RNA–Protein interactions for RNA: YHR172W

SPC97, Transcript of Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex, yeast

Gene SPC97, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPC97	YHR172W	HST4	P53688	370 aa		4.62	□□□□□ -1.67
SPC97	YHR172W	SMX3	P54999	86 aa	Predicted RBP	4.62	□□□□□ -1.67
SPC97	YHR172W	YMR206W	Q03695	313 aa		4.62	□□□□□ -1.67
SPC97	YHR172W	TSA2	Q04120	196 aa		4.62	□□□□□ -1.67
SPC97	YHR172W	THI20	Q08224	551 aa		4.62	□□□□□ -1.67
SPC97	YHR172W	SLM3	Q12093	417 aa		4.62	□□□□□ -1.67
SPC97	YHR172W	SPA2	P23201	1466 aa	Known RBP	4.61	□□□□□ -1.67
SPC97	YHR172W	AHC2	P25649	128 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	YCR090C	P25654	182 aa	Known RBP	4.61	□□□□□ -1.67
SPC97	YHR172W	YMC1	P32331	307 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	AEP1	P32493	518 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	YGP1	P38616	354 aa	Known RBP	4.61	□□□□□ -1.67
SPC97	YHR172W	YMR320W	Q04897	101 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	SHH4	Q06236	168 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	YOL073C	Q08232	322 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	RPL16A	P26784	199 aa	Known RBP	4.61	□□□□□ -1.67
SPC97	YHR172W	MRP49	P32388	137 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	ERG24	P32462	438 aa	Known RBP	4.61	□□□□□ -1.67
SPC97	YHR172W	MRPL39	P36533	70 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	CTL1	Q03220	320 aa	Known RBP	4.61	□□□□□ -1.67
SPC97	YHR172W	YDR124W	Q04608	324 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	ZEO1	Q08245	113 aa		4.61	□□□□□ -1.67
SPC97	YHR172W	SEC4	P07560	215 aa	Known RBP	4.6	□□□□□ -1.67
SPC97	YHR172W	SNF4	P12904	322 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	ATG22	P25568	528 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	COQ2	P32378	372 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	LHP1	P33399	275 aa	Known RBP	4.6	□□□□□ -1.67
SPC97	YHR172W	AVT5	P38176	459 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	BIR1	P47134	954 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	PET191	Q02772	108 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	TRM12	Q04235	462 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	HPF1	Q05164	967 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	RRG7	Q08774	242 aa	Predicted RBP	4.6	□□□□□ -1.67
SPC97	YHR172W	FRE8	Q12209	686 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	RPL25	P04456	142 aa	Known RBP	4.6	□□□□□ -1.67
SPC97	YHR172W	PAN6	P40459	309 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	ILM1	P47155	203 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	LSM7	P53905	115 aa	Known RBP	4.6	□□□□□ -1.67
SPC97	YHR172W	IRC15	Q02733	499 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	GPI17	Q04080	534 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	LOA1	Q06508	300 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	PSF1	Q12488	208 aa		4.6	□□□□□ -1.67
SPC97	YHR172W	UBI4	P0CG63	381 aa	Known RBP	4.59	□□□□□ -1.67
SPC97	YHR172W	ERG4	P25340	473 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	TRS65	P32893	560 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	ARN2	P38724	620 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	PET8	P38921	284 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	YEA4	P40004	342 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	SUR7	P54003	302 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	ACT1	P60010	375 aa	Known RBP	4.59	□□□□□ -1.67
SPC97	YHR172W	YMR253C	Q04835	414 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	CNL1	Q06333	122 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	YLR122C	Q12312	125 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	GEP5	Q12393	293 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	YCR024C-B	Q3E7Z8	88 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	YKL068W-A	Q3E826	78 aa		4.59	□□□□□ -1.67
SPC97	YHR172W	RPC19	P28000	142 aa	Known RBP	4.58	□□□□□ -1.68
SPC97	YHR172W	PRY2	P36110	329 aa		4.58	□□□□□ -1.68
SPC97	YHR172W	UFD1	P53044	361 aa		4.58	□□□□□ -1.68
SPC97	YHR172W	IRC10	Q08118	586 aa		4.58	□□□□□ -1.68
SPC97	YHR172W	PCL9	Q12477	304 aa		4.58	□□□□□ -1.68
SPC97	YHR172W	RPL2A	P0CX45	254 aa	Known RBP	4.58	□□□□□ -1.68
SPC97	YHR172W	RPL2B	P0CX46	254 aa	Known RBP	4.58	□□□□□ -1.68
SPC97	YHR172W	ERD2	P18414	219 aa		4.58	□□□□□ -1.68
SPC97	YHR172W	PMU1	P36069	295 aa		4.58	□□□□□ -1.68
SPC97	YHR172W	PEX17	P40155	199 aa		4.58	□□□□□ -1.68
SPC97	YHR172W	PET9	P18239	318 aa	Known RBP	4.57	□□□□□ -1.68
SPC97	YHR172W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
SPC97	YHR172W	RPS20	P38701	121 aa	Known RBP	4.57	□□□□□ -1.68
SPC97	YHR172W	RIO2	P40160	425 aa	Known RBP	4.57	□□□□□ -1.68
SPC97	YHR172W	XBP1	P40489	647 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	APQ12	P40532	138 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	PAC10	P48363	199 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	SOL1	P50278	321 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	YGL101W	P53144	215 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	YPL113C	Q02961	396 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	YPL229W	Q99395	206 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	IPP1	P00817	287 aa	Known RBP	4.57	□□□□□ -1.68
SPC97	YHR172W	CDC7	P06243	507 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	SFC1	P33303	322 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	PAN3	P36102	679 aa	Predicted RBP	4.57	□□□□□ -1.68
SPC97	YHR172W	GWT1	P47026	490 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	YGL034C	P53186	121 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	YGR035C	P53222	116 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	NRM1	P53718	249 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	HHT1	P61830	136 aa		4.57	□□□□□ -1.68
SPC97	YHR172W	DDI2	P0CH63	225 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	DDI3	P0CH64	225 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	RPL23A	P0CX41	137 aa	Known RBP	4.56	□□□□□ -1.68
SPC97	YHR172W	RPL23B	P0CX42	137 aa	Known RBP	4.56	□□□□□ -1.68
SPC97	YHR172W	HCM1	P25364	564 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	RSA4	P25382	515 aa	Known RBP	4.56	□□□□□ -1.68
SPC97	YHR172W	PHA2	P32452	334 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	COS8	P38723	381 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	MNN5	P46982	586 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	SDT1	P53078	280 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	YNL046W	P53956	172 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	CRZ1	P53968	678 aa		4.56	□□□□□ -1.68
SPC97	YHR172W	COF1	Q03048	143 aa	Known RBP	4.56	□□□□□ -1.68
SPC97	YHR172W	SDC1	Q03323	175 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 59.3 ms