RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 AKAP17AQ02040 695 aaKnown RBP16.19■□□□□ 0.18
PTPRF-215ENST00000496447 TNNT3P45378 269 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-215ENST00000496447 APAF1O14727 1248 aa16.19■□□□□ 0.18
PTPRF-215ENST00000496447 NOC3LQ8WTT2 800 aaKnown RBP16.19■□□□□ 0.18
PTPRF-215ENST00000496447 VPS37DQ86XT2 251 aa16.19■□□□□ 0.18
PTPRF-215ENST00000496447 RAD21O60216 631 aa16.18■□□□□ 0.18
PTPRF-215ENST00000496447 DIAPH3Q9NSV4 1193 aa16.18■□□□□ 0.18
PTPRF-215ENST00000496447 NLRP2Q9NX02 1062 aa16.18■□□□□ 0.18
PTPRF-215ENST00000496447 FBXW7Q969H0 707 aa16.17■□□□□ 0.18
PTPRF-215ENST00000496447 H3BQV1 296 aa16.17■□□□□ 0.18
PTPRF-215ENST00000496447 IFFO2Q5TF58 517 aa16.17■□□□□ 0.18
PTPRF-215ENST00000496447 SYNE3Q6ZMZ3 975 aa16.17■□□□□ 0.18
PTPRF-215ENST00000496447 PRKRIP1Q9H875 184 aaPredicted RBP16.17■□□□□ 0.18
PTPRF-215ENST00000496447 KLHL34Q8N239 644 aa16.17■□□□□ 0.18
PTPRF-215ENST00000496447 CHMP4CQ96CF2 233 aa16.17■□□□□ 0.18
PTPRF-215ENST00000496447 STAC3Q96MF2 364 aa16.16■□□□□ 0.18
PTPRF-215ENST00000496447 CTDP1Q9Y5B0 961 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-215ENST00000496447 NUTM2GQ5VZR2 741 aa16.16■□□□□ 0.18
PTPRF-215ENST00000496447 FAM184AQ8NB25 1140 aa16.16■□□□□ 0.18
PTPRF-215ENST00000496447 MIA2Q96PC5 1412 aa16.16■□□□□ 0.18
PTPRF-215ENST00000496447 FKBP5Q13451 457 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-215ENST00000496447 CUX1P39880 1505 aa16.15■□□□□ 0.18
PTPRF-215ENST00000496447 PHF23Q9BUL5 403 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-215ENST00000496447 IFIT2P09913 472 aaKnown RBP16.15■□□□□ 0.18
PTPRF-215ENST00000496447 API5Q9BZZ5 524 aaKnown RBP16.15■□□□□ 0.18
PTPRF-215ENST00000496447 ANO8Q9HCE9 1232 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-215ENST00000496447 FOXD4L5Q5VV16 416 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-215ENST00000496447 FOXD4L4Q8WXT5 416 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-215ENST00000496447 ARHGAP5Q13017 1502 aa16.14■□□□□ 0.17
PTPRF-215ENST00000496447 PLIN1O60240 522 aa16.14■□□□□ 0.17
PTPRF-215ENST00000496447 TSPYL4Q9UJ04 414 aa16.14■□□□□ 0.17
PTPRF-215ENST00000496447 COG6Q9Y2V7 657 aa16.14■□□□□ 0.17
PTPRF-215ENST00000496447 CENPQQ7L2Z9 268 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-215ENST00000496447 FGD6Q6ZV73 1430 aa16.13■□□□□ 0.17
PTPRF-215ENST00000496447 RUFY2Q8WXA3 655 aa16.13■□□□□ 0.17
PTPRF-215ENST00000496447 CABP2Q9NPB3 220 aa16.13■□□□□ 0.17
PTPRF-215ENST00000496447 APPP05067 770 aa16.13■□□□□ 0.17
PTPRF-215ENST00000496447 NLRP6P59044 892 aa16.13■□□□□ 0.17
PTPRF-215ENST00000496447 PDE4CQ08493 712 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 HMOX1P09601 288 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 G3BP1Q13283 466 aaKnown RBP eCLIP16.12■□□□□ 0.174e-7■□□□□ 8.1
PTPRF-215ENST00000496447 PRM3Q9NNZ6 103 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 GRIN2BQ13224 1484 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 TMEM132EQ6IEE7 984 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 AFAP1Q8N556 730 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 ARID3AQ99856 593 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 DDX19BQ9UMR2 479 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 ANKRD50Q9ULJ7 1429 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 TCEAL9Q9UHQ7 104 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 GGNBP2Q9H3C7 697 aa16.12■□□□□ 0.17
PTPRF-215ENST00000496447 GPRASP1Q5JY77 1395 aa16.11■□□□□ 0.17
PTPRF-215ENST00000496447 CPLX2Q6PUV4 134 aaKnown RBP16.11■□□□□ 0.17
PTPRF-215ENST00000496447 TXNDC2Q86VQ3 553 aa16.11■□□□□ 0.17
PTPRF-215ENST00000496447 RUNDC1Q96C34 613 aa16.11■□□□□ 0.17
PTPRF-215ENST00000496447 RBM33Q96EV2 1170 aaKnown RBP16.11■□□□□ 0.17
PTPRF-215ENST00000496447 ROCK1Q13464 1354 aa16.11■□□□□ 0.17
PTPRF-215ENST00000496447 GNAI1P63096 354 aa16.1■□□□□ 0.17
PTPRF-215ENST00000496447 CEP89Q96ST8 783 aa16.1■□□□□ 0.17
PTPRF-215ENST00000496447 PROSER2Q86WR7 435 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-215ENST00000496447 PHF14O94880 888 aa16.1■□□□□ 0.17
PTPRF-215ENST00000496447 NCAPD3P42695 1498 aa16.1■□□□□ 0.17
PTPRF-215ENST00000496447 PRG4Q92954 1404 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-215ENST00000496447 RRP1P56182 461 aaKnown RBP16.09■□□□□ 0.17
PTPRF-215ENST00000496447 ESCO1Q5FWF5 840 aa16.09■□□□□ 0.17
PTPRF-215ENST00000496447 DHX16O60231 1041 aaKnown RBP16.09■□□□□ 0.17
PTPRF-215ENST00000496447 PES1O00541 588 aaKnown RBP16.09■□□□□ 0.17
PTPRF-215ENST00000496447 ZKSCAN1P17029 563 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-215ENST00000496447 RIC3Q7Z5B4 369 aa16.09■□□□□ 0.17
PTPRF-215ENST00000496447 CRBNQ96SW2 442 aa16.09■□□□□ 0.17
PTPRF-215ENST00000496447 SYNJ2O15056 1496 aa16.09■□□□□ 0.17
PTPRF-215ENST00000496447 TPD52L1Q16890 204 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-215ENST00000496447 DZIP1LQ8IYY4 767 aaKnown RBP16.09■□□□□ 0.17
PTPRF-215ENST00000496447 AIMP1Q12904 312 aaKnown RBP16.07■□□□□ 0.16
PTPRF-215ENST00000496447 MCTP1Q6DN14 999 aa16.07■□□□□ 0.16
PTPRF-215ENST00000496447 ABTB2Q8N961 1025 aa16.07■□□□□ 0.16
PTPRF-215ENST00000496447 TRIM29Q14134 588 aa16.07■□□□□ 0.16
PTPRF-215ENST00000496447 ATP6V1DQ9Y5K8 247 aa16.07■□□□□ 0.16
PTPRF-215ENST00000496447 TRDNQ13061 729 aa16.06■□□□□ 0.16
PTPRF-215ENST00000496447 EXOC6Q8TAG9 804 aa16.06■□□□□ 0.16
PTPRF-215ENST00000496447 PODXL2Q9NZ53 605 aa16.06■□□□□ 0.16
PTPRF-215ENST00000496447 TPM3P06753 285 aa16.06■□□□□ 0.16
PTPRF-215ENST00000496447 ANO2Q9NQ90 1003 aa16.06■□□□□ 0.16
PTPRF-215ENST00000496447 ZBED9Q6R2W3 1325 aa16.06■□□□□ 0.16
PTPRF-215ENST00000496447 REC8O95072 547 aa16.06■□□□□ 0.16
PTPRF-215ENST00000496447 FYCO1Q9BQS8 1478 aa16.05■□□□□ 0.16
PTPRF-215ENST00000496447 CPLX1O14810 134 aa16.05■□□□□ 0.16
PTPRF-215ENST00000496447 FAM161AQ3B820 660 aa16.05■□□□□ 0.16
PTPRF-215ENST00000496447 HSP90AB4PQ58FF6 505 aa16.05■□□□□ 0.16
PTPRF-215ENST00000496447 CWC22Q9HCG8 908 aaKnown RBP16.04■□□□□ 0.16
PTPRF-215ENST00000496447 RRBP1Q9P2E9 1410 aaKnown RBP16.04■□□□□ 0.16
PTPRF-215ENST00000496447 NCOA2Q15596 1464 aa16.04■□□□□ 0.16
PTPRF-215ENST00000496447 THEMISQ8N1K5 641 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-215ENST00000496447 RNF20Q5VTR2 975 aa16.03■□□□□ 0.16
PTPRF-215ENST00000496447 CASKIN1Q8WXD9 1431 aa16.03■□□□□ 0.16
PTPRF-215ENST00000496447 FOXD4L6Q3SYB3 417 aaPredicted RBP16.02■□□□□ 0.16
PTPRF-215ENST00000496447 FOXD4L3Q6VB84 417 aaPredicted RBP16.02■□□□□ 0.16
PTPRF-215ENST00000496447 ERICH2A1L162 156 aa16.02■□□□□ 0.16
PTPRF-215ENST00000496447 NFXL1Q6ZNB6 911 aa16.02■□□□□ 0.16
PTPRF-215ENST00000496447 NEUROD6Q96NK8 337 aa16.02■□□□□ 0.16
PTPRF-215ENST00000496447 A0A0U1RQG5 324 aaPredicted RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms