RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W TCD1P38756 429 aa3.89□□□□□ -1.79
USE1YGL098W CHZ1P40019 153 aaPredicted RBP3.89□□□□□ -1.79
USE1YGL098W DJP1P40564 432 aa3.89□□□□□ -1.79
USE1YGL098W ROG3P43602 733 aa3.89□□□□□ -1.79
USE1YGL098W NNF2P53253 936 aa3.89□□□□□ -1.79
USE1YGL098W PRP3Q03338 469 aaPredicted RBP3.89□□□□□ -1.79
USE1YGL098W MYO4P32492 1471 aa3.89□□□□□ -1.79
USE1YGL098W YPK9Q12697 1472 aa3.89□□□□□ -1.79
USE1YGL098W IRC20Q06554 1556 aa3.89□□□□□ -1.79
USE1YGL098W GLT1Q12680 2145 aaKnown RBP3.88□□□□□ -1.79
USE1YGL098W SCJ1P25303 377 aa3.88□□□□□ -1.79
USE1YGL098W LTV1P34078 463 aa3.88□□□□□ -1.79
USE1YGL098W RPN1P38764 993 aaKnown RBP3.88□□□□□ -1.79
USE1YGL098W TAN1P53072 289 aaPredicted RBP3.88□□□□□ -1.79
USE1YGL098W SYH1Q02875 849 aaKnown RBP3.88□□□□□ -1.79
USE1YGL098W POL1P13382 1468 aa3.87□□□□□ -1.79
USE1YGL098W VPS27P40343 622 aaKnown RBP3.87□□□□□ -1.79
USE1YGL098W VPS4P52917 437 aa3.87□□□□□ -1.79
USE1YGL098W RTF1P53064 558 aa3.87□□□□□ -1.79
USE1YGL098W DOS2P54858 310 aa3.87□□□□□ -1.79
USE1YGL098W UBP2Q01476 1272 aa3.87□□□□□ -1.79
USE1YGL098W LSP1Q12230 341 aaKnown RBP3.87□□□□□ -1.79
USE1YGL098W SCC2Q04002 1493 aa3.86□□□□□ -1.79
USE1YGL098W MRT4P33201 236 aaKnown RBP3.86□□□□□ -1.79
USE1YGL098W SKN7P38889 622 aa3.86□□□□□ -1.79
USE1YGL098W KXD1P53158 218 aa3.86□□□□□ -1.79
USE1YGL098W RNT1Q02555 471 aa3.86□□□□□ -1.79
USE1YGL098W VPS60Q03390 229 aa3.86□□□□□ -1.79
USE1YGL098W COG8Q04632 607 aa3.86□□□□□ -1.79
USE1YGL098W YPR053CQ6Q5F3 151 aa3.86□□□□□ -1.79
USE1YGL098W AI1P03875 834 aa3.85□□□□□ -1.79
USE1YGL098W CLB1P24868 471 aa3.85□□□□□ -1.79
USE1YGL098W MSH3P25336 1018 aa3.85□□□□□ -1.79
USE1YGL098W CLB5P30283 435 aa3.85□□□□□ -1.79
USE1YGL098W DEP1P31385 405 aa3.85□□□□□ -1.79
USE1YGL098W PSE1P32337 1089 aaKnown RBP3.85□□□□□ -1.79
USE1YGL098W NOP7P53261 605 aaKnown RBP3.85□□□□□ -1.79
USE1YGL098W NIS1P53939 407 aa3.85□□□□□ -1.79
USE1YGL098W TSC11P40061 1430 aa3.85□□□□□ -1.79
USE1YGL098W HSL1P34244 1518 aa3.85□□□□□ -1.79
USE1YGL098W RAD2P07276 1031 aa3.84□□□□□ -1.79
USE1YGL098W SRP54P20424 541 aaKnown RBP3.84□□□□□ -1.79
USE1YGL098W SWI3P32591 825 aa3.84□□□□□ -1.79
USE1YGL098W SWE1P32944 819 aa3.84□□□□□ -1.79
USE1YGL098W BYE1P36106 594 aa3.84□□□□□ -1.79
USE1YGL098W CIN4P39110 191 aa3.84□□□□□ -1.79
USE1YGL098W TEA1P47988 759 aa3.84□□□□□ -1.79
USE1YGL098W REV3P14284 1504 aa3.84□□□□□ -1.8
USE1YGL098W MLP2P40457 1679 aa3.84□□□□□ -1.8
USE1YGL098W KNS1P32350 737 aaPredicted RBP3.83□□□□□ -1.8
USE1YGL098W RPS0AP32905 252 aaKnown RBP3.83□□□□□ -1.8
USE1YGL098W KIP3P53086 805 aaKnown RBP3.83□□□□□ -1.8
USE1YGL098W ATF2P53296 535 aa3.83□□□□□ -1.8
USE1YGL098W LSC2P53312 427 aa3.83□□□□□ -1.8
USE1YGL098W HOS3Q02959 697 aaKnown RBP3.83□□□□□ -1.8
USE1YGL098W LCD1Q04377 747 aa3.83□□□□□ -1.8
USE1YGL098W ITT1Q04638 464 aa3.83□□□□□ -1.8
USE1YGL098W RLP24Q07915 199 aaKnown RBP3.83□□□□□ -1.8
USE1YGL098W ETT1Q08421 412 aaKnown RBP3.83□□□□□ -1.8
USE1YGL098W RVB2Q12464 471 aaKnown RBP3.83□□□□□ -1.8
USE1YGL098W NOP14Q99207 810 aaKnown RBP3.83□□□□□ -1.8
USE1YGL098W RAD9P14737 1309 aa3.83□□□□□ -1.8
USE1YGL098W NUP159P40477 1460 aa3.83□□□□□ -1.8
USE1YGL098W SIN3P22579 1536 aa3.83□□□□□ -1.8
USE1YGL098W BPT1P14772 1559 aa3.82□□□□□ -1.8
USE1YGL098W GEA1P47102 1408 aaPredicted RBP3.82□□□□□ -1.8
USE1YGL098W TRM3Q07527 1436 aa3.82□□□□□ -1.8
USE1YGL098W SCT1P32784 759 aa3.82□□□□□ -1.8
USE1YGL098W SIC1P38634 284 aa3.82□□□□□ -1.8
USE1YGL098W OSH7P38755 437 aa3.82□□□□□ -1.8
USE1YGL098W PDS5Q04264 1277 aa3.82□□□□□ -1.8
USE1YGL098W RPN7Q06103 429 aaKnown RBP3.82□□□□□ -1.8
USE1YGL098W YSH1Q06224 779 aaPredicted RBP3.82□□□□□ -1.8
USE1YGL098W NOP8Q08287 484 aaPredicted RBP3.82□□□□□ -1.8
USE1YGL098W SSK2P53599 1579 aa3.81□□□□□ -1.8
USE1YGL098W DNA2P38859 1522 aa3.81□□□□□ -1.8
USE1YGL098W PET111P08468 800 aa3.81□□□□□ -1.8
USE1YGL098W DLD1P32891 587 aa3.81□□□□□ -1.8
USE1YGL098W MED8P38304 223 aa3.81□□□□□ -1.8
USE1YGL098W ECM1P39715 212 aa3.81□□□□□ -1.8
USE1YGL098W YNR021WP53723 404 aaKnown RBP3.81□□□□□ -1.8
USE1YGL098W FPK1P53739 893 aa3.81□□□□□ -1.8
USE1YGL098W HIR3P47171 1648 aa3.81□□□□□ -1.8
USE1YGL098W KTR1P27810 393 aaKnown RBP3.8□□□□□ -1.8
USE1YGL098W IXR1P33417 597 aa3.8□□□□□ -1.8
USE1YGL098W YJR098CP47139 656 aa3.8□□□□□ -1.8
USE1YGL098W ITC1P53125 1264 aa3.8□□□□□ -1.8
USE1YGL098W ORC1P54784 914 aaPredicted RBP3.8□□□□□ -1.8
USE1YGL098W VPS30Q02948 557 aa3.8□□□□□ -1.8
USE1YGL098W MDM38Q08179 573 aa3.8□□□□□ -1.8
USE1YGL098W SFI1Q12369 946 aa3.8□□□□□ -1.8
USE1YGL098W SNQ2P32568 1501 aaKnown RBP3.8□□□□□ -1.8
USE1YGL098W ESS1P22696 170 aa3.79□□□□□ -1.8
USE1YGL098W YJU3P28321 313 aa3.79□□□□□ -1.8
USE1YGL098W KIP2P28743 706 aa3.79□□□□□ -1.8
USE1YGL098W ZUO1P32527 433 aaKnown RBP3.79□□□□□ -1.8
USE1YGL098W MIC60P36112 540 aa3.79□□□□□ -1.8
USE1YGL098W YMR124WP39523 943 aaKnown RBP3.79□□□□□ -1.8
USE1YGL098W IRC24P40580 263 aa3.79□□□□□ -1.8
USE1YGL098W AAD14P42884 376 aa3.79□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms