000527889 HNRNPUL2Q1KMD3 747 aaKnown RBP8.77□□□□□ -1.01
CD44-226ENST00000527889 SAMD1Q6SPF0 538 aaPredicted RBP8.77□□□□□ -1.01
CD44-226ENST00000527889 DNAJC5Q9H3Z4 198 aa8.77□□□□□ -1.01
CD44-226ENST00000527889 ATF5Q9Y2D1 282 aaPredicted RBP8.75□□□□□ -1.01
CD44-226ENST00000527889 CAPN15O75808 1086 aa8.7□□□□□ -1.02
CD44-226ENST00000527889 TRHP20396 242 aaPredicted RBP8.67□□□□□ -1.02
CD44-226ENST00000527889 APLP2Q06481 763 aa8.66□□□□□ -1.02
CD44-226ENST00000527889 ATXN8OSP0DMR3 200 aa8.65□□□□□ -1.02
CD44-226ENST00000527889 ZNF219Q9P2Y4 722 aaPredicted RBP8.62□□□□□ -1.03
CD44-226ENST00000527889 DSG3P32926 999 aa8.61□□□□□ -1.03
CD44-226ENST00000527889 SLC24A1O60721 1099 aa8.6□□□□□ -1.03
CD44-226ENST00000527889 ABCB7O75027 752 aa8.58□□□□□ -1.04
CD44-226ENST00000527889 RTN4Q9NQC3 1192 aaKnown RBP8.57□□□□□ -1.04
CD44-226ENST00000527889 AMER1Q5JTC6 1135 aaPredicted RBP8.54□□□□□ -1.04
CD44-226ENST00000527889 POLA2Q14181 598 aa8.51□□□□□ -1.05
CD44-226ENST00000527889 MKRN4PQ13434 485 aaPredicted RBP8.36□□□□□ -1.07
CD44-226ENST00000527889 FKBP8Q14318 412 aa8.33□□□□□ -1.08
CD44-226ENST00000527889 CCDC180Q9P1Z9 1646 aa8.32□□□□□ -1.08
CD44-226ENST00000527889 ZBTB12Q9Y330 459 aaPredicted RBP8.3□□□□□ -1.08
CD44-226ENST00000527889 FBLN2P98095 1184 aa8.26□□□□□ -1.09
CD44-226ENST00000527889 OSCARQ8IYS5 282 aa8.26□□□□□ -1.09
CD44-226ENST00000527889 ABCC9O60706 1549 aa8.24□□□□□ -1.09
CD44-226ENST00000527889 RBM42Q9BTD8 480 aaKnown RBP8.13□□□□□ -1.11
CD44-226ENST00000527889 SPDYE2BA6NHP3 402 aa8.11□□□□□ -1.11
CD44-226ENST00000527889 SPDYE6P0CI01 402 aa8.11□□□□□ -1.11
CD44-226ENST00000527889 SPDYE2Q495Y8 402 aa8.11□□□□□ -1.11
CD44-226ENST00000527889 SSUH2Q9Y2M2 353 aa8.09□□□□□ -1.11
CD44-226ENST00000527889 SPDYE4A6NLX3 237 aa8.07□□□□□ -1.12
CD44-226ENST00000527889 ZNF692Q9BU19 519 aaPredicted RBP8.07□□□□□ -1.12
CD44-226ENST00000527889 AKT1S1Q96B36 256 aa8.05□□□□□ -1.12
CD44-226ENST00000527889 REM2Q8IYK8 340 aaPredicted RBP8.01□□□□□ -1.13
CD44-226ENST00000527889 PABPN1Q86U42 306 aaKnown RBP eCLIP7.99□□□□□ -1.13
CD44-226ENST00000527889 TRIM41Q8WV44 630 aa7.98□□□□□ -1.13
CD44-226ENST00000527889 PROM2Q8N271 834 aa7.97□□□□□ -1.13
CD44-226ENST00000527889 PITPNM1O00562 1244 aa7.93□□□□□ -1.14
CD44-226ENST00000527889 ZCCHC6Q5VYS8 1495 aaKnown RBP7.9□□□□□ -1.14
CD44-226ENST00000527889 SPDYE1Q8NFV5 336 aaPredicted RBP7.88□□□□□ -1.15
CD44-226ENST00000527889 PLCB2Q00722 1185 aa7.87□□□□□ -1.15
CD44-226ENST00000527889 CHRDL2Q6WN34 429 aa7.87□□□□□ -1.15
CD44-226ENST00000527889 FBXO3Q9UK99 471 aa7.86□□□□□ -1.15
CD44-226ENST00000527889 CLEC11AQ9Y240 323 aa7.85□□□□□ -1.15
CD44-226ENST00000527889 FXR2P51116 673 aaKnown RBP eCLIP7.78□□□□□ -1.16
CD44-226ENST00000527889 PIP4P2Q8N4L2 257 aa7.78□□□□□ -1.16
CD44-226ENST00000527889 VASPP50552 380 aaPredicted RBP7.77□□□□□ -1.17
CD44-226ENST00000527889 ILDR1Q86SU0 546 aaPredicted RBP7.77□□□□□ -1.17
CD44-226ENST00000527889 STAG3Q9UJ98 1225 aa7.77□□□□□ -1.17
CD44-226ENST00000527889 PRR29P0C7W0 189 aa7.76□□□□□ -1.17
CD44-226ENST00000527889 DCAF1Q9Y4B6 1507 aa7.75□□□□□ -1.17
CD44-226ENST00000527889 DCAF8L2P0C7V8 631 aa7.74□□□□□ -1.17
CD44-226ENST00000527889 HAP1P54257 671 aaPredicted RBP7.74□□□□□ -1.17
CD44-226ENST00000527889 CHADLQ6NUI6 762 aa7.72□□□□□ -1.17
CD44-226ENST00000527889 IFNLR1Q8IU57 520 aaPredicted RBP7.72□□□□□ -1.17
CD44-226ENST00000527889 CREBZFQ9NS37 354 aa7.72□□□□□ -1.17
CD44-226ENST00000527889 PRKAR2AP13861 404 aaKnown RBP7.7□□□□□ -1.18
CD44-226ENST00000527889 UNC13AQ9UPW8 1703 aa7.69□□□□□ -1.18
CD44-226ENST00000527889 POTEHQ6S545 545 aa7.69□□□□□ -1.18
CD44-226ENST00000527889 PKD2Q13563 968 aa7.68□□□□□ -1.18
CD44-226ENST00000527889 SHROOM4Q9ULL8 1493 aa7.68□□□□□ -1.18
CD44-226ENST00000527889 BCANQ96GW7 911 aa7.67□□□□□ -1.18
CD44-226ENST00000527889 NACADO15069 1562 aa7.67□□□□□ -1.18
CD44-226ENST00000527889 MNX1P50219 401 aaPredicted RBP7.65□□□□□ -1.18
CD44-226ENST00000527889 VSIG10Q8N0Z9 540 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms