RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SAMD9Q5K651 1589 aa6.49□□□□□ -1.37
CD44-226ENST00000527889 MAGI1Q96QZ7 1491 aaPredicted RBP6.49□□□□□ -1.37
CD44-226ENST00000527889 POTEMA6NI47 508 aa6.49□□□□□ -1.37
CD44-226ENST00000527889 SPDYE16A6NNV3 312 aaPredicted RBP6.49□□□□□ -1.37
CD44-226ENST00000527889 DPYSL4O14531 572 aa6.49□□□□□ -1.37
CD44-226ENST00000527889 EMP3P54852 163 aa6.49□□□□□ -1.37
CD44-226ENST00000527889 PDIA6Q15084 440 aa6.49□□□□□ -1.37
CD44-226ENST00000527889 POTEGQ6S5H5 508 aa6.49□□□□□ -1.37
CD44-226ENST00000527889 CEP170Q5SW79 1584 aa6.48□□□□□ -1.37
CD44-226ENST00000527889 ARHGAP35Q9NRY4 1499 aa6.48□□□□□ -1.37
CD44-226ENST00000527889 FAM117AQ9C073 453 aa6.48□□□□□ -1.37
CD44-226ENST00000527889 GRIN2AQ12879 1464 aa6.47□□□□□ -1.37
CD44-226ENST00000527889 CFAP43Q8NDM7 1665 aa6.47□□□□□ -1.37
CD44-226ENST00000527889 PCF11O94913 1555 aaKnown RBP6.47□□□□□ -1.37
CD44-226ENST00000527889 EFCAB5A4FU69 1503 aa6.46□□□□□ -1.37
CD44-226ENST00000527889 FAM205CA6NFA0 338 aa6.46□□□□□ -1.38
CD44-226ENST00000527889 VPS8Q8N3P4 1428 aa6.46□□□□□ -1.38
CD44-226ENST00000527889 LHX6Q9UPM6 363 aa6.46□□□□□ -1.38
CD44-226ENST00000527889 PLEKHG3A1L390 1219 aa6.45□□□□□ -1.38
CD44-226ENST00000527889 ZNF316A6NFI3 1004 aaPredicted RBP6.45□□□□□ -1.38
CD44-226ENST00000527889 EVI5O60447 810 aa6.45□□□□□ -1.38
CD44-226ENST00000527889 PPARGC1BQ86YN6 1023 aaKnown RBP6.45□□□□□ -1.38
CD44-226ENST00000527889 CERKQ8TCT0 537 aa6.45□□□□□ -1.38
CD44-226ENST00000527889 HS3ST6Q96QI5 342 aa6.45□□□□□ -1.38
CD44-226ENST00000527889 C1orf115Q9H7X2 142 aa6.45□□□□□ -1.38
CD44-226ENST00000527889 MINK1Q8N4C8 1332 aaPredicted RBP6.45□□□□□ -1.38
CD44-226ENST00000527889 TBC1D12O60347 775 aa6.44□□□□□ -1.38
CD44-226ENST00000527889 MAP3K9P80192 1104 aa6.44□□□□□ -1.38
CD44-226ENST00000527889 KIAA0556O60303 1618 aa6.43□□□□□ -1.38
CD44-226ENST00000527889 FHOD3Q2V2M9 1422 aa6.43□□□□□ -1.38
CD44-226ENST00000527889 TRIM26Q12899 539 aaPredicted RBP6.43□□□□□ -1.38
CD44-226ENST00000527889 VARS2Q5ST30 1063 aaKnown RBP6.43□□□□□ -1.38
CD44-226ENST00000527889 ANO8Q9HCE9 1232 aaPredicted RBP6.43□□□□□ -1.38
CD44-226ENST00000527889 ERBB3P21860 1342 aa6.43□□□□□ -1.38
CD44-226ENST00000527889 UGGT2Q9NYU1 1516 aa6.42□□□□□ -1.38
CD44-226ENST00000527889 MAP2K5Q13163 448 aa6.42□□□□□ -1.38
CD44-226ENST00000527889 AMHR2Q16671 573 aa6.42□□□□□ -1.38
CD44-226ENST00000527889 IFFO2Q5TF58 517 aa6.42□□□□□ -1.38
CD44-226ENST00000527889 CCDC102AQ96A19 550 aa6.42□□□□□ -1.38
CD44-226ENST00000527889 DDRGK1Q96HY6 314 aa6.42□□□□□ -1.38
CD44-226ENST00000527889 IRF6O14896 467 aa6.41□□□□□ -1.38
CD44-226ENST00000527889 PARP9Q8IXQ6 854 aa6.41□□□□□ -1.38
CD44-226ENST00000527889 CHMP7Q8WUX9 453 aaPredicted RBP6.41□□□□□ -1.38
CD44-226ENST00000527889 ARID3AQ99856 593 aa6.41□□□□□ -1.38
CD44-226ENST00000527889 NUP160Q12769 1436 aa6.41□□□□□ -1.38
CD44-226ENST00000527889 KIAA0586Q9BVV6 1533 aa6.4□□□□□ -1.38
CD44-226ENST00000527889 TIAM1Q13009 1591 aa6.4□□□□□ -1.38
CD44-226ENST00000527889 SHROOM2Q13796 1616 aa6.4□□□□□ -1.38
CD44-226ENST00000527889 HRCP23327 699 aa6.4□□□□□ -1.38
CD44-226ENST00000527889 FOSBP53539 338 aa6.4□□□□□ -1.38
CD44-226ENST00000527889 RAPGEF6Q8TEU7 1601 aa6.39□□□□□ -1.39
CD44-226ENST00000527889 NUTM2FA1L443 756 aa6.39□□□□□ -1.39
CD44-226ENST00000527889 FLIIQ13045 1269 aa6.39□□□□□ -1.39
CD44-226ENST00000527889 POTEEQ6S8J3 1075 aa6.39□□□□□ -1.39
CD44-226ENST00000527889 DISP1Q96F81 1524 aa6.39□□□□□ -1.39
CD44-226ENST00000527889 HECW1Q76N89 1606 aa6.39□□□□□ -1.39
CD44-226ENST00000527889 KIF13AQ9H1H9 1805 aa6.39□□□□□ -1.39
CD44-226ENST00000527889 ARID3CA6NKF2 412 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 ONECUT3O60422 494 aaPredicted RBP6.38□□□□□ -1.39
CD44-226ENST00000527889 CDAN1Q8IWY9 1227 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 DDX12PQ92771 950 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 PCGF6Q9BYE7 350 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 KRTAP3-3Q9BYR6 98 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 KRTAP3-2Q9BYR7 98 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 PCDHGA10Q9Y5H3 936 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 FYCO1Q9BQS8 1478 aa6.38□□□□□ -1.39
CD44-226ENST00000527889 KDM6BO15054 1643 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 CLASP1Q7Z460 1538 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 GRXCR2A6NFK2 248 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 APBB1O00213 710 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 GNPATO15228 680 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 OSBPP22059 807 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 PRIM1P49642 420 aaKnown RBP6.37□□□□□ -1.39
CD44-226ENST00000527889 ZNF454Q8N9F8 522 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 JPH4Q96JJ6 628 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 GOPCQ9HD26 462 aa6.37□□□□□ -1.39
CD44-226ENST00000527889 SUPT6HQ7KZ85 1726 aaKnown RBP6.36□□□□□ -1.39
CD44-226ENST00000527889 CASKIN1Q8WXD9 1431 aa6.36□□□□□ -1.39
CD44-226ENST00000527889 FECHP22830 423 aa6.36□□□□□ -1.39
CD44-226ENST00000527889 PTGER2P43116 358 aa6.36□□□□□ -1.39
CD44-226ENST00000527889 ZNF687Q8N1G0 1237 aa6.36□□□□□ -1.39
CD44-226ENST00000527889 ADAM33Q9BZ11 813 aa6.36□□□□□ -1.39
CD44-226ENST00000527889 FMN1Q68DA7 1419 aa6.35□□□□□ -1.39
CD44-226ENST00000527889 HIC1Q14526 733 aa6.35□□□□□ -1.39
CD44-226ENST00000527889 AXIN2Q9Y2T1 843 aa6.35□□□□□ -1.39
CD44-226ENST00000527889 MAP3K1Q13233 1512 aa6.35□□□□□ -1.39
CD44-226ENST00000527889 PSDA5PKW4 1024 aaPredicted RBP6.34□□□□□ -1.39
CD44-226ENST00000527889 FCHSD2O94868 740 aa6.34□□□□□ -1.39
CD44-226ENST00000527889 PHF14O94880 888 aa6.34□□□□□ -1.39
CD44-226ENST00000527889 PPP4R3BQ5MIZ7 849 aa6.34□□□□□ -1.39
CD44-226ENST00000527889 ATP1B4Q9UN42 357 aaPredicted RBP6.34□□□□□ -1.39
CD44-226ENST00000527889 CDK13Q14004 1512 aaKnown RBP6.34□□□□□ -1.39
CD44-226ENST00000527889 A6NJR5 290 aa6.33□□□□□ -1.4
CD44-226ENST00000527889 ZDHHC16Q969W1 377 aa6.33□□□□□ -1.4
CD44-226ENST00000527889 LRRC9Q6ZRR7 1453 aa6.33□□□□□ -1.4
CD44-226ENST00000527889 ABCA8O94911 1581 aa6.32□□□□□ -1.4
CD44-226ENST00000527889 MAGI3Q5TCQ9 1506 aa6.32□□□□□ -1.4
CD44-226ENST00000527889 PSEN2P49810 448 aa6.32□□□□□ -1.4
CD44-226ENST00000527889 TTLL12Q14166 644 aaPredicted RBP6.32□□□□□ -1.4
CD44-226ENST00000527889 KANK4Q5T7N3 995 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms