RNA–Protein interactions for RNA: ENST00000519914.5

SDC2-204, Transcript of syndecan 2, humanhuman

TSL 2 BASIC

Gene SDC2, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-204ENST00000519914 IRX2Q9BZI1 471 aaPredicted RBP7.73□□□□□ -1.17
SDC2-204ENST00000519914 TSR3Q9UJK0 312 aaKnown RBP7.73□□□□□ -1.17
SDC2-204ENST00000519914 RGS20O76081 388 aa7.71□□□□□ -1.18
SDC2-204ENST00000519914 ITGBL1O95965 494 aaPredicted RBP7.71□□□□□ -1.18
SDC2-204ENST00000519914 UBTFP17480 764 aaKnown RBP7.71□□□□□ -1.18
SDC2-204ENST00000519914 PRSS12P56730 875 aa7.71□□□□□ -1.18
SDC2-204ENST00000519914 PPP4CP60510 307 aa7.71□□□□□ -1.18
SDC2-204ENST00000519914 KCNC4Q03721 635 aa7.71□□□□□ -1.18
SDC2-204ENST00000519914 FAM198AQ9UFP1 575 aa7.71□□□□□ -1.18
SDC2-204ENST00000519914 KIF27Q86VH2 1401 aa7.71□□□□□ -1.18
SDC2-204ENST00000519914 C3orf80F5H4A9 247 aa7.7□□□□□ -1.18
SDC2-204ENST00000519914 NYAP1Q6ZVC0 841 aa7.7□□□□□ -1.18
SDC2-204ENST00000519914 SAMD7Q7Z3H4 446 aa7.7□□□□□ -1.18
SDC2-204ENST00000519914 CDHR5Q9HBB8 845 aa7.7□□□□□ -1.18
SDC2-204ENST00000519914 PNMA3Q9UL41 463 aa7.7□□□□□ -1.18
SDC2-204ENST00000519914 CADPSQ9ULU8 1353 aa7.69□□□□□ -1.18
SDC2-204ENST00000519914 TATDN2Q93075 761 aa7.68□□□□□ -1.18
SDC2-204ENST00000519914 RNF40O75150 1001 aa7.67□□□□□ -1.18
SDC2-204ENST00000519914 OSBPP22059 807 aa7.67□□□□□ -1.18
SDC2-204ENST00000519914 ARAP1Q96P48 1450 aa7.67□□□□□ -1.18
SDC2-204ENST00000519914 CC2D2AQ9P2K1 1620 aa7.66□□□□□ -1.18
SDC2-204ENST00000519914 NUDT18Q6ZVK8 323 aa7.66□□□□□ -1.18
SDC2-204ENST00000519914 CERKQ8TCT0 537 aa7.66□□□□□ -1.18
SDC2-204ENST00000519914 ARIH1Q9Y4X5 557 aaPredicted RBP7.65□□□□□ -1.18
SDC2-204ENST00000519914 MAP3K1Q13233 1512 aa7.64□□□□□ -1.19
SDC2-204ENST00000519914 NBPF26B4DH59 902 aa7.64□□□□□ -1.19
SDC2-204ENST00000519914 HDGFP51858 240 aaKnown RBP7.63□□□□□ -1.19
SDC2-204ENST00000519914 TSHZ2Q9NRE2 1034 aa7.63□□□□□ -1.19
SDC2-204ENST00000519914 DNMBPQ6XZF7 1577 aa7.63□□□□□ -1.19
SDC2-204ENST00000519914 PADI6Q6TGC4 694 aa7.61□□□□□ -1.19
SDC2-204ENST00000519914 CCER1Q8TC90 406 aaPredicted RBP7.61□□□□□ -1.19
SDC2-204ENST00000519914 IGF1RP08069 1367 aa7.61□□□□□ -1.19
SDC2-204ENST00000519914 FGD5Q6ZNL6 1462 aa7.61□□□□□ -1.19
SDC2-204ENST00000519914 ARHGAP35Q9NRY4 1499 aa7.61□□□□□ -1.19
SDC2-204ENST00000519914 ABCA10Q8WWZ4 1543 aa7.6□□□□□ -1.19
SDC2-204ENST00000519914 CUX2O14529 1486 aa7.6□□□□□ -1.19
SDC2-204ENST00000519914 RRBP1Q9P2E9 1410 aaKnown RBP7.6□□□□□ -1.19
SDC2-204ENST00000519914 TJAP1Q5JTD0 557 aa7.6□□□□□ -1.19
SDC2-204ENST00000519914 MTRQ99707 1265 aa7.6□□□□□ -1.19
SDC2-204ENST00000519914 NPDC1Q9NQX5 325 aaPredicted RBP7.6□□□□□ -1.19
SDC2-204ENST00000519914 WDR97A6NE52 1622 aa7.6□□□□□ -1.19
SDC2-204ENST00000519914 LAMC3Q9Y6N6 1575 aa7.6□□□□□ -1.19
SDC2-204ENST00000519914 FANCD2Q9BXW9 1451 aa7.59□□□□□ -1.19
SDC2-204ENST00000519914 MLLT3P42568 568 aaPredicted RBP7.59□□□□□ -1.19
SDC2-204ENST00000519914 Q6ZNB5 142 aa7.59□□□□□ -1.19
SDC2-204ENST00000519914 CLSPNQ9HAW4 1339 aa7.58□□□□□ -1.2
SDC2-204ENST00000519914 SWT1Q5T5J6 900 aaKnown RBP7.58□□□□□ -1.2
SDC2-204ENST00000519914 ZNF516Q92618 1163 aa7.58□□□□□ -1.2
SDC2-204ENST00000519914 CUL7Q14999 1698 aa7.58□□□□□ -1.2
SDC2-204ENST00000519914 APLP1P51693 650 aa7.57□□□□□ -1.2
SDC2-204ENST00000519914 IL21Q9HBE4 155 aa7.57□□□□□ -1.2
SDC2-204ENST00000519914 TOPBP1Q92547 1522 aa7.56□□□□□ -1.2
SDC2-204ENST00000519914 CFAP43Q8NDM7 1665 aa7.56□□□□□ -1.2
SDC2-204ENST00000519914 CARMIL1Q5VZK9 1371 aa7.56□□□□□ -1.2
SDC2-204ENST00000519914 EFCAB5A4FU69 1503 aa7.55□□□□□ -1.2
SDC2-204ENST00000519914 COPS2P61201 443 aa7.55□□□□□ -1.2
SDC2-204ENST00000519914 PPP1R18Q6NYC8 613 aa7.55□□□□□ -1.2
SDC2-204ENST00000519914 NKX2-3Q8TAU0 364 aa7.55□□□□□ -1.2
SDC2-204ENST00000519914 PRKD2Q9BZL6 878 aa7.55□□□□□ -1.2
SDC2-204ENST00000519914 RBM27Q9P2N5 1060 aaKnown RBP7.55□□□□□ -1.2
SDC2-204ENST00000519914 TIAM1Q13009 1591 aa7.55□□□□□ -1.2
SDC2-204ENST00000519914 POLA1P09884 1462 aaPredicted RBP7.54□□□□□ -1.2
SDC2-204ENST00000519914 GFRA3O60609 400 aa7.54□□□□□ -1.2
SDC2-204ENST00000519914 TTC13Q8NBP0 860 aa7.54□□□□□ -1.2
SDC2-204ENST00000519914 KCNV2Q8TDN2 545 aa7.54□□□□□ -1.2
SDC2-204ENST00000519914 ARHGEF1Q92888 912 aaKnown RBP7.54□□□□□ -1.2
SDC2-204ENST00000519914 CTTNBP2Q8WZ74 1663 aa7.54□□□□□ -1.2
SDC2-204ENST00000519914 AQRO60306 1485 aaKnown RBP eCLIP7.54□□□□□ -1.23e-6■■■■■ 30
SDC2-204ENST00000519914 ABCA5Q8WWZ7 1642 aa7.53□□□□□ -1.2
SDC2-204ENST00000519914 FHAD1B1AJZ9 1412 aa7.52□□□□□ -1.2
SDC2-204ENST00000519914 SLF2Q8IX21 1173 aa7.52□□□□□ -1.2
SDC2-204ENST00000519914 EYA1Q99502 592 aa7.52□□□□□ -1.2
SDC2-204ENST00000519914 NUTM2FA1L443 756 aa7.52□□□□□ -1.21
SDC2-204ENST00000519914 FAM161AQ3B820 660 aa7.52□□□□□ -1.21
SDC2-204ENST00000519914 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.52□□□□□ -1.21
SDC2-204ENST00000519914 SLC4A3P48751 1232 aa7.51□□□□□ -1.21
SDC2-204ENST00000519914 URB2Q14146 1524 aaKnown RBP7.5□□□□□ -1.21
SDC2-204ENST00000519914 DHX57Q6P158 1386 aaKnown RBP7.5□□□□□ -1.21
SDC2-204ENST00000519914 CCNB3Q8WWL7 1395 aa7.5□□□□□ -1.21
SDC2-204ENST00000519914 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.5□□□□□ -1.21
SDC2-204ENST00000519914 LRRC9Q6ZRR7 1453 aa7.49□□□□□ -1.21
SDC2-204ENST00000519914 FYCO1Q9BQS8 1478 aa7.49□□□□□ -1.21
SDC2-204ENST00000519914 PTGDRQ13258 359 aa7.49□□□□□ -1.21
SDC2-204ENST00000519914 KANK4Q5T7N3 995 aaPredicted RBP7.49□□□□□ -1.21
SDC2-204ENST00000519914 NECTIN2Q92692 538 aa7.49□□□□□ -1.21
SDC2-204ENST00000519914 SAMD9Q5K651 1589 aa7.49□□□□□ -1.21
SDC2-204ENST00000519914 KIF21AQ7Z4S6 1674 aa7.49□□□□□ -1.21
SDC2-204ENST00000519914 PCF11O94913 1555 aaKnown RBP7.48□□□□□ -1.21
SDC2-204ENST00000519914 THOC2Q8NI27 1593 aaKnown RBP7.48□□□□□ -1.21
SDC2-204ENST00000519914 RAD54L2Q9Y4B4 1467 aa7.48□□□□□ -1.21
SDC2-204ENST00000519914 NESP48681 1621 aa7.47□□□□□ -1.21
SDC2-204ENST00000519914 CASKIN1Q8WXD9 1431 aa7.47□□□□□ -1.21
SDC2-204ENST00000519914 PDS5BQ9NTI5 1447 aa7.47□□□□□ -1.21
SDC2-204ENST00000519914 LAPTM4AQ15012 233 aa7.47□□□□□ -1.21
SDC2-204ENST00000519914 DIEXFQ68CQ4 756 aaKnown RBP7.47□□□□□ -1.21
SDC2-204ENST00000519914 RBM46Q8TBY0 533 aaKnown RBP7.47□□□□□ -1.21
SDC2-204ENST00000519914 PCDHB3Q9Y5E6 796 aa7.47□□□□□ -1.21
SDC2-204ENST00000519914 TARBP1Q13395 1621 aaKnown RBP7.46□□□□□ -1.22
SDC2-204ENST00000519914 SEMA3EO15041 775 aa7.46□□□□□ -1.22
SDC2-204ENST00000519914 ZPR1O75312 459 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms