RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C CTI6Q08923 506 aa12.85□□□□□ -0.35
SHM2YLR058C HPC2Q01448 625 aa12.84□□□□□ -0.35
SHM2YLR058C YNG2P38806 282 aaKnown RBP12.83□□□□□ -0.36
SHM2YLR058C FCP1Q03254 732 aa12.83□□□□□ -0.36
SHM2YLR058C SET1P38827 1080 aaKnown RBP12.82□□□□□ -0.36
SHM2YLR058C FPR3P38911 411 aaKnown RBP12.82□□□□□ -0.36
SHM2YLR058C ILV3P39522 585 aaKnown RBP12.82□□□□□ -0.36
SHM2YLR058C SPO1P53541 631 aa12.81□□□□□ -0.36
SHM2YLR058C RAT1Q02792 1006 aaKnown RBP12.81□□□□□ -0.36
SHM2YLR058C UBP12P39538 1254 aa12.8□□□□□ -0.36
SHM2YLR058C ITC1P53125 1264 aa12.79□□□□□ -0.36
SHM2YLR058C HAT1Q12341 374 aa12.79□□□□□ -0.36
SHM2YLR058C SSK22P25390 1331 aaPredicted RBP12.79□□□□□ -0.36
SHM2YLR058C PSH1Q12161 406 aa12.77□□□□□ -0.37
SHM2YLR058C GCD7P32502 381 aaPredicted RBP12.76□□□□□ -0.37
SHM2YLR058C DIB1Q06819 143 aaPredicted RBP12.75□□□□□ -0.37
SHM2YLR058C HXT10P43581 546 aa12.74□□□□□ -0.37
SHM2YLR058C BDF2Q07442 638 aa12.74□□□□□ -0.37
SHM2YLR058C HGH1P48362 394 aaKnown RBP12.72□□□□□ -0.37
SHM2YLR058C MTC5Q03897 1148 aa12.72□□□□□ -0.37
SHM2YLR058C SAC3P46674 1301 aa12.71□□□□□ -0.38
SHM2YLR058C MSN5P52918 1224 aa12.71□□□□□ -0.38
SHM2YLR058C PFF1P38244 976 aa12.7□□□□□ -0.38
SHM2YLR058C EAF6P47128 113 aa12.7□□□□□ -0.38
SHM2YLR058C SUP35P05453 685 aaKnown RBP12.69□□□□□ -0.38
SHM2YLR058C NMD2P38798 1089 aaKnown RBP12.69□□□□□ -0.38
SHM2YLR058C SYF1Q04048 859 aaPredicted RBP12.69□□□□□ -0.38
SHM2YLR058C ERT1P38140 529 aa12.68□□□□□ -0.38
SHM2YLR058C UBP16Q02863 499 aa12.68□□□□□ -0.38
SHM2YLR058C IRC3Q06683 689 aa12.68□□□□□ -0.38
SHM2YLR058C CAF20P12962 161 aaKnown RBP12.67□□□□□ -0.38
SHM2YLR058C PMD1P32634 1753 aa12.67□□□□□ -0.38
SHM2YLR058C SMY1P32364 656 aaKnown RBP12.66□□□□□ -0.38
SHM2YLR058C SSF1P38789 453 aaPredicted RBP12.66□□□□□ -0.38
SHM2YLR058C YKL222CP35995 705 aa12.65□□□□□ -0.38
SHM2YLR058C SNU66Q12420 587 aaPredicted RBP12.65□□□□□ -0.38
SHM2YLR058C SIT4P20604 311 aa12.64□□□□□ -0.39
SHM2YLR058C FRD1P32614 470 aaKnown RBP12.64□□□□□ -0.39
SHM2YLR058C CWH41P53008 833 aa12.64□□□□□ -0.39
SHM2YLR058C SLA1P32790 1244 aa12.63□□□□□ -0.39
SHM2YLR058C RPN1P38764 993 aaKnown RBP12.63□□□□□ -0.39
SHM2YLR058C NOP2P40991 618 aaKnown RBP12.63□□□□□ -0.39
SHM2YLR058C ERO1Q03103 563 aa12.63□□□□□ -0.39
SHM2YLR058C CTT1P06115 562 aa12.62□□□□□ -0.39
SHM2YLR058C NCB2Q92317 146 aa12.62□□□□□ -0.39
SHM2YLR058C DPH6Q12429 685 aa12.62□□□□□ -0.39
SHM2YLR058C NGR1P32831 672 aaKnown RBP12.61□□□□□ -0.39
SHM2YLR058C RFC1P38630 861 aaKnown RBP12.61□□□□□ -0.39
SHM2YLR058C ICP55P40051 511 aa12.61□□□□□ -0.39
SHM2YLR058C BDP1P46678 594 aa12.61□□□□□ -0.39
SHM2YLR058C KIN4Q01919 800 aa12.61□□□□□ -0.39
SHM2YLR058C SAS4Q04003 481 aa12.61□□□□□ -0.39
SHM2YLR058C GYP5Q12344 894 aa12.61□□□□□ -0.39
SHM2YLR058C ECM16Q04217 1267 aaKnown RBP12.6□□□□□ -0.39
SHM2YLR058C NKP2Q06162 153 aa12.6□□□□□ -0.39
SHM2YLR058C THI3Q07471 609 aa12.6□□□□□ -0.39
SHM2YLR058C ADR1P07248 1323 aa12.6□□□□□ -0.39
SHM2YLR058C SEC18P18759 758 aaKnown RBP12.59□□□□□ -0.39
SHM2YLR058C CDC16P09798 840 aa12.58□□□□□ -0.4
SHM2YLR058C MGM1P32266 881 aa12.58□□□□□ -0.4
SHM2YLR058C AI2P03876 854 aa12.57□□□□□ -0.4
SHM2YLR058C NOT3P06102 836 aaKnown RBP12.57□□□□□ -0.4
SHM2YLR058C YER156CP40093 338 aaKnown RBP12.57□□□□□ -0.4
SHM2YLR058C KTR3P38130 404 aaPredicted RBP12.56□□□□□ -0.4
SHM2YLR058C YGL242CP53066 181 aa12.56□□□□□ -0.4
SHM2YLR058C SRC1Q03707 834 aa12.56□□□□□ -0.4
SHM2YLR058C KRE2P27809 442 aa12.55□□□□□ -0.4
SHM2YLR058C SPL2P38839 148 aa12.55□□□□□ -0.4
SHM2YLR058C POM152P39685 1337 aa12.54□□□□□ -0.4
SHM2YLR058C PDR18P53756 1333 aa12.54□□□□□ -0.4
SHM2YLR058C ECM21P38167 1117 aaKnown RBP12.54□□□□□ -0.4
SHM2YLR058C RPT4P53549 437 aaKnown RBP12.54□□□□□ -0.4
SHM2YLR058C MLC1P53141 149 aa12.54□□□□□ -0.4
SHM2YLR058C YNL193WP53870 558 aa12.54□□□□□ -0.4
SHM2YLR058C ALO1P54783 526 aaKnown RBP12.54□□□□□ -0.4
SHM2YLR058C RPN7Q06103 429 aaKnown RBP12.54□□□□□ -0.4
SHM2YLR058C RPC31P17890 251 aa12.53□□□□□ -0.4
SHM2YLR058C GRX6Q12438 231 aa12.53□□□□□ -0.4
SHM2YLR058C RAD50P12753 1312 aa12.52□□□□□ -0.41
SHM2YLR058C RET1P22276 1149 aaKnown RBP12.52□□□□□ -0.41
SHM2YLR058C ICL1P28240 557 aaPredicted RBP12.51□□□□□ -0.41
SHM2YLR058C NUG1P40010 520 aaKnown RBP12.51□□□□□ -0.41
SHM2YLR058C RMD1Q03441 430 aa12.51□□□□□ -0.41
SHM2YLR058C DUR1,2P32528 1835 aaKnown RBP12.51□□□□□ -0.41
SHM2YLR058C RRI2Q12348 645 aa12.5□□□□□ -0.41
SHM2YLR058C YKU70P32807 602 aa12.49□□□□□ -0.41
SHM2YLR058C GLO3P38682 493 aaKnown RBP12.49□□□□□ -0.41
SHM2YLR058C HAL5P38970 855 aaKnown RBP12.49□□□□□ -0.41
SHM2YLR058C SET4P42948 560 aa12.49□□□□□ -0.41
SHM2YLR058C UBX2Q04228 584 aa12.49□□□□□ -0.41
SHM2YLR058C LCB1P25045 558 aaKnown RBP12.48□□□□□ -0.41
SHM2YLR058C IRC4Q03036 179 aa12.48□□□□□ -0.41
SHM2YLR058C FIG2P25653 1609 aa12.48□□□□□ -0.41
SHM2YLR058C MRPS35P53292 345 aa12.47□□□□□ -0.41
SHM2YLR058C BRE1Q07457 700 aaKnown RBP12.47□□□□□ -0.41
SHM2YLR058C HKR1P41809 1802 aa12.46□□□□□ -0.41
SHM2YLR058C TOP1P04786 769 aa12.46□□□□□ -0.41
SHM2YLR058C PIF1P07271 859 aa12.46□□□□□ -0.41
SHM2YLR058C EPS1P40557 701 aa12.46□□□□□ -0.41
SHM2YLR058C PIB2P53191 635 aa12.46□□□□□ -0.41
Retrieved 100 of 5,963 RNA–protein pairs in 42.1 ms