RNA–Protein interactions for RNA: YBR228W

SLX1, Transcript of Endonuclease involved in DNA recombination and repair, yeast

Gene SLX1, Length 915 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SLX1	YBR228W	ZWF1	P11412	505 aa	Known RBP	3.74	□□□□□ -1.81
SLX1	YBR228W	SNF4	P12904	322 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	URA4	P20051	364 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	RPS1B	P23248	255 aa	Known RBP	3.74	□□□□□ -1.81
SLX1	YBR228W	CLB3	P24870	427 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	MXR2	P25566	168 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	YIM1	P28625	365 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	LHP1	P33399	275 aa	Known RBP	3.74	□□□□□ -1.81
SLX1	YBR228W	ZTA1	P38230	334 aa	Known RBP	3.74	□□□□□ -1.81
SLX1	YBR228W	SLM4	P38247	162 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	MPM1	P40364	252 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	AGP3	P43548	558 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	TRM9	P49957	279 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	ATG38	Q05789	226 aa	Known RBP	3.74	□□□□□ -1.81
SLX1	YBR228W	RRT8	Q08219	342 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	YOR342C	Q12182	319 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	SKS1	Q12505	502 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	SEC39	Q12745	709 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	YOL159C-A	Q3E769	90 aa		3.74	□□□□□ -1.81
SLX1	YBR228W	PEP4	P07267	405 aa	Known RBP	3.73	□□□□□ -1.81
SLX1	YBR228W	RPB5	P20434	215 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	DAL82	P21705	255 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	RPS27A	P35997	82 aa	Known RBP	3.73	□□□□□ -1.81
SLX1	YBR228W	RPS27B	P38711	82 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	SNL1	P40548	159 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	YGR210C	P42942	411 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	YGR266W	P53326	701 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	GRX3	Q03835	250 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	SPO77	Q06134	477 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	DBP9	Q06218	594 aa	Known RBP	3.73	□□□□□ -1.81
SLX1	YBR228W	DCI1	Q08558	271 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	FDH1	Q08911	376 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	YIL046W-A	Q3E7Z4	54 aa		3.73	□□□□□ -1.81
SLX1	YBR228W	FBA1	P14540	359 aa	Known RBP	3.72	□□□□□ -1.81
SLX1	YBR228W	DBP3	P20447	523 aa	Known RBP	3.72	□□□□□ -1.81
SLX1	YBR228W	GRR1	P24814	1151 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	UBC8	P28263	218 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	APE2	P32454	952 aa	Known RBP	3.72	□□□□□ -1.81
SLX1	YBR228W	GDH2	P33327	1092 aa	Known RBP	3.72	□□□□□ -1.81
SLX1	YBR228W	SRO77	P38163	1010 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	TRR2	P38816	342 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.72	□□□□□ -1.81	not detected
SLX1	YBR228W	YGR201C	P42936	225 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	JHD2	P47156	728 aa	Predicted RBP	3.72	□□□□□ -1.81
SLX1	YBR228W	RPS12	P48589	143 aa	Known RBP	3.72	□□□□□ -1.81
SLX1	YBR228W	RRN5	Q02983	363 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	YDR239C	Q03780	787 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	NDL1	Q06568	189 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	DTD1	Q07648	150 aa	Known RBP	3.72	□□□□□ -1.81
SLX1	YBR228W	YEH1	Q07804	573 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	YPL272C	Q08984	517 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	VIK1	Q12045	647 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	IRA1	P18963	3092 aa		3.72	□□□□□ -1.81
SLX1	YBR228W	GCN1	P33892	2672 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	PRP8	P33334	2413 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	GPH1	P06738	902 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	RHO1	P06780	209 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	CBS1	P14066	229 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	AAC3	P18238	307 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	WBP1	P33767	430 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	HCS1	P34243	683 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	FES1	P38260	290 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	BIG1	P38813	335 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	THO1	P40040	218 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	UTP25	P40498	721 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	ICE2	P40499	491 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	CAK1	P43568	368 aa	Predicted RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	VMA10	P48836	114 aa	Known RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	GPI8	P49018	411 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	TPC1	P53257	314 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	CAF40	P53829	373 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	MTQ1	P53944	314 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	KRE28	Q04431	385 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	YPR174C	Q06616	221 aa	Predicted RBP	3.71	□□□□□ -1.82
SLX1	YBR228W	YPR091C	Q06833	770 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	LOT6	Q07923	191 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	SFM1	Q12314	213 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	MRX4	Q12467	430 aa		3.71	□□□□□ -1.82
SLX1	YBR228W	PET9	P18239	318 aa	Known RBP	3.7	□□□□□ -1.82
SLX1	YBR228W	YCK1	P23291	538 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	GPI12	P23797	304 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	CTR86	P25355	563 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	STP22	P25604	385 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.7	□□□□□ -1.82	not detected
SLX1	YBR228W	FAA1	P30624	700 aa	Known RBP	3.7	□□□□□ -1.82
SLX1	YBR228W	MRPL6	P32904	214 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	NUF2	P33895	451 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	VPS51	P36116	164 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	SWD3	P38123	315 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	YRB2	P40517	327 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	GVP36	P40531	326 aa	Known RBP	3.7	□□□□□ -1.82
SLX1	YBR228W	MET28	P40573	187 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	FAR7	P43592	221 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	ALB1	P47019	175 aa	Predicted RBP	3.7	□□□□□ -1.82
SLX1	YBR228W	TWF1	P53250	332 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	SYF2	P53277	215 aa	Predicted RBP	3.7	□□□□□ -1.82
SLX1	YBR228W	TPS1	Q00764	495 aa	Known RBP	3.7	□□□□□ -1.82
SLX1	YBR228W	YPL107W	Q02873	248 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	TLG1	Q03322	224 aa		3.7	□□□□□ -1.82
SLX1	YBR228W	NAT4	Q04751	285 aa		3.7	□□□□□ -1.82

Retrieved 100 of 5,963 RNA–protein pairs in 56.9 ms