RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeastyeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMC1YFL008W YRF1-1P0CX20 1796 aa2.34□□□□□ -2.04
SMC1YFL008W YRF1-5P0CX21 1796 aa2.34□□□□□ -2.04
SMC1YFL008W YRF1-8P0CX22 1796 aa2.34□□□□□ -2.04
SMC1YFL008W TTI1P36097 1038 aa2.33□□□□□ -2.04
SMC1YFL008W EMP47P43555 445 aa2.33□□□□□ -2.04
SMC1YFL008W SPT2P06843 333 aaPredicted RBP2.33□□□□□ -2.04
SMC1YFL008W YGR035CP53222 116 aa2.33□□□□□ -2.04
SMC1YFL008W UTP13Q05946 817 aaKnown RBP2.33□□□□□ -2.04
SMC1YFL008W SPT5P27692 1063 aaKnown RBP2.33□□□□□ -2.04
SMC1YFL008W ROM1P53046 1155 aa2.33□□□□□ -2.04
SMC1YFL008W NAM8Q00539 523 aaKnown RBP2.33□□□□□ -2.04
SMC1YFL008W FBP26P32604 452 aa2.32□□□□□ -2.04
SMC1YFL008W SLX8P40072 274 aa2.32□□□□□ -2.04
SMC1YFL008W ISU1Q03020 165 aa2.32□□□□□ -2.04
SMC1YFL008W YMR196WQ04336 1088 aa2.32□□□□□ -2.04
SMC1YFL008W SPA2P23201 1466 aaKnown RBP2.32□□□□□ -2.04
SMC1YFL008W TEC1P18412 486 aa2.32□□□□□ -2.04
SMC1YFL008W UGA3P26370 528 aa2.32□□□□□ -2.04
SMC1YFL008W NAB2P32505 525 aaKnown RBP RIP-Chip data2.32□□□□□ -2.04 RIP-Chip
SMC1YFL008W HXT5P38695 592 aa2.32□□□□□ -2.04
SMC1YFL008W APP1P53933 587 aa2.32□□□□□ -2.04
SMC1YFL008W YML083CQ04526 418 aa2.32□□□□□ -2.04
SMC1YFL008W VTC4P47075 721 aa2.31□□□□□ -2.04
SMC1YFL008W CWC15Q03772 175 aaKnown RBP2.31□□□□□ -2.04
SMC1YFL008W TY1A-BLQ12266 440 aa2.31□□□□□ -2.04
SMC1YFL008W UBP1P25037 809 aa2.31□□□□□ -2.04
SMC1YFL008W ACO2P39533 789 aa2.31□□□□□ -2.04
SMC1YFL008W ALD2P47771 506 aa2.31□□□□□ -2.04
SMC1YFL008W RPO21P04050 1733 aaKnown RBP2.31□□□□□ -2.04
SMC1YFL008W SYH1Q02875 849 aaKnown RBP2.31□□□□□ -2.04
SMC1YFL008W TRK2P28584 889 aa2.3□□□□□ -2.04
SMC1YFL008W ACS2P52910 683 aaKnown RBP2.3□□□□□ -2.04
SMC1YFL008W KXD1P53158 218 aa2.3□□□□□ -2.04
SMC1YFL008W YLR346CQ06139 101 aa2.3□□□□□ -2.04
SMC1YFL008W SUB2Q07478 446 aaKnown RBP2.3□□□□□ -2.04
SMC1YFL008W DAL1P32375 460 aa2.3□□□□□ -2.04
SMC1YFL008W HDA3Q06623 655 aa2.3□□□□□ -2.04
SMC1YFL008W TRL1P09880 827 aaKnown RBP2.29□□□□□ -2.04
SMC1YFL008W MSC7P38694 644 aa2.29□□□□□ -2.04
SMC1YFL008W AAD14P42884 376 aa2.29□□□□□ -2.04
SMC1YFL008W CBC2Q08920 208 aaKnown RBP RIP-Chip data2.29□□□□□ -2.04not detected
SMC1YFL008W DNA2P38859 1522 aa2.29□□□□□ -2.04
SMC1YFL008W CAB1Q04430 367 aa2.29□□□□□ -2.04
SMC1YFL008W GLT1Q12680 2145 aaKnown RBP2.29□□□□□ -2.04
SMC1YFL008W GAL2P13181 574 aa2.29□□□□□ -2.04
SMC1YFL008W BOI1P38041 980 aaKnown RBP2.29□□□□□ -2.04
SMC1YFL008W LSB3P43603 459 aaKnown RBP2.29□□□□□ -2.04
SMC1YFL008W YJR098CP47139 656 aa2.29□□□□□ -2.04
SMC1YFL008W OPT2Q06593 877 aa2.29□□□□□ -2.04
SMC1YFL008W APC11Q12157 165 aa2.29□□□□□ -2.04
SMC1YFL008W MNL2Q12205 849 aa2.29□□□□□ -2.04
SMC1YFL008W RTG2P32608 588 aaKnown RBP2.28□□□□□ -2.04
SMC1YFL008W TGL4P36165 910 aa2.28□□□□□ -2.04
SMC1YFL008W MRX12P47084 519 aa2.28□□□□□ -2.04
SMC1YFL008W PTK2P47116 818 aaKnown RBP2.28□□□□□ -2.04
SMC1YFL008W ISR1Q06098 443 aaKnown RBP2.28□□□□□ -2.04
SMC1YFL008W REV3P14284 1504 aa2.28□□□□□ -2.04
SMC1YFL008W BNI1P41832 1953 aa2.28□□□□□ -2.04
SMC1YFL008W CDC19P00549 500 aaKnown RBP2.28□□□□□ -2.04
SMC1YFL008W RPC31P17890 251 aa2.28□□□□□ -2.04
SMC1YFL008W YBL036CP38197 257 aa2.28□□□□□ -2.05
SMC1YFL008W ATG20Q07528 640 aa2.28□□□□□ -2.05
SMC1YFL008W MYO2P19524 1574 aaKnown RBP2.27□□□□□ -2.05
SMC1YFL008W SWI5P08153 709 aa2.27□□□□□ -2.05
SMC1YFL008W KIP2P28743 706 aa2.27□□□□□ -2.05
SMC1YFL008W BRL1P38770 471 aa2.27□□□□□ -2.05
SMC1YFL008W STE20Q03497 939 aaKnown RBP2.27□□□□□ -2.05
SMC1YFL008W GUT2P32191 649 aa2.27□□□□□ -2.05
SMC1YFL008W NGR1P32831 672 aaKnown RBP2.27□□□□□ -2.05
SMC1YFL008W MSN5P52918 1224 aa2.27□□□□□ -2.05
SMC1YFL008W SOH1P38633 127 aa2.27□□□□□ -2.05
SMC1YFL008W RTT106P40161 455 aa2.27□□□□□ -2.05
SMC1YFL008W HPF1Q05164 967 aa2.27□□□□□ -2.05
SMC1YFL008W KTR7P40504 517 aa2.26□□□□□ -2.05
SMC1YFL008W PUS1Q12211 544 aaKnown RBP2.26□□□□□ -2.05
SMC1YFL008W YIR007WP40566 764 aa2.26□□□□□ -2.05
SMC1YFL008W PSH1Q12161 406 aa2.26□□□□□ -2.05
SMC1YFL008W NTE1Q04958 1679 aa2.26□□□□□ -2.05
SMC1YFL008W IRC20Q06554 1556 aa2.26□□□□□ -2.05
SMC1YFL008W CPS1P27614 576 aa2.26□□□□□ -2.05
SMC1YFL008W BOL3P39724 118 aa2.26□□□□□ -2.05
SMC1YFL008W SPR3P41901 512 aa2.26□□□□□ -2.05
SMC1YFL008W YFL066CP43538 392 aa2.26□□□□□ -2.05
SMC1YFL008W SUM1P46676 1062 aa2.26□□□□□ -2.05
SMC1YFL008W SKP1P52286 194 aa2.26□□□□□ -2.05
SMC1YFL008W SCW11P53189 542 aa2.26□□□□□ -2.05
SMC1YFL008W CTR9P89105 1077 aa2.26□□□□□ -2.05
SMC1YFL008W GPI13Q07830 1017 aa2.26□□□□□ -2.05
SMC1YFL008W TSC13Q99190 310 aa2.26□□□□□ -2.05
SMC1YFL008W COBP00163 385 aa2.25□□□□□ -2.05
SMC1YFL008W HVG1P0CE11 249 aa2.25□□□□□ -2.05
SMC1YFL008W TBF1Q02457 562 aa2.25□□□□□ -2.05
SMC1YFL008W TY1A-MR1Q04215 440 aa2.25□□□□□ -2.05
SMC1YFL008W WTM2Q12206 467 aa2.25□□□□□ -2.05
SMC1YFL008W MCM1P11746 286 aa2.25□□□□□ -2.05
SMC1YFL008W OSH7P38755 437 aa2.25□□□□□ -2.05
SMC1YFL008W NUP85P46673 744 aa2.25□□□□□ -2.05
SMC1YFL008W DFG5Q05031 458 aa2.25□□□□□ -2.05
SMC1YFL008W AIM9P40053 627 aaKnown RBP2.24□□□□□ -2.05
SMC1YFL008W JJJ2P46997 583 aa2.24□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 142.3 ms