RNA–Protein interactions for RNA: YDL084W

SUB2, Transcript of Component of the TREX complex required for nuclear mRNA export, yeast

Gene SUB2, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB2	YDL084W	NNF1	P47149	201 aa		6.66	□□□□□ -1.34
SUB2	YDL084W	YNL058C	P53947	316 aa		6.66	□□□□□ -1.34
SUB2	YDL084W	NOP14	Q99207	810 aa	Known RBP	6.66	□□□□□ -1.34
SUB2	YDL084W	SWI6	P09959	803 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	HEM3	P28789	327 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	EDS1	P38073	919 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	OPY1	P38271	328 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	GYP7	P48365	746 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	DNM1	P54861	757 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	ARR1	Q06596	294 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	PSR1	Q07800	427 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	YOL057W	Q08225	711 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	MAM3	Q12296	706 aa		6.65	□□□□□ -1.35
SUB2	YDL084W	SKI3	P17883	1432 aa	Known RBP	6.65	□□□□□ -1.35
SUB2	YDL084W	DPS1	P04802	557 aa	Known RBP	6.64	□□□□□ -1.35
SUB2	YDL084W	YEF3	P16521	1044 aa	Known RBP	6.64	□□□□□ -1.35
SUB2	YDL084W	ARC19	P33204	171 aa	Known RBP	6.64	□□□□□ -1.35
SUB2	YDL084W	JJJ1	P53863	590 aa		6.64	□□□□□ -1.35
SUB2	YDL084W	PHM6	Q05637	104 aa		6.64	□□□□□ -1.35
SUB2	YDL084W	AVO1	Q08236	1176 aa		6.64	□□□□□ -1.35
SUB2	YDL084W	APC2	Q12440	853 aa		6.64	□□□□□ -1.35
SUB2	YDL084W	TCB3	Q03640	1545 aa	Known RBP	6.64	□□□□□ -1.35
SUB2	YDL084W	MPH3	P0CE00	602 aa		6.63	□□□□□ -1.35
SUB2	YDL084W	MAK16	P10962	306 aa	Predicted RBP	6.63	□□□□□ -1.35
SUB2	YDL084W	SSB1	P11484	613 aa	Known RBP	6.63	□□□□□ -1.35
SUB2	YDL084W	IME2	P32581	645 aa		6.63	□□□□□ -1.35
SUB2	YDL084W	KDX1	P36005	433 aa		6.63	□□□□□ -1.35
SUB2	YDL084W	PPX1	P38698	397 aa		6.63	□□□□□ -1.35
SUB2	YDL084W	SSB2	P40150	613 aa	Known RBP	6.63	□□□□□ -1.35
SUB2	YDL084W	MID1	P41821	548 aa		6.63	□□□□□ -1.35
SUB2	YDL084W	ALD2	P47771	506 aa		6.63	□□□□□ -1.35
SUB2	YDL084W	CTR9	P89105	1077 aa		6.63	□□□□□ -1.35
SUB2	YDL084W	SUB2	Q07478	446 aa	Known RBP	6.63	□□□□□ -1.35
SUB2	YDL084W	RAM2	P29703	316 aa		6.62	□□□□□ -1.35
SUB2	YDL084W	PAF1	P38351	445 aa		6.62	□□□□□ -1.35
SUB2	YDL084W	CST6	P40535	587 aa		6.62	□□□□□ -1.35
SUB2	YDL084W	RNH70	P53331	553 aa		6.62	□□□□□ -1.35
SUB2	YDL084W	PUF6	Q04373	656 aa	Known RBP	6.62	□□□□□ -1.35
SUB2	YDL084W	NDL1	Q06568	189 aa		6.62	□□□□□ -1.35
SUB2	YDL084W	CLP1	Q08685	445 aa	Predicted RBP	6.62	□□□□□ -1.35
SUB2	YDL084W	CMP2	P14747	604 aa		6.61	□□□□□ -1.35
SUB2	YDL084W	UBP1	P25037	809 aa		6.61	□□□□□ -1.35
SUB2	YDL084W	GCD6	P32501	712 aa	Known RBP	6.61	□□□□□ -1.35
SUB2	YDL084W	HXT5	P38695	592 aa		6.61	□□□□□ -1.35
SUB2	YDL084W	PEX29	Q03370	554 aa		6.61	□□□□□ -1.35
SUB2	YDL084W	KAR3	P17119	729 aa		6.6	□□□□□ -1.35
SUB2	YDL084W	PHO87	P25360	923 aa		6.6	□□□□□ -1.35
SUB2	YDL084W	DPB3	P27344	201 aa		6.6	□□□□□ -1.35
SUB2	YDL084W	SPT23	P35210	1082 aa		6.6	□□□□□ -1.35
SUB2	YDL084W	TIM11	P81449	96 aa	Predicted RBP	6.6	□□□□□ -1.35
SUB2	YDL084W	NSE3	Q05541	303 aa		6.6	□□□□□ -1.35
SUB2	YDL084W	NIP100	P33420	868 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	UBP12	P39538	1254 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	YTA6	P40328	754 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	DSN1	P40568	576 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	VTI1	Q04338	217 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	RRP9	Q06506	573 aa	Known RBP	6.59	□□□□□ -1.35
SUB2	YDL084W	CDC45	Q08032	650 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	HMI1	Q12039	706 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	YRM1	Q12340	786 aa		6.59	□□□□□ -1.35
SUB2	YDL084W	AI4	P03878	556 aa		6.58	□□□□□ -1.36
SUB2	YDL084W	PHO84	P25297	587 aa	Known RBP	6.58	□□□□□ -1.36
SUB2	YDL084W	PSO2	P30620	661 aa		6.58	□□□□□ -1.36
SUB2	YDL084W	ETP1	P38748	585 aa	Known RBP	6.58	□□□□□ -1.36
SUB2	YDL084W	SOL3	P38858	249 aa		6.58	□□□□□ -1.36
SUB2	YDL084W	STM1	P39015	273 aa	Known RBP	6.58	□□□□□ -1.36
SUB2	YDL084W	CHZ1	P40019	153 aa	Predicted RBP	6.58	□□□□□ -1.36
SUB2	YDL084W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	6.58	□□□□□ -1.36	not detected
SUB2	YDL084W	TIM54	P47045	478 aa		6.58	□□□□□ -1.36
SUB2	YDL084W	HST2	P53686	357 aa		6.58	□□□□□ -1.36
SUB2	YDL084W	ITT1	Q04638	464 aa		6.58	□□□□□ -1.36
SUB2	YDL084W	BRR1	Q99177	341 aa	Predicted RBP	6.58	□□□□□ -1.36
SUB2	YDL084W	COQ8	P27697	501 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	RTG2	P32608	588 aa	Known RBP	6.57	□□□□□ -1.36
SUB2	YDL084W	PPG1	P32838	368 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	RTT106	P40161	455 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	RAD26	P40352	1085 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	OCA1	P50946	238 aa	Predicted RBP	6.57	□□□□□ -1.36
SUB2	YDL084W	BTN2	P53286	410 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	VPS30	Q02948	557 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	OYE2	Q03558	400 aa	Known RBP	6.57	□□□□□ -1.36
SUB2	YDL084W	SXM1	Q04175	944 aa	Known RBP	6.57	□□□□□ -1.36
SUB2	YDL084W	LSO1	Q3E827	93 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	TRS33	Q99394	268 aa		6.57	□□□□□ -1.36
SUB2	YDL084W	HMG1	P12683	1054 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	KEX2	P13134	814 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	RPB4	P20433	221 aa	Predicted RBP	6.56	□□□□□ -1.36
SUB2	YDL084W	SMY1	P32364	656 aa	Known RBP	6.56	□□□□□ -1.36
SUB2	YDL084W	COY1	P34237	679 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	LAM1	P38851	1228 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	RTF1	P53064	558 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	DSL1	P53847	754 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	EAF7	P53911	425 aa	Known RBP	6.56	□□□□□ -1.36
SUB2	YDL084W	TAP42	Q04372	366 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	ATG26	Q06321	1198 aa		6.56	□□□□□ -1.36
SUB2	YDL084W	MER1	P16523	270 aa		6.55	□□□□□ -1.36
SUB2	YDL084W	APN1	P22936	367 aa		6.55	□□□□□ -1.36
SUB2	YDL084W	ANP1	P32629	500 aa		6.55	□□□□□ -1.36
SUB2	YDL084W	EXO84	P38261	753 aa		6.55	□□□□□ -1.36
SUB2	YDL084W	SDS3	P40505	327 aa		6.55	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms