RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C YOR192C-CQ3E736 78 aa-0.74□□□□□ -2.53
NIP1YMR309C KSH1Q8TGJ3 72 aa-0.74□□□□□ -2.53
NIP1YMR309C TSC11P40061 1430 aa-0.74□□□□□ -2.53
NIP1YMR309C VPS15P22219 1454 aa-0.74□□□□□ -2.53
NIP1YMR309C REV3P14284 1504 aa-0.74□□□□□ -2.53
NIP1YMR309C PDR11P40550 1411 aa-0.74□□□□□ -2.53
NIP1YMR309C POL1P13382 1468 aa-0.75□□□□□ -2.53
NIP1YMR309C GEA2P39993 1459 aaKnown RBP-0.75□□□□□ -2.53
NIP1YMR309C APC1P53886 1748 aa-0.76□□□□□ -2.53
NIP1YMR309C YOR304C-AO14468 76 aa-0.76□□□□□ -2.53
NIP1YMR309C FPR2P32472 135 aa-0.76□□□□□ -2.53
NIP1YMR309C RRT15Q3E811 62 aa-0.77□□□□□ -2.53
NIP1YMR309C THO2P53552 1597 aaKnown RBP-0.77□□□□□ -2.53
NIP1YMR309C BCK1Q01389 1478 aa-0.77□□□□□ -2.53
NIP1YMR309C KOG1P38873 1557 aa-0.78□□□□□ -2.53
NIP1YMR309C YSP2Q06681 1438 aa-0.78□□□□□ -2.53
NIP1YMR309C GDB1Q06625 1536 aa-0.78□□□□□ -2.53
NIP1YMR309C RPS12P48589 143 aaKnown RBP-0.78□□□□□ -2.53
NIP1YMR309C PAU23Q07987 124 aa-0.78□□□□□ -2.53
NIP1YMR309C PAU17Q12370 124 aa-0.78□□□□□ -2.53
NIP1YMR309C MHF2Q3E829 80 aa-0.78□□□□□ -2.53
NIP1YMR309C IRC20Q06554 1556 aa-0.79□□□□□ -2.54
NIP1YMR309C TOS6P48560 102 aa-0.79□□□□□ -2.54
NIP1YMR309C PDR10P51533 1564 aa-0.79□□□□□ -2.54
NIP1YMR309C RPS27AP35997 82 aaKnown RBP-0.79□□□□□ -2.54
NIP1YMR309C LSM2P38203 95 aaKnown RBP-0.79□□□□□ -2.54
NIP1YMR309C TY3B-GQ99315 1547 aa-0.8□□□□□ -2.54
NIP1YMR309C POC4Q12245 148 aaPredicted RBP-0.8□□□□□ -2.54
NIP1YMR309C NOP10Q6Q547 58 aaPredicted RBP-0.8□□□□□ -2.54
NIP1YMR309C MDS3P53094 1487 aa-0.8□□□□□ -2.54
NIP1YMR309C DNF1P32660 1571 aa-0.8□□□□□ -2.54
NIP1YMR309C IRA2P19158 3079 aa-0.8□□□□□ -2.54
NIP1YMR309C YDR042CQ03205 200 aa-0.8□□□□□ -2.54
NIP1YMR309C SUS1Q6WNK7 96 aa-0.8□□□□□ -2.54
NIP1YMR309C FYV7Q12247 151 aa-0.81□□□□□ -2.54
NIP1YMR309C YGL258W-AQ3E740 77 aa-0.81□□□□□ -2.54
NIP1YMR309C SMC4Q12267 1418 aa-0.81□□□□□ -2.54
NIP1YMR309C MSL1P40567 111 aaPredicted RBP-0.81□□□□□ -2.54
NIP1YMR309C SIP18P50263 79 aa-0.81□□□□□ -2.54
NIP1YMR309C OLI1P61829 76 aa-0.81□□□□□ -2.54
NIP1YMR309C SWR1Q05471 1514 aa-0.82□□□□□ -2.54
NIP1YMR309C ULS1Q08562 1619 aa-0.83□□□□□ -2.54
NIP1YMR309C SCP1Q08873 200 aa-0.83□□□□□ -2.54
NIP1YMR309C YIL156W-BQ2V2P4 73 aa-0.84□□□□□ -2.54
NIP1YMR309C GCN2P15442 1659 aa-0.84□□□□□ -2.54
NIP1YMR309C DNF2Q12675 1612 aa-0.85□□□□□ -2.54
NIP1YMR309C YER137CP40083 148 aaKnown RBP-0.85□□□□□ -2.54
NIP1YMR309C YMR082CQ04276 118 aa-0.85□□□□□ -2.54
NIP1YMR309C YOR394C-AQ8TGJ0 55 aa-0.85□□□□□ -2.55
NIP1YMR309C IRA1P18963 3092 aa-0.86□□□□□ -2.55
NIP1YMR309C YPL225WQ08971 146 aaKnown RBP-0.86□□□□□ -2.55
NIP1YMR309C HAP1P0CE41 1502 aa-0.86□□□□□ -2.55
NIP1YMR309C TY1B-DR4Q07793 1604 aa-0.86□□□□□ -2.55
NIP1YMR309C ATP17Q06405 101 aa-0.86□□□□□ -2.55
NIP1YMR309C YLL006W-AQ3E814 58 aa-0.86□□□□□ -2.55
NIP1YMR309C RPO31P04051 1460 aa-0.86□□□□□ -2.55
NIP1YMR309C YDL022C-AP0C5L6 82 aa-0.87□□□□□ -2.55
NIP1YMR309C YBR200W-AQ3E755 54 aa-0.87□□□□□ -2.55
NIP1YMR309C YOR011W-AQ3E807 68 aa-0.87□□□□□ -2.55
NIP1YMR309C YHR073W-AP0C5N7 58 aa-0.87□□□□□ -2.55
NIP1YMR309C YKL065W-AQ2V2P2 73 aa-0.87□□□□□ -2.55
NIP1YMR309C YMR175W-AQ3E766 64 aa-0.87□□□□□ -2.55
NIP1YMR309C YOR105WQ08504 108 aa-0.88□□□□□ -2.55
NIP1YMR309C YBR230W-AQ3E762 66 aa-0.88□□□□□ -2.55
NIP1YMR309C FKS3Q04952 1785 aa-0.89□□□□□ -2.55
NIP1YMR309C RPL29P05747 59 aaPredicted RBP-0.89□□□□□ -2.55
NIP1YMR309C RRP5Q05022 1729 aaKnown RBP-0.89□□□□□ -2.55
NIP1YMR309C YLR146W-AQ2V2P1 62 aa-0.89□□□□□ -2.55
NIP1YMR309C FLO1P32768 1537 aa-0.9□□□□□ -2.55
NIP1YMR309C SIN3P22579 1536 aa-0.9□□□□□ -2.55
NIP1YMR309C YOR314WQ12506 109 aa-0.9□□□□□ -2.55
NIP1YMR309C YGR146C-AQ8TGT9 53 aa-0.9□□□□□ -2.55
NIP1YMR309C YBL039W-BP0C268 59 aa-0.91□□□□□ -2.56
NIP1YMR309C SSK2P53599 1579 aa-0.92□□□□□ -2.56
NIP1YMR309C YOR093CQ12275 1648 aa-0.92□□□□□ -2.56
NIP1YMR309C PDR12Q02785 1511 aa-0.92□□□□□ -2.56
NIP1YMR309C YCL001W-BQ96VH2 84 aa-0.92□□□□□ -2.56
NIP1YMR309C PDR5P33302 1511 aaKnown RBP-0.92□□□□□ -2.56
NIP1YMR309C YDR034C-AP0C289 58 aa-0.93□□□□□ -2.56
NIP1YMR309C YGL194C-AQ2V2P6 80 aa-0.93□□□□□ -2.56
NIP1YMR309C RPS27BP38711 82 aa-0.93□□□□□ -2.56
NIP1YMR309C YCF1P39109 1515 aaKnown RBP-0.93□□□□□ -2.56
NIP1YMR309C YOR316C-AQ3E806 69 aa-0.94□□□□□ -2.56
NIP1YMR309C NUP188P52593 1655 aaKnown RBP-0.94□□□□□ -2.56
NIP1YMR309C YBT1P32386 1661 aa-0.94□□□□□ -2.56
NIP1YMR309C STU1P38198 1513 aa-0.94□□□□□ -2.56
NIP1YMR309C TCB3Q03640 1545 aaKnown RBP-0.94□□□□□ -2.56
NIP1YMR309C MMS22Q06164 1454 aa-0.94□□□□□ -2.56
NIP1YMR309C MLP1Q02455 1875 aaKnown RBP-0.94□□□□□ -2.56
NIP1YMR309C YGR121W-AQ3E816 71 aa-0.95□□□□□ -2.56
NIP1YMR309C ESC1Q03661 1658 aaKnown RBP-0.95□□□□□ -2.56
NIP1YMR309C QCR9P22289 66 aa-0.95□□□□□ -2.56
NIP1YMR309C HIR3P47171 1648 aa-0.95□□□□□ -2.56
NIP1YMR309C ZEO1Q08245 113 aa-0.96□□□□□ -2.56
NIP1YMR309C YGR035W-AQ45U48 73 aa-0.96□□□□□ -2.56
NIP1YMR309C CDC25P04821 1589 aa-0.96□□□□□ -2.56
NIP1YMR309C SNQ2P32568 1501 aaKnown RBP-0.97□□□□□ -2.56
NIP1YMR309C TIM12P32830 109 aa-0.97□□□□□ -2.56
NIP1YMR309C SPI1P40092 148 aa-0.97□□□□□ -2.56
NIP1YMR309C YPR145C-AQ2V2P0 78 aa-0.97□□□□□ -2.56
Retrieved 100 of 5,963 RNA–protein pairs in 159.4 ms