RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C DRS1P32892 752 aaKnown RBP12.61□□□□□ -0.39
EAR1YMR171C MTC1P47018 478 aaKnown RBP12.39□□□□□ -0.43
EAR1YMR171C BFR2Q06631 534 aaKnown RBP10.97□□□□□ -0.65
EAR1YMR171C DIP2Q12220 943 aaPredicted RBP10.67□□□□□ -0.7
EAR1YMR171C AVT3P36062 692 aa10.58□□□□□ -0.72
EAR1YMR171C TFA1P36100 482 aa10.42□□□□□ -0.74
EAR1YMR171C ISW2Q08773 1120 aa10.02□□□□□ -0.8
EAR1YMR171C RSE1Q04693 1361 aaKnown RBP10.02□□□□□ -0.81
EAR1YMR171C FAP1P53971 965 aa9.99□□□□□ -0.81
EAR1YMR171C RPG1P38249 964 aaKnown RBP9.91□□□□□ -0.82
EAR1YMR171C PRI1P10363 409 aa9.87□□□□□ -0.83
EAR1YMR171C AAD16Q02895 342 aa9.66□□□□□ -0.86
EAR1YMR171C RPL17AP05740 184 aaKnown RBP9.65□□□□□ -0.86
EAR1YMR171C RPL17BP46990 184 aaKnown RBP9.65□□□□□ -0.86
EAR1YMR171C REB1P21538 810 aa9.51□□□□□ -0.89
EAR1YMR171C TSR3Q12094 313 aaKnown RBP9.39□□□□□ -0.91
EAR1YMR171C PRY3P47033 881 aa9.33□□□□□ -0.92
EAR1YMR171C SPT21P35209 758 aa9.31□□□□□ -0.92
EAR1YMR171C RIM101P33400 625 aa9.21□□□□□ -0.93
EAR1YMR171C PTP3P40048 928 aa9□□□□□ -0.97
EAR1YMR171C MRPL32P25348 183 aa9□□□□□ -0.97
EAR1YMR171C YKR023WP36119 530 aaKnown RBP8.98□□□□□ -0.97
EAR1YMR171C OXP1P28273 1286 aa8.94□□□□□ -0.98
EAR1YMR171C RQC2Q12532 1038 aaKnown RBP8.94□□□□□ -0.98
EAR1YMR171C YCK3P39962 524 aa8.88□□□□□ -0.99
EAR1YMR171C SSP1P38871 571 aa8.87□□□□□ -0.99
EAR1YMR171C YAH1Q12184 172 aaKnown RBP8.83□□□□□ -1
EAR1YMR171C HOP09932 586 aa8.8□□□□□ -1
EAR1YMR171C HAA1Q12753 694 aaKnown RBP8.8□□□□□ -1
EAR1YMR171C YIL055CP40523 627 aaKnown RBP8.79□□□□□ -1
EAR1YMR171C TFC8Q12308 588 aa8.79□□□□□ -1
EAR1YMR171C CDC27P38042 758 aa8.75□□□□□ -1.01
EAR1YMR171C DCD1P06773 312 aa8.74□□□□□ -1.01
EAR1YMR171C YLR271WQ06152 274 aa8.72□□□□□ -1.01
EAR1YMR171C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.69□□□□□ -1.02not detected
EAR1YMR171C RSM7P47150 247 aa8.66□□□□□ -1.02
EAR1YMR171C DMA1P38823 416 aa8.65□□□□□ -1.02
EAR1YMR171C BCH2P36122 765 aa8.55□□□□□ -1.04
EAR1YMR171C MGA2P40578 1113 aa8.53□□□□□ -1.04
EAR1YMR171C AI2P03876 854 aa8.5□□□□□ -1.05
EAR1YMR171C PSD2P53037 1138 aaKnown RBP8.47□□□□□ -1.05
EAR1YMR171C CST9Q06032 482 aa8.47□□□□□ -1.05
EAR1YMR171C BBC1P47068 1157 aa8.43□□□□□ -1.06
EAR1YMR171C EPS1P40557 701 aa8.41□□□□□ -1.06
EAR1YMR171C SCY1P53009 804 aa8.37□□□□□ -1.07
EAR1YMR171C MAP2P38174 421 aaKnown RBP8.36□□□□□ -1.07
EAR1YMR171C UBP10P53874 792 aaPredicted RBP8.35□□□□□ -1.07
EAR1YMR171C BDF1P35817 686 aa8.34□□□□□ -1.07
EAR1YMR171C YGL015CP33199 130 aa8.33□□□□□ -1.08
EAR1YMR171C MRM1P25270 412 aa8.26□□□□□ -1.09
EAR1YMR171C SLX5P32828 619 aaKnown RBP8.2□□□□□ -1.1
EAR1YMR171C RAM2P29703 316 aa8.18□□□□□ -1.1
EAR1YMR171C RCR1P38212 213 aa8.18□□□□□ -1.1
EAR1YMR171C RTG3P38165 486 aa8.14□□□□□ -1.11
EAR1YMR171C SAS10Q12136 610 aaPredicted RBP8.14□□□□□ -1.11
EAR1YMR171C VPS29P38759 282 aa8.05□□□□□ -1.12
EAR1YMR171C MAK11P20484 414 aaKnown RBP8.03□□□□□ -1.12
EAR1YMR171C SET1P38827 1080 aaKnown RBP8.03□□□□□ -1.12
EAR1YMR171C TIF4632P39936 914 aaKnown RBP7.99□□□□□ -1.13
EAR1YMR171C YMR1P47147 688 aaKnown RBP RIP-Chip data7.97□□□□□ -1.13not detected
EAR1YMR171C STS1P38637 319 aa7.95□□□□□ -1.14
EAR1YMR171C TGL3P40308 642 aa7.93□□□□□ -1.14
EAR1YMR171C DBP1P24784 617 aaKnown RBP7.92□□□□□ -1.14
EAR1YMR171C YPR148CQ06523 435 aa7.92□□□□□ -1.14
EAR1YMR171C COQ8P27697 501 aa7.92□□□□□ -1.14
EAR1YMR171C YFR006WP43590 535 aa7.92□□□□□ -1.14
EAR1YMR171C YOR238WQ08634 303 aa7.91□□□□□ -1.14
EAR1YMR171C LEU3P08638 886 aa7.9□□□□□ -1.14
EAR1YMR171C NSR1P27476 414 aaKnown RBP RIP-Chip data7.9□□□□□ -1.14not detected
EAR1YMR171C IFH1P39520 1085 aa7.89□□□□□ -1.15
EAR1YMR171C VPS70P47161 811 aa7.89□□□□□ -1.15
EAR1YMR171C LEO1P38439 464 aa7.89□□□□□ -1.15
EAR1YMR171C MIF2P35201 549 aa7.86□□□□□ -1.15
EAR1YMR171C YAP5P40574 245 aa7.86□□□□□ -1.15
EAR1YMR171C EDS1P38073 919 aa7.86□□□□□ -1.15
EAR1YMR171C PIB1Q06651 286 aa7.85□□□□□ -1.15
EAR1YMR171C CKB1P43639 278 aa7.84□□□□□ -1.15
EAR1YMR171C NOP53Q12080 455 aaKnown RBP7.82□□□□□ -1.16
EAR1YMR171C SPB4P25808 606 aaPredicted RBP7.78□□□□□ -1.16
EAR1YMR171C PTC3P34221 468 aaKnown RBP7.77□□□□□ -1.17
EAR1YMR171C VMA1P17255 1071 aaKnown RBP7.76□□□□□ -1.17
EAR1YMR171C MST1P07236 462 aa7.73□□□□□ -1.17
EAR1YMR171C PBS2P08018 668 aa7.71□□□□□ -1.18
EAR1YMR171C DSF2P38213 736 aa7.7□□□□□ -1.18
EAR1YMR171C REF2P42073 533 aaPredicted RBP7.68□□□□□ -1.18
EAR1YMR171C RPN1P38764 993 aaKnown RBP7.67□□□□□ -1.18
EAR1YMR171C SAM3Q08986 587 aa7.67□□□□□ -1.18
EAR1YMR171C GTT3P39996 337 aa7.65□□□□□ -1.18
EAR1YMR171C ATH1P48016 1211 aa7.65□□□□□ -1.18
EAR1YMR171C GRE2Q12068 342 aaKnown RBP7.65□□□□□ -1.18
EAR1YMR171C INO80P53115 1489 aa7.65□□□□□ -1.19
EAR1YMR171C GUT1P32190 709 aa7.63□□□□□ -1.19
EAR1YMR171C TAF7Q05021 590 aa7.63□□□□□ -1.19
EAR1YMR171C MON2P48563 1636 aaPredicted RBP7.63□□□□□ -1.19
EAR1YMR171C MAM3Q12296 706 aa7.6□□□□□ -1.19
EAR1YMR171C GYP5Q12344 894 aa7.6□□□□□ -1.19
EAR1YMR171C YOL036WQ08206 761 aa7.58□□□□□ -1.2
EAR1YMR171C COX6P00427 148 aa7.57□□□□□ -1.2
EAR1YMR171C VHR2P40041 505 aa7.57□□□□□ -1.2
EAR1YMR171C IES2P40154 320 aa7.57□□□□□ -1.2
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms