RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C YPK9Q12697 1472 aa6.47□□□□□ -1.37
EAR1YMR171C RAS1P01119 309 aa6.46□□□□□ -1.37
EAR1YMR171C PUF6Q04373 656 aaKnown RBP6.46□□□□□ -1.37
EAR1YMR171C NTH2P35172 780 aa6.45□□□□□ -1.38
EAR1YMR171C YBL086CP38177 466 aa6.45□□□□□ -1.38
EAR1YMR171C SSF1P38789 453 aaPredicted RBP6.45□□□□□ -1.38
EAR1YMR171C SPT2P06843 333 aaPredicted RBP6.45□□□□□ -1.38
EAR1YMR171C UTR2P32623 467 aa6.45□□□□□ -1.38
EAR1YMR171C DFG5Q05031 458 aa6.44□□□□□ -1.38
EAR1YMR171C MET32Q12041 191 aa6.44□□□□□ -1.38
EAR1YMR171C RKR1Q04781 1562 aa6.44□□□□□ -1.38
EAR1YMR171C STE6P12866 1290 aa6.43□□□□□ -1.38
EAR1YMR171C VAN1P23642 535 aa6.43□□□□□ -1.38
EAR1YMR171C SWI5P08153 709 aa6.42□□□□□ -1.38
EAR1YMR171C RPS6AP0CX37 236 aaKnown RBP6.42□□□□□ -1.38
EAR1YMR171C RPS6BP0CX38 236 aaPredicted RBP6.42□□□□□ -1.38
EAR1YMR171C MYO4P32492 1471 aa6.42□□□□□ -1.38
EAR1YMR171C UFD4P33202 1483 aa6.42□□□□□ -1.38
EAR1YMR171C BPT1P14772 1559 aa6.42□□□□□ -1.38
EAR1YMR171C DAT1P13483 248 aaKnown RBP6.42□□□□□ -1.38
EAR1YMR171C PNP1Q05788 311 aa6.42□□□□□ -1.38
EAR1YMR171C PUN1Q06991 263 aa6.42□□□□□ -1.38
EAR1YMR171C CYT1P07143 309 aa6.41□□□□□ -1.38
EAR1YMR171C UBP1P25037 809 aa6.41□□□□□ -1.38
EAR1YMR171C AIR1P40507 360 aaKnown RBP6.41□□□□□ -1.38
EAR1YMR171C KAR5Q04746 504 aa6.41□□□□□ -1.38
EAR1YMR171C BDS1Q08347 646 aa6.41□□□□□ -1.38
EAR1YMR171C TRS33Q99394 268 aa6.41□□□□□ -1.38
EAR1YMR171C YOR1P53049 1477 aa6.4□□□□□ -1.38
EAR1YMR171C SRS2P12954 1174 aa6.4□□□□□ -1.38
EAR1YMR171C TBS1P38114 1094 aa6.4□□□□□ -1.38
EAR1YMR171C SUV3P32580 737 aa6.39□□□□□ -1.39
EAR1YMR171C WTM2Q12206 467 aa6.39□□□□□ -1.39
EAR1YMR171C YBL113CQ7M4S9 792 aa6.39□□□□□ -1.39
EAR1YMR171C SLD2P34252 453 aa6.39□□□□□ -1.39
EAR1YMR171C ALD4P46367 519 aaKnown RBP6.39□□□□□ -1.39
EAR1YMR171C SCC2Q04002 1493 aa6.38□□□□□ -1.39
EAR1YMR171C RPP2BP02400 110 aaKnown RBP6.38□□□□□ -1.39
EAR1YMR171C CDC4P07834 779 aa6.38□□□□□ -1.39
EAR1YMR171C ERP5P38819 212 aa6.38□□□□□ -1.39
EAR1YMR171C BOL3P39724 118 aa6.38□□□□□ -1.39
EAR1YMR171C NGR1P32831 672 aaKnown RBP6.37□□□□□ -1.39
EAR1YMR171C SEN54Q02825 467 aaPredicted RBP6.37□□□□□ -1.39
EAR1YMR171C DPS1P04802 557 aaKnown RBP6.36□□□□□ -1.39
EAR1YMR171C RTT106P40161 455 aa6.36□□□□□ -1.39
EAR1YMR171C TRM732Q03496 1420 aa6.36□□□□□ -1.39
EAR1YMR171C MLP2P40457 1679 aa6.36□□□□□ -1.39
EAR1YMR171C CWH41P53008 833 aa6.36□□□□□ -1.39
EAR1YMR171C FUR4P05316 633 aaKnown RBP6.35□□□□□ -1.39
EAR1YMR171C TRL1P09880 827 aaKnown RBP6.35□□□□□ -1.39
EAR1YMR171C AFT1P22149 690 aa6.35□□□□□ -1.39
EAR1YMR171C UGA3P26370 528 aa6.35□□□□□ -1.39
EAR1YMR171C ASH1P34233 588 aa6.35□□□□□ -1.39
EAR1YMR171C DLD3P39976 496 aaKnown RBP6.35□□□□□ -1.39
EAR1YMR171C UTP7P40055 554 aaKnown RBP6.35□□□□□ -1.39
EAR1YMR171C MSB3P48566 633 aaPredicted RBP6.35□□□□□ -1.39
EAR1YMR171C SMC4Q12267 1418 aa6.35□□□□□ -1.39
EAR1YMR171C PEP1P32319 1579 aa6.35□□□□□ -1.39
EAR1YMR171C YPQ2Q06328 317 aa6.34□□□□□ -1.39
EAR1YMR171C RPO31P04051 1460 aa6.34□□□□□ -1.4
EAR1YMR171C TOP2P06786 1428 aaKnown RBP6.33□□□□□ -1.4
EAR1YMR171C SUM1P46676 1062 aa6.33□□□□□ -1.4
EAR1YMR171C HST3P53687 447 aa6.33□□□□□ -1.4
EAR1YMR171C IKI3Q06706 1349 aaKnown RBP6.33□□□□□ -1.4
EAR1YMR171C GRS1P38088 690 aaKnown RBP6.33□□□□□ -1.4
EAR1YMR171C MDJ2P42834 146 aa6.33□□□□□ -1.4
EAR1YMR171C ATG1P53104 897 aa6.33□□□□□ -1.4
EAR1YMR171C YBR197CP38306 217 aa6.32□□□□□ -1.4
EAR1YMR171C STM1P39015 273 aaKnown RBP6.32□□□□□ -1.4
EAR1YMR171C CAB1Q04430 367 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-LR1P0C2J3 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-FP0CX63 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-GR2P0CX64 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-CP25384 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-DR2Q03494 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY1B-DR1Q03855 1755 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-DR3Q07791 1770 aaKnown RBP6.32□□□□□ -1.4
EAR1YMR171C TY2B-OR1Q12113 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-DR1Q12472 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY2B-OR2Q12501 1770 aa6.32□□□□□ -1.4
EAR1YMR171C TY1B-DR3Q99231 1755 aa6.32□□□□□ -1.4
EAR1YMR171C SNQ2P32568 1501 aaKnown RBP6.31□□□□□ -1.4
EAR1YMR171C RRN6P32786 894 aa6.31□□□□□ -1.4
EAR1YMR171C GLO3P38682 493 aaKnown RBP6.31□□□□□ -1.4
EAR1YMR171C AAD14P42884 376 aa6.31□□□□□ -1.4
EAR1YMR171C FOX2Q02207 900 aaKnown RBP6.31□□□□□ -1.4
EAR1YMR171C MCM1P11746 286 aa6.3□□□□□ -1.4
EAR1YMR171C BOI1P38041 980 aaKnown RBP6.3□□□□□ -1.4
EAR1YMR171C QDR1P40475 563 aa6.3□□□□□ -1.4
EAR1YMR171C YCF1P39109 1515 aaKnown RBP6.3□□□□□ -1.4
EAR1YMR171C ARG82P07250 355 aa6.3□□□□□ -1.4
EAR1YMR171C ISC10P32645 267 aa6.3□□□□□ -1.4
EAR1YMR171C HXT5P38695 592 aa6.3□□□□□ -1.4
EAR1YMR171C IPL1P38991 367 aa6.3□□□□□ -1.4
EAR1YMR171C LSO1Q3E827 93 aa6.3□□□□□ -1.4
EAR1YMR171C SPP41P38904 1435 aa6.29□□□□□ -1.4
EAR1YMR171C YHL050CP38721 697 aa6.29□□□□□ -1.4
EAR1YMR171C YHR219WP38900 624 aa6.29□□□□□ -1.4
EAR1YMR171C STH1P32597 1359 aa6.28□□□□□ -1.4
EAR1YMR171C NUP170P38181 1502 aa6.28□□□□□ -1.4
Retrieved 100 of 5,963 RNA–protein pairs in 70.1 ms