RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	ERVK-7	P63135	1459 aa		13.41	□□□□□ -0.26
RFX3-209	ENST00000451859	NEURL4	Q96JN8	1562 aa		13.41	□□□□□ -0.26
RFX3-209	ENST00000451859	UBR1	Q8IWV7	1749 aa		13.4	□□□□□ -0.26
RFX3-209	ENST00000451859	NLRP1	Q9C000	1473 aa		13.39	□□□□□ -0.27
RFX3-209	ENST00000451859	ADGRL2	O95490	1459 aa		13.38	□□□□□ -0.27
RFX3-209	ENST00000451859	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
RFX3-209	ENST00000451859	PKD2	Q13563	968 aa		13.38	□□□□□ -0.27
RFX3-209	ENST00000451859	LHX8	Q68G74	356 aa		13.38	□□□□□ -0.27
RFX3-209	ENST00000451859	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.38	□□□□□ -0.27
RFX3-209	ENST00000451859	KANK1	Q14678	1352 aa		13.37	□□□□□ -0.27
RFX3-209	ENST00000451859	IQGAP1	P46940	1657 aa		13.37	□□□□□ -0.27
RFX3-209	ENST00000451859	PIK3C2B	O00750	1634 aa		13.36	□□□□□ -0.27
RFX3-209	ENST00000451859	MYO5B	Q9ULV0	1848 aa		13.36	□□□□□ -0.27
RFX3-209	ENST00000451859	ITGAE	P38570	1179 aa		13.35	□□□□□ -0.27
RFX3-209	ENST00000451859	VWDE	Q8N2E2	1590 aa		13.34	□□□□□ -0.27
RFX3-209	ENST00000451859	EFCAB6	Q5THR3	1501 aa		13.34	□□□□□ -0.27
RFX3-209	ENST00000451859	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.33	□□□□□ -0.28
RFX3-209	ENST00000451859	GCC2	Q8IWJ2	1684 aa		13.33	□□□□□ -0.28
RFX3-209	ENST00000451859	ARHGAP31	Q2M1Z3	1444 aa		13.32	□□□□□ -0.28
RFX3-209	ENST00000451859	ANKRD50	Q9ULJ7	1429 aa		13.32	□□□□□ -0.28
RFX3-209	ENST00000451859	TET3	O43151	1660 aa		13.32	□□□□□ -0.28
RFX3-209	ENST00000451859	ANKLE2	Q86XL3	938 aa		13.32	□□□□□ -0.28
RFX3-209	ENST00000451859	STRCP1	A6NGW2	1772 aa		13.32	□□□□□ -0.28
RFX3-209	ENST00000451859	UNC13B	O14795	1591 aa		13.32	□□□□□ -0.28
RFX3-209	ENST00000451859	SYNM	O15061	1565 aa		13.32	□□□□□ -0.28
RFX3-209	ENST00000451859	NPHP4	O75161	1426 aa	Predicted RBP	13.31	□□□□□ -0.28
RFX3-209	ENST00000451859	LMTK2	Q8IWU2	1503 aa		13.31	□□□□□ -0.28
RFX3-209	ENST00000451859	IQSEC2	Q5JU85	1478 aa		13.29	□□□□□ -0.28
RFX3-209	ENST00000451859		E9PCH4	1651 aa		13.28	□□□□□ -0.28
RFX3-209	ENST00000451859	KDM5A	P29375	1690 aa	Known RBP	13.28	□□□□□ -0.28
RFX3-209	ENST00000451859	PRR29	P0C7W0	189 aa		13.27	□□□□□ -0.29
RFX3-209	ENST00000451859	STAG3	Q9UJ98	1225 aa		13.27	□□□□□ -0.29
RFX3-209	ENST00000451859	MED14	O60244	1454 aa		13.27	□□□□□ -0.29
RFX3-209	ENST00000451859	SCAF11	Q99590	1463 aa	Known RBP	13.27	□□□□□ -0.29
RFX3-209	ENST00000451859	IQGAP3	Q86VI3	1631 aa		13.27	□□□□□ -0.29
RFX3-209	ENST00000451859	ADGRB3	O60242	1522 aa		13.26	□□□□□ -0.29
RFX3-209	ENST00000451859	CPS1	P31327	1500 aa		13.26	□□□□□ -0.29
RFX3-209	ENST00000451859	SLIT1	O75093	1534 aa		13.25	□□□□□ -0.29
RFX3-209	ENST00000451859	UBAP1L	F5GYI3	381 aa		13.25	□□□□□ -0.29
RFX3-209	ENST00000451859	POTEI	P0CG38	1075 aa		13.25	□□□□□ -0.29
RFX3-209	ENST00000451859	ROCK1	Q13464	1354 aa		13.24	□□□□□ -0.29
RFX3-209	ENST00000451859	ARHGAP23	Q9P227	1491 aa		13.23	□□□□□ -0.29
RFX3-209	ENST00000451859	NOS1	P29475	1434 aa		13.23	□□□□□ -0.29
RFX3-209	ENST00000451859	IDI1	Q13907	227 aa		13.23	□□□□□ -0.29
RFX3-209	ENST00000451859	TXNDC2	Q86VQ3	553 aa		13.23	□□□□□ -0.29
RFX3-209	ENST00000451859	RPRD2	Q5VT52	1461 aa	Known RBP	13.23	□□□□□ -0.29
RFX3-209	ENST00000451859	XIRP1	Q702N8	1843 aa	Known RBP	13.23	□□□□□ -0.29
RFX3-209	ENST00000451859	LTK	P29376	864 aa		13.22	□□□□□ -0.29
RFX3-209	ENST00000451859	SPHKAP	Q2M3C7	1700 aa		13.22	□□□□□ -0.29
RFX3-209	ENST00000451859	EID1	Q9Y6B2	187 aa		13.21	□□□□□ -0.29
RFX3-209	ENST00000451859	TMEM131L	A2VDJ0	1609 aa		13.21	□□□□□ -0.3
RFX3-209	ENST00000451859	TMEM2	Q9UHN6	1383 aa		13.2	□□□□□ -0.3
RFX3-209	ENST00000451859	RRBP1	Q9P2E9	1410 aa	Known RBP	13.2	□□□□□ -0.3
RFX3-209	ENST00000451859	NUP155	O75694	1391 aa		13.2	□□□□□ -0.3
RFX3-209	ENST00000451859	PIP4K2B	P78356	416 aa		13.19	□□□□□ -0.3
RFX3-209	ENST00000451859	CHGA	P10645	457 aa	Known RBP	13.18	□□□□□ -0.3
RFX3-209	ENST00000451859	CD44	P16070	742 aa	Known RBP	13.17	□□□□□ -0.3
RFX3-209	ENST00000451859	BCAN	Q96GW7	911 aa		13.17	□□□□□ -0.3
RFX3-209	ENST00000451859	LRRC7	Q96NW7	1537 aa		13.17	□□□□□ -0.3
RFX3-209	ENST00000451859	SLC52A1	Q9NWF4	448 aa		13.16	□□□□□ -0.3
RFX3-209	ENST00000451859	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.15	□□□□□ -0.3
RFX3-209	ENST00000451859	ALK	Q9UM73	1620 aa		13.14	□□□□□ -0.31
RFX3-209	ENST00000451859	KIF1B	O60333	1816 aa		13.14	□□□□□ -0.31
RFX3-209	ENST00000451859	SLC26A8	Q96RN1	970 aa		13.14	□□□□□ -0.31
RFX3-209	ENST00000451859	NAIP	Q13075	1403 aa		13.13	□□□□□ -0.31
RFX3-209	ENST00000451859	RIMS2	Q9UQ26	1411 aa		13.13	□□□□□ -0.31
RFX3-209	ENST00000451859	CHD2	O14647	1828 aa	Known RBP	13.13	□□□□□ -0.31
RFX3-209	ENST00000451859	DISP3	Q9P2K9	1392 aa		13.13	□□□□□ -0.31
RFX3-209	ENST00000451859	TOM1	O60784	492 aa		13.13	□□□□□ -0.31
RFX3-209	ENST00000451859	PPP1R15A	O75807	674 aa	Predicted RBP	13.13	□□□□□ -0.31
RFX3-209	ENST00000451859	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.13	□□□□□ -0.31
RFX3-209	ENST00000451859	CLTCL1	P53675	1640 aa		13.12	□□□□□ -0.31
RFX3-209	ENST00000451859	ZFYVE9	O95405	1425 aa		13.12	□□□□□ -0.31
RFX3-209	ENST00000451859	NWD1	Q149M9	1564 aa		13.11	□□□□□ -0.31
RFX3-209	ENST00000451859	HSPA1L	P34931	641 aa		13.09	□□□□□ -0.31
RFX3-209	ENST00000451859	TRIM52	Q96A61	297 aa		13.09	□□□□□ -0.31
RFX3-209	ENST00000451859	RBM33	Q96EV2	1170 aa	Known RBP	13.09	□□□□□ -0.31
RFX3-209	ENST00000451859	PLEKHG1	Q9ULL1	1385 aa		13.08	□□□□□ -0.31
RFX3-209	ENST00000451859	HFM1	A2PYH4	1435 aa		13.07	□□□□□ -0.32
RFX3-209	ENST00000451859	TRPM2	O94759	1503 aa		13.07	□□□□□ -0.32
RFX3-209	ENST00000451859	TMEM94	Q12767	1356 aa		13.07	□□□□□ -0.32
RFX3-209	ENST00000451859	KCNA6	P17658	529 aa		13.06	□□□□□ -0.32
RFX3-209	ENST00000451859	HDGF	P51858	240 aa	Known RBP	13.06	□□□□□ -0.32
RFX3-209	ENST00000451859	NKTR	P30414	1462 aa	Known RBP	13.05	□□□□□ -0.32
RFX3-209	ENST00000451859	ZNF326	Q5BKZ1	582 aa	Known RBP	13.05	□□□□□ -0.32
RFX3-209	ENST00000451859	PROSER2	Q86WR7	435 aa	Predicted RBP	13.05	□□□□□ -0.32
RFX3-209	ENST00000451859	DIP2A	Q14689	1571 aa		13.05	□□□□□ -0.32
RFX3-209	ENST00000451859	NRXN3	Q9Y4C0	1643 aa		13.05	□□□□□ -0.32
RFX3-209	ENST00000451859	CLCN6	P51797	869 aa		13.04	□□□□□ -0.32
RFX3-209	ENST00000451859	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.04	□□□□□ -0.32
RFX3-209	ENST00000451859	ROBO1	Q9Y6N7	1651 aa		13.04	□□□□□ -0.32
RFX3-209	ENST00000451859	MED1	Q15648	1581 aa	Predicted RBP	13.03	□□□□□ -0.32
RFX3-209	ENST00000451859	ADAMTS13	Q76LX8	1427 aa		13.03	□□□□□ -0.32
RFX3-209	ENST00000451859	NEXMIF	Q5QGS0	1516 aa		13.02	□□□□□ -0.33
RFX3-209	ENST00000451859	PPL	O60437	1756 aa		13.01	□□□□□ -0.33
RFX3-209	ENST00000451859	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13	□□□□□ -0.33
RFX3-209	ENST00000451859	ILDR2	Q71H61	639 aa		13	□□□□□ -0.33
RFX3-209	ENST00000451859	C14orf37	Q86TY3	774 aa		13	□□□□□ -0.33
RFX3-209	ENST00000451859	PHLPP1	O60346	1717 aa		12.99	□□□□□ -0.33
RFX3-209	ENST00000451859	XRN1	Q8IZH2	1706 aa	Known RBP	12.99	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 75 ms