RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeastyeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RKR1YMR247C REP1P03871 373 aa0.71□□□□□ -2.3
RKR1YMR247C CPT1P17898 393 aa0.71□□□□□ -2.3
RKR1YMR247C CKI1P20485 582 aa0.71□□□□□ -2.3
RKR1YMR247C DAL82P21705 255 aa0.71□□□□□ -2.3
RKR1YMR247C ZRT1P32804 376 aa0.71□□□□□ -2.3
RKR1YMR247C RPT5P33297 434 aaKnown RBP0.71□□□□□ -2.3
RKR1YMR247C TPO5P36029 618 aa0.71□□□□□ -2.3
RKR1YMR247C YKL070WP36087 169 aa0.71□□□□□ -2.3
RKR1YMR247C SWC5P38326 303 aa0.71□□□□□ -2.3
RKR1YMR247C PRM9P39551 298 aa0.71□□□□□ -2.3
RKR1YMR247C YHB1P39676 399 aaKnown RBP0.71□□□□□ -2.3
RKR1YMR247C THO1P40040 218 aaKnown RBP0.71□□□□□ -2.3
RKR1YMR247C FMC1P40491 155 aa0.71□□□□□ -2.3
RKR1YMR247C EFM4P40516 257 aa0.71□□□□□ -2.3
RKR1YMR247C PFS2P42841 465 aaKnown RBP0.71□□□□□ -2.3
RKR1YMR247C STB1P42845 420 aa0.71□□□□□ -2.3
RKR1YMR247C ERG25P53045 309 aa0.71□□□□□ -2.3
RKR1YMR247C MRPL50P53724 139 aa0.71□□□□□ -2.3
RKR1YMR247C OCA2P53949 197 aa0.71□□□□□ -2.3
RKR1YMR247C CGI121Q03705 181 aaKnown RBP0.71□□□□□ -2.3
RKR1YMR247C YLR283WQ05867 314 aa0.71□□□□□ -2.3
RKR1YMR247C SNT309Q06091 175 aaPredicted RBP0.71□□□□□ -2.3
RKR1YMR247C PER33Q12144 273 aa0.71□□□□□ -2.3
RKR1YMR247C AIM45Q12480 344 aaKnown RBP0.71□□□□□ -2.3
RKR1YMR247C RAD9P14737 1309 aa0.71□□□□□ -2.3
RKR1YMR247C RAS2P01120 322 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C SSA3P09435 649 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C MXR2P25566 168 aa0.7□□□□□ -2.3
RKR1YMR247C SWD2P36104 329 aaPredicted RBP0.7□□□□□ -2.3
RKR1YMR247C STP2P38704 541 aa0.7□□□□□ -2.3
RKR1YMR247C ARN2P38724 620 aa0.7□□□□□ -2.3
RKR1YMR247C BAT1P38891 393 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C SHQ1P40486 507 aaPredicted RBP0.7□□□□□ -2.3
RKR1YMR247C SGN1P40561 250 aaKnown RBP RIP-Chip data0.7□□□□□ -2.3not detected
RKR1YMR247C LCB2P40970 561 aa0.7□□□□□ -2.3
RKR1YMR247C SYS1P41544 203 aa0.7□□□□□ -2.3
RKR1YMR247C NIF3P53081 288 aa0.7□□□□□ -2.3
RKR1YMR247C YNR066CP53752 436 aa0.7□□□□□ -2.3
RKR1YMR247C COS1P53822 381 aa0.7□□□□□ -2.3
RKR1YMR247C MRX11Q03079 207 aa0.7□□□□□ -2.3
RKR1YMR247C RPC11Q04307 110 aaPredicted RBP0.7□□□□□ -2.3
RKR1YMR247C CSM3Q04659 317 aa0.7□□□□□ -2.3
RKR1YMR247C FAR8Q05040 523 aa0.7□□□□□ -2.3
RKR1YMR247C CTS2Q06350 511 aa0.7□□□□□ -2.3
RKR1YMR247C ABP140Q08641 628 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C RRS1Q08746 203 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C FRE8Q12209 686 aa0.7□□□□□ -2.3
RKR1YMR247C YPS3Q12303 508 aa0.7□□□□□ -2.3
RKR1YMR247C PRR2Q12310 699 aa0.7□□□□□ -2.3
RKR1YMR247C SNU23Q12368 194 aaPredicted RBP0.7□□□□□ -2.3
RKR1YMR247C RPO41P13433 1351 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C LTE1P07866 1435 aa0.7□□□□□ -2.3
RKR1YMR247C DBR1P24309 405 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C SUR1P33300 382 aa0.7□□□□□ -2.3
RKR1YMR247C MRPL10P36520 322 aa0.7□□□□□ -2.3
RKR1YMR247C SSH1P38353 490 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C FAD1P38913 306 aa0.7□□□□□ -2.3
RKR1YMR247C YER184CP39961 794 aa0.7□□□□□ -2.3
RKR1YMR247C YER189WP40104 122 aa0.7□□□□□ -2.3
RKR1YMR247C YIL059CP40520 121 aa0.7□□□□□ -2.3
RKR1YMR247C ABM1P47146 123 aa0.7□□□□□ -2.3
RKR1YMR247C VEL1P53058 206 aa0.7□□□□□ -2.3
RKR1YMR247C ALG11P53954 548 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C SNX41Q04053 625 aa0.7□□□□□ -2.3
RKR1YMR247C SEC13Q04491 297 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C ARV1Q06541 321 aa0.7□□□□□ -2.3
RKR1YMR247C SYC1Q08553 188 aaPredicted RBP0.7□□□□□ -2.3
RKR1YMR247C RUD3Q12234 484 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C YOR020W-AQ3E824 90 aa0.7□□□□□ -2.3
RKR1YMR247C TRM732Q03496 1420 aa0.7□□□□□ -2.3
RKR1YMR247C RPL4AP10664 362 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C GAL3P13045 520 aa0.7□□□□□ -2.3
RKR1YMR247C TFS1P14306 219 aa0.7□□□□□ -2.3
RKR1YMR247C ERD1P16151 362 aa0.7□□□□□ -2.3
RKR1YMR247C STF2P16965 84 aa0.7□□□□□ -2.3
RKR1YMR247C PPH21P23594 369 aa0.7□□□□□ -2.3
RKR1YMR247C CWP1P28319 239 aa0.7□□□□□ -2.3
RKR1YMR247C DOA4P32571 926 aa0.7□□□□□ -2.3
RKR1YMR247C SER3P40054 469 aa0.7□□□□□ -2.3
RKR1YMR247C DSE1P40077 573 aa0.7□□□□□ -2.3
RKR1YMR247C PEX17P40155 199 aa0.7□□□□□ -2.3
RKR1YMR247C OST2P46964 130 aa0.7□□□□□ -2.3
RKR1YMR247C OST3P48439 350 aa0.7□□□□□ -2.3
RKR1YMR247C RPL4BP49626 362 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C YGL118CP53132 145 aa0.7□□□□□ -2.3
RKR1YMR247C BIO4P53630 237 aa0.7□□□□□ -2.3
RKR1YMR247C CUS2P53830 285 aaPredicted RBP0.7□□□□□ -2.3
RKR1YMR247C ADH6Q04894 360 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C GGA1Q06336 557 aa0.7□□□□□ -2.3
RKR1YMR247C YOL159C-AQ3E769 90 aa0.7□□□□□ -2.3
RKR1YMR247C FIG2P25653 1609 aa0.7□□□□□ -2.3
RKR1YMR247C YMR316C-AI2HB70 103 aa0.7□□□□□ -2.3
RKR1YMR247C YLR462WO13556 202 aa0.7□□□□□ -2.3
RKR1YMR247C SPT6P23615 1451 aaKnown RBP0.7□□□□□ -2.3
RKR1YMR247C MRPL37P36532 105 aa0.7□□□□□ -2.3
RKR1YMR247C PHO89P38361 574 aa0.7□□□□□ -2.3
RKR1YMR247C ATG7P38862 630 aa0.7□□□□□ -2.3
RKR1YMR247C ALP1P38971 573 aa0.7□□□□□ -2.3
RKR1YMR247C YEL075CP39972 122 aa0.7□□□□□ -2.3
RKR1YMR247C RTT105P40063 208 aa0.7□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 86.9 ms