Protein–RNA interactions for Protein: P49957

TRM9, tRNA (carboxymethyluridine(34)-5-O)-methyltransferase, yeastyeast

Predictions only

Length 279 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TRM9P49957 YML009W-BYML009W-B 477 nt19.29■□□□□ 0.68
TRM9P49957 NSR1YGR159C 1245 nt19.07■□□□□ 0.64
TRM9P49957 NOP1YDL014W 984 nt18.91■□□□□ 0.62
TRM9P49957 YKL036CYKL036C 393 nt17.66■□□□□ 0.42
TRM9P49957 Q0297Q0297 156 nt16.66■□□□□ 0.26
TRM9P49957 MDJ1YFL016C 1536 nt16.61■□□□□ 0.25
TRM9P49957 SRX1YKL086W 384 nt16.54■□□□□ 0.24
TRM9P49957 YJL027CYJL027C 417 nt16.49■□□□□ 0.23
TRM9P49957 SCS3YGL126W 1143 nt16.16■□□□□ 0.18
TRM9P49957 YCR051WYCR051W 669 nt15.63■□□□□ 0.09
TRM9P49957 YOL085CYOL085C 342 nt15.28■□□□□ 0.04
TRM9P49957 PKP1YIL042C 1185 nt14.94□□□□□ -0.02
TRM9P49957 RPP1BYDL130W 321 nt14.92□□□□□ -0.02
TRM9P49957 DBP2YNL112W 1641 nt14.85□□□□□ -0.03
TRM9P49957 TRN1tP(UGG)A 72 nt14.81□□□□□ -0.04
TRM9P49957 SUF9tP(UGG)F 72 nt14.81□□□□□ -0.04
TRM9P49957 SUF8tP(UGG)H 72 nt14.81□□□□□ -0.04
TRM9P49957 tP(UGG)LtP(UGG)L 72 nt14.81□□□□□ -0.04
TRM9P49957 SUF7tP(UGG)M 72 nt14.81□□□□□ -0.04
TRM9P49957 tP(UGG)N1tP(UGG)N1 72 nt14.81□□□□□ -0.04
TRM9P49957 tP(UGG)N2tP(UGG)N2 72 nt14.81□□□□□ -0.04
TRM9P49957 tP(UGG)O1tP(UGG)O1 72 nt14.81□□□□□ -0.04
TRM9P49957 SUF11tP(UGG)O2 72 nt14.81□□□□□ -0.04
TRM9P49957 SCJ1YMR214W 1134 nt14.72□□□□□ -0.05
TRM9P49957 CCC1YLR220W 969 nt14.56□□□□□ -0.08
TRM9P49957 ATS1YAL020C 1002 nt14.54□□□□□ -0.08
TRM9P49957 PET122YER153C 765 nt14.19□□□□□ -0.14
TRM9P49957 YBR190WYBR190W 312 nt14.19□□□□□ -0.14
TRM9P49957 SCR1SCR1 522 nt14.13□□□□□ -0.15
TRM9P49957 tP(UGG)O3tP(UGG)O3 72 nt14.07□□□□□ -0.16
TRM9P49957 RVS167YDR388W 1449 nt14.01□□□□□ -0.17
TRM9P49957 RRN5YLR141W 1092 nt13.81□□□□□ -0.2
TRM9P49957 RTC3YHR087W 336 nt13.79□□□□□ -0.2
TRM9P49957 YDJ1YNL064C 1230 nt13.66□□□□□ -0.22
TRM9P49957 SHR5YOL110W 714 nt13.6□□□□□ -0.23
TRM9P49957 RSB1YOR049C 1065 nt13.57□□□□□ -0.24
TRM9P49957 YER088W-BYER088W-B 147 nt13.54□□□□□ -0.24
TRM9P49957 PST2YDR032C 597 nt13.45□□□□□ -0.26
TRM9P49957 GAR1YHR089C 618 nt13.22□□□□□ -0.29
TRM9P49957 DEP1YAL013W 1218 nt13.03□□□□□ -0.32
TRM9P49957 URN1YPR152C 1398 nt13.03□□□□□ -0.32
TRM9P49957 YKL097CYKL097C 411 nt13.01□□□□□ -0.33
TRM9P49957 YNL208WYNL208W 600 nt12.95□□□□□ -0.34
TRM9P49957 RPN10YHR200W 807 nt12.93□□□□□ -0.34
TRM9P49957 SSA3YBL075C 1950 nt12.92□□□□□ -0.34
TRM9P49957 OPI9YLR338W 858 nt12.84□□□□□ -0.35
TRM9P49957 TIR1YER011W 765 nt12.81□□□□□ -0.36
TRM9P49957 SHU1YHL006C 453 nt12.81□□□□□ -0.36
TRM9P49957 PUT4YOR348C 1884 nt12.69□□□□□ -0.38
TRM9P49957 SAH1YER043C 1350 nt12.65□□□□□ -0.38
TRM9P49957 SSA1YAL005C 1929 nt12.6□□□□□ -0.39
TRM9P49957 ARE1YCR048W 1833 nt12.53□□□□□ -0.4
TRM9P49957 YAL037C-BYAL037C-B 975 nt12.47□□□□□ -0.41
TRM9P49957 PUN1YLR414C 792 nt12.47□□□□□ -0.41
TRM9P49957 YJR018WYJR018W 363 nt12.46□□□□□ -0.41
TRM9P49957 YOR139CYOR139C 393 nt12.45□□□□□ -0.42
TRM9P49957 SRB2YHR041C 633 nt12.41□□□□□ -0.42
TRM9P49957 YJR120WYJR120W 351 nt12.34□□□□□ -0.43
TRM9P49957 YGR021WYGR021W 873 nt12.32□□□□□ -0.44
TRM9P49957 YHR049C-AYHR049C-A 297 nt12.32□□□□□ -0.44
TRM9P49957 RPP2BYDR382W 333 nt12.28□□□□□ -0.44
TRM9P49957 HOM6YJR139C 1080 nt12.28□□□□□ -0.44
TRM9P49957 NPL3YDR432W 1245 nt12.27□□□□□ -0.45
TRM9P49957 WWM1YFL010C 636 nt12.26□□□□□ -0.45
TRM9P49957 POA1YBR022W 534 nt12.26□□□□□ -0.45
TRM9P49957 PTC2YER089C 1395 nt12.23□□□□□ -0.45
TRM9P49957 MNP1YGL068W 585 nt12.19□□□□□ -0.46
TRM9P49957 YOL037CYOL037C 354 nt12.16□□□□□ -0.46
TRM9P49957 YFL021C-AYFL021C-A 855 nt12.12□□□□□ -0.47
TRM9P49957 BDH2YAL061W 1254 nt12.1□□□□□ -0.47
TRM9P49957 RKM5YLR137W 1104 nt12.09□□□□□ -0.47
TRM9P49957 NAB2YGL122C 1578 nt12.08□□□□□ -0.48
TRM9P49957 INM2YDR287W 879 nt12.03□□□□□ -0.48
TRM9P49957 BUD23YCR047C 828 nt12.02□□□□□ -0.49
TRM9P49957 LSM3YLR438C-A 270 nt12.01□□□□□ -0.49
TRM9P49957 BSC6YOL137W 1494 nt11.96□□□□□ -0.49
TRM9P49957 DAL1YIR027C 1383 nt11.96□□□□□ -0.49
TRM9P49957 tM(CAU)CtM(CAU)C 72 nt11.95□□□□□ -0.5
TRM9P49957 IMT4tM(CAU)E 72 nt11.95□□□□□ -0.5
TRM9P49957 IMT3tM(CAU)J3 72 nt11.95□□□□□ -0.5
TRM9P49957 IMT1tM(CAU)O1 72 nt11.95□□□□□ -0.5
TRM9P49957 IMT2tM(CAU)P 72 nt11.95□□□□□ -0.5
TRM9P49957 FIS1YIL065C 468 nt11.93□□□□□ -0.5
TRM9P49957 YBL100CYBL100C 315 nt11.91□□□□□ -0.5
TRM9P49957 YLR281CYLR281C 468 nt11.84□□□□□ -0.51
TRM9P49957 FPR4YLR449W 1179 nt11.84□□□□□ -0.51
TRM9P49957 PHO4YFR034C 939 nt11.83□□□□□ -0.52
TRM9P49957 TRM9YML014W 840 nt11.8□□□□□ -0.52
TRM9P49957 FUN26YAL022C 1554 nt11.78□□□□□ -0.52
TRM9P49957 PUS2YGL063W 1113 nt11.76□□□□□ -0.53
TRM9P49957 WHI5YOR083W 888 nt11.74□□□□□ -0.53
TRM9P49957 CCT6YDR188W 1641 nt11.71□□□□□ -0.53
TRM9P49957 SUF2tP(AGG)C 72 nt11.58□□□□□ -0.56
TRM9P49957 SUF10tP(AGG)N 72 nt11.58□□□□□ -0.56
TRM9P49957 IMP2'YIL154C 1041 nt11.57□□□□□ -0.56
TRM9P49957 YLR154C-GYLR154C-G 150 nt11.57□□□□□ -0.56
TRM9P49957 MOT3YMR070W 1473 nt11.57□□□□□ -0.56
TRM9P49957 YPS1YLR120C 1710 nt11.55□□□□□ -0.56
TRM9P49957 DSK2YMR276W 1122 nt11.54□□□□□ -0.56
TRM9P49957 ALF1YNL148C 765 nt11.54□□□□□ -0.56
Retrieved 100 of 7,029 protein–RNA pairs in 34.9 ms