RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PKD2Q13563 968 aa14.33□□□□□ -0.11
UPF3B-201ENST00000276201 NEURL4Q96JN8 1562 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 ADGRB3O60242 1522 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 SLC52A1Q9NWF4 448 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 DMRT2Q9Y5R5 561 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 SPHKAPQ2M3C7 1700 aa14.32□□□□□ -0.12
UPF3B-201ENST00000276201 ARHGAP23Q9P227 1491 aa14.32□□□□□ -0.12
UPF3B-201ENST00000276201 SLIT1O75093 1534 aa14.31□□□□□ -0.12
UPF3B-201ENST00000276201 SIN3AQ96ST3 1273 aa14.31□□□□□ -0.12
UPF3B-201ENST00000276201 SLC4A1APQ9BWU0 796 aaKnown RBP14.31□□□□□ -0.12
UPF3B-201ENST00000276201 ANKLE2Q86XL3 938 aa14.3□□□□□ -0.12
UPF3B-201ENST00000276201 STAG3Q9UJ98 1225 aa14.3□□□□□ -0.12
UPF3B-201ENST00000276201 TMEM131LA2VDJ0 1609 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 TMEM2Q9UHN6 1383 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 TRPM2O94759 1503 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 MYO5BQ9ULV0 1848 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 MED14O60244 1454 aa14.28□□□□□ -0.12
UPF3B-201ENST00000276201 SCAF11Q99590 1463 aaKnown RBP14.28□□□□□ -0.12
UPF3B-201ENST00000276201 BCANQ96GW7 911 aa14.27□□□□□ -0.12
UPF3B-201ENST00000276201 CLTCL1P53675 1640 aa14.27□□□□□ -0.12
UPF3B-201ENST00000276201 NPHP4O75161 1426 aaPredicted RBP14.27□□□□□ -0.13
UPF3B-201ENST00000276201 LTKP29376 864 aa14.26□□□□□ -0.13
UPF3B-201ENST00000276201 MPHOSPH9Q99550 1183 aa14.26□□□□□ -0.13
UPF3B-201ENST00000276201 FOXD1Q16676 465 aa14.26□□□□□ -0.13
UPF3B-201ENST00000276201 IQGAP1P46940 1657 aa14.25□□□□□ -0.13
UPF3B-201ENST00000276201 TXNDC2Q86VQ3 553 aa14.25□□□□□ -0.13
UPF3B-201ENST00000276201 TONSLQ96HA7 1378 aa14.25□□□□□ -0.13
UPF3B-201ENST00000276201 CHGAP10645 457 aaKnown RBP14.24□□□□□ -0.13
UPF3B-201ENST00000276201 ZFYVE9O95405 1425 aa14.24□□□□□ -0.13
UPF3B-201ENST00000276201 EID1Q9Y6B2 187 aa14.23□□□□□ -0.13
UPF3B-201ENST00000276201 RIMS2Q9UQ26 1411 aa14.23□□□□□ -0.13
UPF3B-201ENST00000276201 LTBP4Q8N2S1 1624 aa14.22□□□□□ -0.13
UPF3B-201ENST00000276201 ZNF335Q9H4Z2 1342 aaPredicted RBP14.22□□□□□ -0.13
UPF3B-201ENST00000276201 KIF1BO60333 1816 aa14.19□□□□□ -0.14
UPF3B-201ENST00000276201 MSH5O43196 834 aa14.18□□□□□ -0.14
UPF3B-201ENST00000276201 CERKQ8TCT0 537 aa14.17□□□□□ -0.14
UPF3B-201ENST00000276201 CCDC144AA2RUR9 1427 aa14.17□□□□□ -0.14
UPF3B-201ENST00000276201 PLEKHG1Q9ULL1 1385 aa14.17□□□□□ -0.14
UPF3B-201ENST00000276201 NUTM2DQ5VT03 806 aaPredicted RBP14.17□□□□□ -0.14
UPF3B-201ENST00000276201 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.16□□□□□ -0.14
UPF3B-201ENST00000276201 NEXMIFQ5QGS0 1516 aa14.16□□□□□ -0.14
UPF3B-201ENST00000276201 HDGFP51858 240 aaKnown RBP14.15□□□□□ -0.14
UPF3B-201ENST00000276201 ZNF326Q5BKZ1 582 aaKnown RBP14.15□□□□□ -0.14
UPF3B-201ENST00000276201 SENP3Q9H4L4 574 aaPredicted RBP14.15□□□□□ -0.14
UPF3B-201ENST00000276201 STRCP1A6NGW2 1772 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 SPATA31E1Q6ZUB1 1445 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 SLC26A8Q96RN1 970 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 PPP4R2Q9NY27 417 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 ANKRD30BQ9BXX2 1392 aa14.13□□□□□ -0.15
UPF3B-201ENST00000276201 CPS1P31327 1500 aa14.12□□□□□ -0.15
UPF3B-201ENST00000276201 ADAMTS13Q76LX8 1427 aa14.12□□□□□ -0.15
UPF3B-201ENST00000276201 NRXN3Q9Y4C0 1643 aa14.11□□□□□ -0.15
UPF3B-201ENST00000276201 PPLO60437 1756 aa14.11□□□□□ -0.15
UPF3B-201ENST00000276201 IQSEC2Q5JU85 1478 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 DIP2AQ14689 1571 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 SETBP1Q9Y6X0 1596 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 RPGRIP1LQ68CZ1 1315 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 NWD1Q149M9 1564 aa14.08□□□□□ -0.15
UPF3B-201ENST00000276201 HNRNPUQ00839 825 aaKnown RBP eCLIP14.08□□□□□ -0.16
UPF3B-201ENST00000276201 TBX22Q9Y458 520 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 IFT172Q9UG01 1749 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 RGL3Q3MIN7 710 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 LRRC7Q96NW7 1537 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 WASHC2AQ641Q2 1341 aa14.07□□□□□ -0.16
UPF3B-201ENST00000276201 FBXO41Q8TF61 875 aa14.07□□□□□ -0.16
UPF3B-201ENST00000276201 KCNA6P17658 529 aa14.07□□□□□ -0.16
UPF3B-201ENST00000276201 HIRIP3Q9BW71 556 aaPredicted RBP14.07□□□□□ -0.16
UPF3B-201ENST00000276201 ZBED9Q6R2W3 1325 aa14.06□□□□□ -0.16
UPF3B-201ENST00000276201 CHD2O14647 1828 aaKnown RBP14.06□□□□□ -0.16
UPF3B-201ENST00000276201 VGFO15240 615 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-201ENST00000276201 ILDR1Q86SU0 546 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-201ENST00000276201 NKTRP30414 1462 aaKnown RBP14.04□□□□□ -0.16
UPF3B-201ENST00000276201 HSPA5P11021 654 aaKnown RBP14.04□□□□□ -0.16
UPF3B-201ENST00000276201 PIK3R4Q99570 1358 aa14.04□□□□□ -0.16
UPF3B-201ENST00000276201 ADGRF5Q8IZF2 1346 aa14.04□□□□□ -0.16
UPF3B-201ENST00000276201 PTPRUQ92729 1446 aa14.04□□□□□ -0.16
UPF3B-201ENST00000276201 SETD1AO15047 1707 aaKnown RBP14.03□□□□□ -0.16
UPF3B-201ENST00000276201 XIRP1Q702N8 1843 aaKnown RBP14.03□□□□□ -0.16
UPF3B-201ENST00000276201 ERICH6Q7L0X2 663 aa14.03□□□□□ -0.16
UPF3B-201ENST00000276201 METP08581 1390 aa14.03□□□□□ -0.16
UPF3B-201ENST00000276201 EIF4G2P78344 907 aaKnown RBP eCLIP14.03□□□□□ -0.162e-9■■■■■ 39.4
UPF3B-201ENST00000276201 CCDC7Q96M83 1385 aa14.02□□□□□ -0.16
UPF3B-201ENST00000276201 ALKQ9UM73 1620 aa14.02□□□□□ -0.16
UPF3B-201ENST00000276201 XRN1Q8IZH2 1706 aaKnown RBP14.01□□□□□ -0.17
UPF3B-201ENST00000276201 MYOM2P54296 1465 aa14.01□□□□□ -0.17
UPF3B-201ENST00000276201 TMEM94Q12767 1356 aa14□□□□□ -0.17
UPF3B-201ENST00000276201 NRXN1Q9ULB1 1477 aa14□□□□□ -0.17
UPF3B-201ENST00000276201 PIK3C2GO75747 1445 aa14□□□□□ -0.17
UPF3B-201ENST00000276201 PROSER2Q86WR7 435 aaPredicted RBP14□□□□□ -0.17
UPF3B-201ENST00000276201 RBM33Q96EV2 1170 aaKnown RBP13.99□□□□□ -0.17
UPF3B-201ENST00000276201 PRKRIP1Q9H875 184 aaPredicted RBP13.99□□□□□ -0.17
UPF3B-201ENST00000276201 SMG6Q86US8 1419 aaKnown RBP13.99□□□□□ -0.17
UPF3B-201ENST00000276201 UBAP1LF5GYI3 381 aa13.98□□□□□ -0.17
UPF3B-201ENST00000276201 AMOTL2Q9Y2J4 779 aa13.98□□□□□ -0.17
UPF3B-201ENST00000276201 RNF123Q5XPI4 1314 aa13.98□□□□□ -0.17
UPF3B-201ENST00000276201 ASXL1Q8IXJ9 1541 aa13.96□□□□□ -0.17
UPF3B-201ENST00000276201 DCAF11Q8TEB1 546 aa13.95□□□□□ -0.18
UPF3B-201ENST00000276201 PRAG1Q86YV5 1406 aa13.94□□□□□ -0.18
UPF3B-201ENST00000276201 TOM1O60784 492 aa13.94□□□□□ -0.18
UPF3B-201ENST00000276201 KDM2AQ9Y2K7 1162 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms