RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, human

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-222	ENST00000556768	SCAF11	Q99590	1463 aa	Known RBP	11.01	□□□□□ -0.65
SCFD1-222	ENST00000556768	NOS1	P29475	1434 aa		11	□□□□□ -0.65
SCFD1-222	ENST00000556768	DEPDC5	O75140	1603 aa		11	□□□□□ -0.65
SCFD1-222	ENST00000556768	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11	□□□□□ -0.65
SCFD1-222	ENST00000556768	PIP4K2B	P78356	416 aa		10.99	□□□□□ -0.65
SCFD1-222	ENST00000556768	RRBP1	Q9P2E9	1410 aa	Known RBP	10.99	□□□□□ -0.65
SCFD1-222	ENST00000556768	CPS1	P31327	1500 aa		10.99	□□□□□ -0.65
SCFD1-222	ENST00000556768	CEP152	O94986	1710 aa		10.98	□□□□□ -0.65
SCFD1-222	ENST00000556768	VWDE	Q8N2E2	1590 aa		10.98	□□□□□ -0.65
SCFD1-222	ENST00000556768	TRIM52	Q96A61	297 aa		10.98	□□□□□ -0.65
SCFD1-222	ENST00000556768	EFCAB6	Q5THR3	1501 aa		10.98	□□□□□ -0.65
SCFD1-222	ENST00000556768	DCAF8L1	A6NGE4	600 aa		10.98	□□□□□ -0.65
SCFD1-222	ENST00000556768	SLIT1	O75093	1534 aa		10.97	□□□□□ -0.65
SCFD1-222	ENST00000556768	SLC26A8	Q96RN1	970 aa		10.97	□□□□□ -0.65
SCFD1-222	ENST00000556768	ARHGAP23	Q9P227	1491 aa		10.97	□□□□□ -0.65
SCFD1-222	ENST00000556768	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.96	□□□□□ -0.65
SCFD1-222	ENST00000556768	NEURL4	Q96JN8	1562 aa		10.96	□□□□□ -0.65
SCFD1-222	ENST00000556768	KCNA6	P17658	529 aa		10.95	□□□□□ -0.66
SCFD1-222	ENST00000556768	CFAP65	Q6ZU64	1925 aa	Known RBP	10.94	□□□□□ -0.66
SCFD1-222	ENST00000556768	ZNF326	Q5BKZ1	582 aa	Known RBP	10.94	□□□□□ -0.66
SCFD1-222	ENST00000556768	PROSER2	Q86WR7	435 aa	Predicted RBP	10.93	□□□□□ -0.66
SCFD1-222	ENST00000556768	POLR1A	O95602	1720 aa	Predicted RBP	10.93	□□□□□ -0.66
SCFD1-222	ENST00000556768	SPDYE4	A6NLX3	237 aa		10.93	□□□□□ -0.66
SCFD1-222	ENST00000556768	UBR1	Q8IWV7	1749 aa		10.93	□□□□□ -0.66
SCFD1-222	ENST00000556768	ACIN1	Q9UKV3	1341 aa	Known RBP	10.92	□□□□□ -0.66
SCFD1-222	ENST00000556768	IQGAP1	P46940	1657 aa		10.92	□□□□□ -0.66
SCFD1-222	ENST00000556768	NAIP	Q13075	1403 aa		10.92	□□□□□ -0.66
SCFD1-222	ENST00000556768	TBX22	Q9Y458	520 aa		10.92	□□□□□ -0.66
SCFD1-222	ENST00000556768	PIK3C2B	O00750	1634 aa		10.92	□□□□□ -0.66
SCFD1-222	ENST00000556768	RIMS2	Q9UQ26	1411 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	HAP1	P54257	671 aa	Predicted RBP	10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	PROM2	Q8N271	834 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	TET3	O43151	1660 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	UNC13B	O14795	1591 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	SYNM	O15061	1565 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	DISP3	Q9P2K9	1392 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	PLEKHG1	Q9ULL1	1385 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	ADGRB3	O60242	1522 aa		10.91	□□□□□ -0.66
SCFD1-222	ENST00000556768	HFM1	A2PYH4	1435 aa		10.9	□□□□□ -0.66
SCFD1-222	ENST00000556768	HSPA1L	P34931	641 aa		10.9	□□□□□ -0.66
SCFD1-222	ENST00000556768	VASP	P50552	380 aa	Predicted RBP	10.9	□□□□□ -0.66
SCFD1-222	ENST00000556768	LRRC7	Q96NW7	1537 aa		10.89	□□□□□ -0.67
SCFD1-222	ENST00000556768	C14orf37	Q86TY3	774 aa		10.89	□□□□□ -0.67
SCFD1-222	ENST00000556768	KDM5A	P29375	1690 aa	Known RBP	10.89	□□□□□ -0.67
SCFD1-222	ENST00000556768	TMEM94	Q12767	1356 aa		10.88	□□□□□ -0.67
SCFD1-222	ENST00000556768	IQGAP3	Q86VI3	1631 aa		10.88	□□□□□ -0.67
SCFD1-222	ENST00000556768	ZFYVE9	O95405	1425 aa		10.88	□□□□□ -0.67
SCFD1-222	ENST00000556768	VGF	O15240	615 aa	Predicted RBP	10.87	□□□□□ -0.67
SCFD1-222	ENST00000556768	RBM33	Q96EV2	1170 aa	Known RBP	10.86	□□□□□ -0.67
SCFD1-222	ENST00000556768	MSH6	P52701	1360 aa		10.86	□□□□□ -0.67
SCFD1-222	ENST00000556768	GCC2	Q8IWJ2	1684 aa		10.85	□□□□□ -0.67
SCFD1-222	ENST00000556768	PIK3R4	Q99570	1358 aa		10.84	□□□□□ -0.67
SCFD1-222	ENST00000556768	MPHOSPH9	Q99550	1183 aa		10.84	□□□□□ -0.67
SCFD1-222	ENST00000556768	AMOTL2	Q9Y2J4	779 aa		10.84	□□□□□ -0.67
SCFD1-222	ENST00000556768	RPGRIP1L	Q68CZ1	1315 aa		10.84	□□□□□ -0.67
SCFD1-222	ENST00000556768	ATF3	P18847	181 aa		10.84	□□□□□ -0.67
SCFD1-222	ENST00000556768	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.84	□□□□□ -0.67
SCFD1-222	ENST00000556768	SLAIN2	Q9P270	581 aa		10.84	□□□□□ -0.67
SCFD1-222	ENST00000556768		E9PCH4	1651 aa		10.83	□□□□□ -0.68
SCFD1-222	ENST00000556768	TMEM131L	A2VDJ0	1609 aa		10.83	□□□□□ -0.68
SCFD1-222	ENST00000556768	MKRN4P	Q13434	485 aa	Predicted RBP	10.83	□□□□□ -0.68
SCFD1-222	ENST00000556768	CADPS2	Q86UW7	1296 aa		10.83	□□□□□ -0.68
SCFD1-222	ENST00000556768	C19orf44	Q9H6X5	657 aa		10.83	□□□□□ -0.68
SCFD1-222	ENST00000556768	NKTR	P30414	1462 aa	Known RBP	10.82	□□□□□ -0.68
SCFD1-222	ENST00000556768	NCOA3	Q9Y6Q9	1424 aa		10.81	□□□□□ -0.68
SCFD1-222	ENST00000556768	FAM135B	Q49AJ0	1406 aa		10.81	□□□□□ -0.68
SCFD1-222	ENST00000556768	RGL3	Q3MIN7	710 aa		10.8	□□□□□ -0.68
SCFD1-222	ENST00000556768	CCDC144A	A2RUR9	1427 aa		10.8	□□□□□ -0.68
SCFD1-222	ENST00000556768	ADAMTS13	Q76LX8	1427 aa		10.8	□□□□□ -0.68
SCFD1-222	ENST00000556768	SETD5	Q9C0A6	1442 aa		10.8	□□□□□ -0.68
SCFD1-222	ENST00000556768	VSIG10	Q8N0Z9	540 aa		10.79	□□□□□ -0.68
SCFD1-222	ENST00000556768	PRKCSH	P14314	528 aa	Predicted RBP	10.79	□□□□□ -0.68
SCFD1-222	ENST00000556768	TRPM2	O94759	1503 aa		10.78	□□□□□ -0.68
SCFD1-222	ENST00000556768	DIP2A	Q14689	1571 aa		10.77	□□□□□ -0.69
SCFD1-222	ENST00000556768	STRCP1	A6NGW2	1772 aa		10.76	□□□□□ -0.69
SCFD1-222	ENST00000556768	TAOK2	Q9UL54	1235 aa		10.76	□□□□□ -0.69
SCFD1-222	ENST00000556768	MET	P08581	1390 aa		10.75	□□□□□ -0.69
SCFD1-222	ENST00000556768	SPHKAP	Q2M3C7	1700 aa		10.75	□□□□□ -0.69
SCFD1-222	ENST00000556768	NWD1	Q149M9	1564 aa		10.75	□□□□□ -0.69
SCFD1-222	ENST00000556768	HRC	P23327	699 aa		10.74	□□□□□ -0.69
SCFD1-222	ENST00000556768	ILDR2	Q71H61	639 aa		10.74	□□□□□ -0.69
SCFD1-222	ENST00000556768	ANKRD30B	Q9BXX2	1392 aa		10.74	□□□□□ -0.69
SCFD1-222	ENST00000556768	RAB3GAP2	Q9H2M9	1393 aa		10.74	□□□□□ -0.69
SCFD1-222	ENST00000556768	SOCS7	O14512	581 aa		10.73	□□□□□ -0.69
SCFD1-222	ENST00000556768	ALK	Q9UM73	1620 aa		10.73	□□□□□ -0.69
SCFD1-222	ENST00000556768	PTPRU	Q92729	1446 aa		10.73	□□□□□ -0.69
SCFD1-222	ENST00000556768	SETBP1	Q9Y6X0	1596 aa		10.72	□□□□□ -0.69
SCFD1-222	ENST00000556768	CLTCL1	P53675	1640 aa		10.72	□□□□□ -0.69
SCFD1-222	ENST00000556768	MYO5B	Q9ULV0	1848 aa		10.71	□□□□□ -0.7
SCFD1-222	ENST00000556768	NEXMIF	Q5QGS0	1516 aa		10.71	□□□□□ -0.7
SCFD1-222	ENST00000556768	STK26	Q9P289	416 aa		10.7	□□□□□ -0.7
SCFD1-222	ENST00000556768	ADGRF5	Q8IZF2	1346 aa		10.7	□□□□□ -0.7
SCFD1-222	ENST00000556768	JCAD	Q9P266	1359 aa		10.7	□□□□□ -0.7
SCFD1-222	ENST00000556768	DCC	P43146	1447 aa		10.7	□□□□□ -0.7
SCFD1-222	ENST00000556768	BRINP3	Q76B58	766 aa		10.7	□□□□□ -0.7
SCFD1-222	ENST00000556768	CHD2	O14647	1828 aa	Known RBP	10.69	□□□□□ -0.7
SCFD1-222	ENST00000556768	MEX3C	Q5U5Q3	659 aa	Known RBP	10.68	□□□□□ -0.7
SCFD1-222	ENST00000556768	LRRC59	Q96AG4	307 aa	Known RBP	10.68	□□□□□ -0.7
SCFD1-222	ENST00000556768	STAC3	Q96MF2	364 aa		10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 239 ms