RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 MARVELD3Q96A59 401 aa10.86□□□□□ -0.67
SMC4-212ENST00000470240 ERCC6L2Q5T890 1561 aa10.86□□□□□ -0.67
SMC4-212ENST00000470240 ZBED9Q6R2W3 1325 aa10.85□□□□□ -0.67
SMC4-212ENST00000470240 C11orf95C9JLR9 678 aaPredicted RBP10.85□□□□□ -0.67
SMC4-212ENST00000470240 EMP3P54852 163 aa10.85□□□□□ -0.67
SMC4-212ENST00000470240 BCANQ96GW7 911 aa10.85□□□□□ -0.67
SMC4-212ENST00000470240 CFAP44Q96MT7 982 aa10.85□□□□□ -0.67
SMC4-212ENST00000470240 GPHNQ9NQX3 736 aaPredicted RBP10.85□□□□□ -0.67
SMC4-212ENST00000470240 KDM2AQ9Y2K7 1162 aa10.85□□□□□ -0.67
SMC4-212ENST00000470240 MAGI2Q86UL8 1455 aa10.85□□□□□ -0.67
SMC4-212ENST00000470240 RTEL1-TNFRSF6BF6WH68 1400 aa10.84□□□□□ -0.67
SMC4-212ENST00000470240 TRPM1Q7Z4N2 1603 aa10.84□□□□□ -0.67
SMC4-212ENST00000470240 BCORL1Q5H9F3 1711 aa10.84□□□□□ -0.67
SMC4-212ENST00000470240 PAXIP1Q6ZW49 1069 aaPredicted RBP10.84□□□□□ -0.67
SMC4-212ENST00000470240 FAM9BQ8IZU0 186 aa10.84□□□□□ -0.67
SMC4-212ENST00000470240 PRAG1Q86YV5 1406 aa10.84□□□□□ -0.67
SMC4-212ENST00000470240 ATP10AO60312 1499 aa10.83□□□□□ -0.68
SMC4-212ENST00000470240 KANK1Q14678 1352 aa10.83□□□□□ -0.68
SMC4-212ENST00000470240 ZSWIM6Q9HCJ5 1215 aa10.83□□□□□ -0.68
SMC4-212ENST00000470240 SPAG9O60271 1321 aaKnown RBP10.82□□□□□ -0.68
SMC4-212ENST00000470240 WDR7Q9Y4E6 1490 aa10.81□□□□□ -0.68
SMC4-212ENST00000470240 HOXB1P14653 301 aaPredicted RBP10.81□□□□□ -0.68
SMC4-212ENST00000470240 PDE4AP27815 886 aa10.81□□□□□ -0.68
SMC4-212ENST00000470240 FOXK1P85037 733 aa10.81□□□□□ -0.68
SMC4-212ENST00000470240 RALBP1Q15311 655 aa10.81□□□□□ -0.68
SMC4-212ENST00000470240 STAC3Q96MF2 364 aa10.81□□□□□ -0.68
SMC4-212ENST00000470240 DHX29Q7Z478 1369 aaKnown RBP10.8□□□□□ -0.68
SMC4-212ENST00000470240 E9PCH4 1651 aa10.8□□□□□ -0.68
SMC4-212ENST00000470240 PLPP6Q8IY26 295 aa10.8□□□□□ -0.68
SMC4-212ENST00000470240 GPRASP1Q5JY77 1395 aa10.79□□□□□ -0.68
SMC4-212ENST00000470240 DSG2Q14126 1118 aa10.79□□□□□ -0.68
SMC4-212ENST00000470240 TMC1Q8TDI8 760 aa10.79□□□□□ -0.68
SMC4-212ENST00000470240 CRISPLD2Q9H0B8 497 aa10.79□□□□□ -0.68
SMC4-212ENST00000470240 ZFYVE16Q7Z3T8 1539 aa10.79□□□□□ -0.68
SMC4-212ENST00000470240 ABCA9Q8IUA7 1624 aa10.78□□□□□ -0.68
SMC4-212ENST00000470240 ST20-MTHFSA0A0A6YYL1 179 aa10.78□□□□□ -0.68
SMC4-212ENST00000470240 A2MP01023 1474 aa10.78□□□□□ -0.68
SMC4-212ENST00000470240 MYBBP1AQ9BQG0 1328 aaKnown RBP10.78□□□□□ -0.68
SMC4-212ENST00000470240 PRDM15P57071 1507 aaPredicted RBP10.78□□□□□ -0.68
SMC4-212ENST00000470240 BRD4O60885 1362 aaPredicted RBP10.77□□□□□ -0.68
SMC4-212ENST00000470240 CFAP74Q9C0B2 1584 aa10.77□□□□□ -0.68
SMC4-212ENST00000470240 TET3O43151 1660 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 FANCAO15360 1455 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 ARSIQ5FYB1 569 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 LARP6Q9BRS8 491 aaKnown RBP10.77□□□□□ -0.69
SMC4-212ENST00000470240 TSHZ2Q9NRE2 1034 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 CEP152O94986 1710 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 SPHKAPQ2M3C7 1700 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 ATP7AQ04656 1500 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 NCKAP5LQ9HCH0 1330 aa10.77□□□□□ -0.69
SMC4-212ENST00000470240 DEPDC5O75140 1603 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 TRAPPC8Q9Y2L5 1435 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 TRPM2O94759 1503 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 FAM205CA6NFA0 338 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 TMF1P82094 1093 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 RGL3Q3MIN7 710 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 PPP1R15BQ5SWA1 713 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 MYT1LQ9UL68 1186 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 INO80Q9ULG1 1556 aaPredicted RBP10.76□□□□□ -0.69
SMC4-212ENST00000470240 WASHC2CQ9Y4E1 1318 aa10.76□□□□□ -0.69
SMC4-212ENST00000470240 RNF17Q9BXT8 1623 aaKnown RBP10.76□□□□□ -0.69
SMC4-212ENST00000470240 SMG6Q86US8 1419 aaKnown RBP10.75□□□□□ -0.69
SMC4-212ENST00000470240 COL17A1Q9UMD9 1497 aaPredicted RBP10.75□□□□□ -0.69
SMC4-212ENST00000470240 SLC34A2O95436 690 aa10.75□□□□□ -0.69
SMC4-212ENST00000470240 CDCA8Q53HL2 280 aa10.75□□□□□ -0.69
SMC4-212ENST00000470240 GPR153Q6NV75 609 aa10.75□□□□□ -0.69
SMC4-212ENST00000470240 DDX27Q96GQ7 796 aaKnown RBP10.75□□□□□ -0.69
SMC4-212ENST00000470240 PPP4R2Q9NY27 417 aa10.75□□□□□ -0.69
SMC4-212ENST00000470240 ERBB3P21860 1342 aa10.75□□□□□ -0.69
SMC4-212ENST00000470240 ADGRL1O94910 1474 aa10.74□□□□□ -0.69
SMC4-212ENST00000470240 PCDH10Q9P2E7 1040 aa10.74□□□□□ -0.69
SMC4-212ENST00000470240 EIF3AQ14152 1382 aaKnown RBP10.74□□□□□ -0.69
SMC4-212ENST00000470240 PLA2R1Q13018 1463 aa10.74□□□□□ -0.69
SMC4-212ENST00000470240 NEURL4Q96JN8 1562 aa10.73□□□□□ -0.69
SMC4-212ENST00000470240 CCDC184Q52MB2 194 aa10.73□□□□□ -0.69
SMC4-212ENST00000470240 CADPS2Q86UW7 1296 aa10.73□□□□□ -0.69
SMC4-212ENST00000470240 PCDHGA4Q9Y5G9 962 aa10.73□□□□□ -0.69
SMC4-212ENST00000470240 NLRP13Q86W25 1043 aa10.72□□□□□ -0.69
SMC4-212ENST00000470240 CDAN1Q8IWY9 1227 aa10.72□□□□□ -0.69
SMC4-212ENST00000470240 KHSRPQ92945 711 aaKnown RBP eCLIP10.72□□□□□ -0.693e-15■■■■■ 43.1
SMC4-212ENST00000470240 HS3ST6Q96QI5 342 aa10.72□□□□□ -0.69
SMC4-212ENST00000470240 NUDCQ9Y266 331 aa10.72□□□□□ -0.69
SMC4-212ENST00000470240 CNGB1Q14028 1251 aaPredicted RBP10.71□□□□□ -0.69
SMC4-212ENST00000470240 MADDQ8WXG6 1647 aa10.71□□□□□ -0.69
SMC4-212ENST00000470240 KIAA1210Q9ULL0 1709 aa10.7□□□□□ -0.7
SMC4-212ENST00000470240 PTPRTO14522 1441 aa10.7□□□□□ -0.7
SMC4-212ENST00000470240 SCAPERQ9BY12 1400 aa10.7□□□□□ -0.7
SMC4-212ENST00000470240 TBC1D12O60347 775 aa10.7□□□□□ -0.7
SMC4-212ENST00000470240 NUDT7P0C024 238 aa10.7□□□□□ -0.7
SMC4-212ENST00000470240 IQGAP1P46940 1657 aa10.69□□□□□ -0.7
SMC4-212ENST00000470240 ZMYM4Q5VZL5 1548 aa10.69□□□□□ -0.7
SMC4-212ENST00000470240 ZNF518AQ6AHZ1 1483 aa10.69□□□□□ -0.7
SMC4-212ENST00000470240 ASXL2Q76L83 1435 aa10.69□□□□□ -0.7
SMC4-212ENST00000470240 PNISRQ8TF01 805 aaKnown RBP10.69□□□□□ -0.7
SMC4-212ENST00000470240 UPF1Q92900 1129 aaKnown RBP eCLIP10.69□□□□□ -0.71e-11■■■■□ 26.2
SMC4-212ENST00000470240 KIF1BO60333 1816 aa10.69□□□□□ -0.7
SMC4-212ENST00000470240 CLTCL1P53675 1640 aa10.69□□□□□ -0.7
SMC4-212ENST00000470240 VWDEQ8N2E2 1590 aa10.69□□□□□ -0.7
SMC4-212ENST00000470240 INSRP06213 1382 aa10.68□□□□□ -0.7
SMC4-212ENST00000470240 PARD3Q8TEW0 1356 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms