RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	COQ8	P27697	501 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	PRP45	P28004	379 aa	Predicted RBP	4.85	□□□□□ -1.63
PTA1	YAL043C	HAP1	P0CE41	1502 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	RAD50	P12753	1312 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	RPO41	P13433	1351 aa	Known RBP	4.84	□□□□□ -1.63
PTA1	YAL043C	RTG1	P32607	177 aa		4.84	□□□□□ -1.63
PTA1	YAL043C	YJL171C	P46992	396 aa		4.84	□□□□□ -1.63
PTA1	YAL043C	GRE2	Q12068	342 aa	Known RBP	4.84	□□□□□ -1.63
PTA1	YAL043C	HTA1	P04911	132 aa	Known RBP	4.84	□□□□□ -1.64
PTA1	YAL043C	HTA2	P04912	132 aa		4.84	□□□□□ -1.64
PTA1	YAL043C	RAD4	P14736	754 aa		4.84	□□□□□ -1.64
PTA1	YAL043C	EDS1	P38073	919 aa		4.84	□□□□□ -1.64
PTA1	YAL043C	CTR9	P89105	1077 aa		4.84	□□□□□ -1.64
PTA1	YAL043C	VPS64	Q03944	604 aa		4.84	□□□□□ -1.64
PTA1	YAL043C	ALE1	Q08548	619 aa		4.84	□□□□□ -1.64
PTA1	YAL043C	AIM44	Q99299	758 aa		4.84	□□□□□ -1.64
PTA1	YAL043C	DID4	P36108	232 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	MSB3	P48566	633 aa	Predicted RBP	4.83	□□□□□ -1.64
PTA1	YAL043C	RSC1	P53236	928 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	YNL050C	P53952	270 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	YNL035C	P53962	389 aa	Known RBP	4.83	□□□□□ -1.64
PTA1	YAL043C	VMS1	Q04311	632 aa	Known RBP	4.83	□□□□□ -1.64
PTA1	YAL043C	PTC3	P34221	468 aa	Known RBP	4.83	□□□□□ -1.64
PTA1	YAL043C	NUP133	P36161	1157 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	THI12	P42883	340 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	THI5	P43534	340 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	THI11	P47183	340 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	GCR2	Q01722	534 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	THI13	Q07748	340 aa		4.83	□□□□□ -1.64
PTA1	YAL043C	NUP145	P49687	1317 aa		4.82	□□□□□ -1.64
PTA1	YAL043C	ATH1	P48016	1211 aa		4.82	□□□□□ -1.64
PTA1	YAL043C	CWC22	P53333	577 aa	Known RBP	4.82	□□□□□ -1.64
PTA1	YAL043C	AOS1	Q06624	347 aa		4.82	□□□□□ -1.64
PTA1	YAL043C	MFT1	P33441	392 aa	Known RBP	4.82	□□□□□ -1.64
PTA1	YAL043C	APC1	P53886	1748 aa		4.81	□□□□□ -1.64
PTA1	YAL043C	APC11	Q12157	165 aa		4.81	□□□□□ -1.64
PTA1	YAL043C	NCR1	Q12200	1170 aa		4.81	□□□□□ -1.64
PTA1	YAL043C	YRF1-4	O13559	1382 aa		4.81	□□□□□ -1.64
PTA1	YAL043C	MRP7	P12687	371 aa		4.8	□□□□□ -1.64
PTA1	YAL043C	HXT10	P43581	546 aa		4.8	□□□□□ -1.64
PTA1	YAL043C	SSL2	Q00578	843 aa		4.8	□□□□□ -1.64
PTA1	YAL043C	JIP4	Q03361	876 aa		4.8	□□□□□ -1.64
PTA1	YAL043C	SIR4	P11978	1358 aa		4.8	□□□□□ -1.64
PTA1	YAL043C	USO1	P25386	1790 aa		4.8	□□□□□ -1.64
PTA1	YAL043C	PRP5	P21372	849 aa	Predicted RBP	4.79	□□□□□ -1.64
PTA1	YAL043C	GUT1	P32190	709 aa		4.79	□□□□□ -1.64
PTA1	YAL043C	SEC61	P32915	480 aa		4.79	□□□□□ -1.64
PTA1	YAL043C	COG8	Q04632	607 aa		4.79	□□□□□ -1.64
PTA1	YAL043C	CTI6	Q08923	506 aa		4.79	□□□□□ -1.64
PTA1	YAL043C	PGA3	Q12746	312 aa	Known RBP	4.79	□□□□□ -1.64
PTA1	YAL043C	MCM2	P29469	868 aa		4.79	□□□□□ -1.64
PTA1	YAL043C	APL2	P36000	726 aa	Predicted RBP	4.79	□□□□□ -1.64
PTA1	YAL043C	MAM1	P40065	302 aa		4.79	□□□□□ -1.64
PTA1	YAL043C	TFG1	P41895	735 aa	Predicted RBP	4.79	□□□□□ -1.64
PTA1	YAL043C	XKS1	P42826	600 aa		4.79	□□□□□ -1.64
PTA1	YAL043C	FPR4	Q06205	392 aa	Predicted RBP	4.79	□□□□□ -1.64
PTA1	YAL043C	ADE6	P38972	1358 aa	Known RBP	4.78	□□□□□ -1.64
PTA1	YAL043C	RVS167	P39743	482 aa	Known RBP	4.78	□□□□□ -1.64
PTA1	YAL043C	YEL023C	P39992	682 aa		4.78	□□□□□ -1.64
PTA1	YAL043C	VID28	P40547	921 aa		4.78	□□□□□ -1.64
PTA1	YAL043C	NOP53	Q12080	455 aa	Known RBP	4.78	□□□□□ -1.64
PTA1	YAL043C	BMT6	Q12291	365 aa		4.78	□□□□□ -1.64
PTA1	YAL043C	DNF3	Q12674	1656 aa		4.78	□□□□□ -1.64
PTA1	YAL043C	RPS19A	P07280	144 aa	Known RBP	4.78	□□□□□ -1.64
PTA1	YAL043C	RPS19B	P07281	144 aa	Predicted RBP	4.78	□□□□□ -1.64
PTA1	YAL043C	TRL1	P09880	827 aa	Known RBP	4.78	□□□□□ -1.64
PTA1	YAL043C	BIK1	P11709	440 aa		4.78	□□□□□ -1.64
PTA1	YAL043C	PIB2	P53191	635 aa		4.78	□□□□□ -1.64
PTA1	YAL043C	NSE3	Q05541	303 aa		4.78	□□□□□ -1.64
PTA1	YAL043C	PDR18	P53756	1333 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	PTC4	P38089	393 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	BOI2	P39969	1040 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	FCP1	Q03254	732 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	LCD1	Q04377	747 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	TRS33	Q99394	268 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	KCC4	P25389	1037 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	RKM3	P38222	552 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	SNU71	P53207	620 aa	Known RBP	4.77	□□□□□ -1.65
PTA1	YAL043C	ARP5	P53946	755 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	PKH1	Q03407	766 aa		4.77	□□□□□ -1.65
PTA1	YAL043C	SES1	P07284	462 aa	Known RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	RNR2	P09938	399 aa	Known RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	MNR2	P35724	969 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	MIC60	P36112	540 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	CIR1	P42940	261 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	DAN4	P47179	1161 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	PRP43	P53131	767 aa	Known RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	ECM16	Q04217	1267 aa	Known RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	YOL057W	Q08225	711 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	LSP1	Q12230	341 aa	Known RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	EDE1	P34216	1381 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	SET1	P38827	1080 aa	Known RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	CWH41	P53008	833 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	FRK1	Q03002	865 aa	Predicted RBP	4.76	□□□□□ -1.65
PTA1	YAL043C	HRQ1	Q05549	1077 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	RIM20	Q12033	661 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	SLM3	Q12093	417 aa		4.76	□□□□□ -1.65
PTA1	YAL043C	NOT3	P06102	836 aa	Known RBP	4.75	□□□□□ -1.65
PTA1	YAL043C	LPD1	P09624	499 aa	Known RBP	4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 32.5 ms