RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W HXT14P42833 540 aa7.47□□□□□ -1.21
UFD1YGR048W YJR056CP47115 236 aa7.47□□□□□ -1.21
UFD1YGR048W SOL1P50278 321 aa7.47□□□□□ -1.21
UFD1YGR048W YGR127WP53275 312 aa7.47□□□□□ -1.21
UFD1YGR048W YGR283CP53336 341 aaPredicted RBP7.47□□□□□ -1.21
UFD1YGR048W MEP3P53390 489 aa7.47□□□□□ -1.21
UFD1YGR048W YNL018CP53976 612 aa7.47□□□□□ -1.21
UFD1YGR048W NUP100Q02629 959 aa7.47□□□□□ -1.21
UFD1YGR048W TMA17Q12513 150 aa7.47□□□□□ -1.21
UFD1YGR048W ECM29P38737 1868 aa7.47□□□□□ -1.21
UFD1YGR048W CET1O13297 549 aaPredicted RBP7.46□□□□□ -1.22
UFD1YGR048W HXK2P04807 486 aaKnown RBP7.46□□□□□ -1.22
UFD1YGR048W MET8P15807 274 aa7.46□□□□□ -1.22
UFD1YGR048W SEC22P22214 214 aa7.46□□□□□ -1.22
UFD1YGR048W MRP17P28778 131 aa7.46□□□□□ -1.22
UFD1YGR048W AIM3P38266 947 aaKnown RBP7.46□□□□□ -1.22
UFD1YGR048W YHR035WP38769 630 aa7.46□□□□□ -1.22
UFD1YGR048W YHR122WP38829 231 aa7.46□□□□□ -1.22
UFD1YGR048W HAT2P39984 401 aa7.46□□□□□ -1.22
UFD1YGR048W FLX1P40464 311 aa7.46□□□□□ -1.22
UFD1YGR048W PAU15P40585 124 aa7.46□□□□□ -1.22
UFD1YGR048W PFS2P42841 465 aaKnown RBP7.46□□□□□ -1.22
UFD1YGR048W SKP2P42843 763 aa7.46□□□□□ -1.22
UFD1YGR048W ZIM17P42844 174 aa7.46□□□□□ -1.22
UFD1YGR048W YJR111CP47148 283 aaKnown RBP7.46□□□□□ -1.22
UFD1YGR048W BUL1P48524 976 aa7.46□□□□□ -1.22
UFD1YGR048W YGL114WP53134 725 aa7.46□□□□□ -1.22
UFD1YGR048W SLX9P53251 210 aaPredicted RBP7.46□□□□□ -1.22
UFD1YGR048W AAH1P53909 347 aa7.46□□□□□ -1.22
UFD1YGR048W RHO3Q00245 231 aaKnown RBP7.46□□□□□ -1.22
UFD1YGR048W RSM10Q03201 203 aa7.46□□□□□ -1.22
UFD1YGR048W FIT1Q04433 528 aa7.46□□□□□ -1.22
UFD1YGR048W SHH3Q04487 196 aa7.46□□□□□ -1.22
UFD1YGR048W SEC13Q04491 297 aaKnown RBP7.46□□□□□ -1.22
UFD1YGR048W YPR127WQ06494 345 aa7.46□□□□□ -1.22
UFD1YGR048W THI13Q07748 340 aa7.46□□□□□ -1.22
UFD1YGR048W PLB3Q08108 686 aa7.46□□□□□ -1.22
UFD1YGR048W CSM4Q08955 156 aa7.46□□□□□ -1.22
UFD1YGR048W ATG41Q12048 136 aa7.46□□□□□ -1.22
UFD1YGR048W POM33Q12164 279 aa7.46□□□□□ -1.22
UFD1YGR048W YNR034W-AQ3E841 98 aa7.46□□□□□ -1.22
UFD1YGR048W YIL134C-AQ45U18 67 aa7.46□□□□□ -1.22
UFD1YGR048W RAS2P01120 322 aaKnown RBP7.45□□□□□ -1.22
UFD1YGR048W HTS1P07263 546 aaKnown RBP7.45□□□□□ -1.22
UFD1YGR048W PRE7P23724 241 aaKnown RBP7.45□□□□□ -1.22
UFD1YGR048W KIN82P25341 720 aa7.45□□□□□ -1.22
UFD1YGR048W VMA3P25515 160 aa7.45□□□□□ -1.22
UFD1YGR048W PEX4P29340 183 aa7.45□□□□□ -1.22
UFD1YGR048W CTF13P35203 478 aa7.45□□□□□ -1.22
UFD1YGR048W SHE2P36068 246 aaKnown RBP RIP-Chip data7.45□□□□□ -1.22not detected
UFD1YGR048W YBR284WP38150 797 aa7.45□□□□□ -1.22
UFD1YGR048W ARO9P38840 513 aaPredicted RBP7.45□□□□□ -1.22
UFD1YGR048W IME4P41833 600 aa7.45□□□□□ -1.22
UFD1YGR048W MAF1P41910 395 aa7.45□□□□□ -1.22
UFD1YGR048W ASN1P49089 572 aaKnown RBP7.45□□□□□ -1.22
UFD1YGR048W NSA1P53136 463 aaPredicted RBP7.45□□□□□ -1.22
UFD1YGR048W YGR042WP53227 271 aa7.45□□□□□ -1.22
UFD1YGR048W YNR040WP53736 256 aa7.45□□□□□ -1.22
UFD1YGR048W FRE4P53746 719 aa7.45□□□□□ -1.22
UFD1YGR048W SAM50P53969 484 aa7.45□□□□□ -1.22
UFD1YGR048W ASI3P53983 676 aa7.45□□□□□ -1.22
UFD1YGR048W RHO4Q00246 291 aa7.45□□□□□ -1.22
UFD1YGR048W YPL014WQ02606 381 aa7.45□□□□□ -1.22
UFD1YGR048W STD1Q02794 444 aa7.45□□□□□ -1.22
UFD1YGR048W AIM32Q04689 311 aa7.45□□□□□ -1.22
UFD1YGR048W RTN1Q04947 295 aaKnown RBP7.45□□□□□ -1.22
UFD1YGR048W MRX9Q07349 420 aaKnown RBP7.45□□□□□ -1.22
UFD1YGR048W SRO7Q12038 1033 aa7.45□□□□□ -1.22
UFD1YGR048W YPR027CQ12079 277 aa7.45□□□□□ -1.22
UFD1YGR048W UPC2Q12151 913 aa7.45□□□□□ -1.22
UFD1YGR048W CTT1P06115 562 aa7.44□□□□□ -1.22
UFD1YGR048W DST1P07273 309 aa7.44□□□□□ -1.22
UFD1YGR048W YML003WP0CF16 290 aa7.44□□□□□ -1.22
UFD1YGR048W PRE4P30657 266 aa7.44□□□□□ -1.22
UFD1YGR048W TGL1P34163 548 aa7.44□□□□□ -1.22
UFD1YGR048W PNT1P38969 423 aa7.44□□□□□ -1.22
UFD1YGR048W SUR2P38992 349 aa7.44□□□□□ -1.22
UFD1YGR048W EMC5P40540 141 aa7.44□□□□□ -1.22
UFD1YGR048W AVT1P47082 602 aa7.44□□□□□ -1.22
UFD1YGR048W SKP1P52286 194 aa7.44□□□□□ -1.22
UFD1YGR048W BOL2P53082 120 aa7.44□□□□□ -1.22
UFD1YGR048W YGR017WP53210 297 aa7.44□□□□□ -1.22
UFD1YGR048W TNA1P53322 534 aa7.44□□□□□ -1.22
UFD1YGR048W BUD17P53727 317 aa7.44□□□□□ -1.22
UFD1YGR048W YSA1Q01976 231 aa7.44□□□□□ -1.22
UFD1YGR048W YMR253CQ04835 414 aa7.44□□□□□ -1.22
UFD1YGR048W BLS1Q06071 122 aa7.44□□□□□ -1.22
UFD1YGR048W TY1A-NL1Q12391 440 aaKnown RBP7.44□□□□□ -1.22
UFD1YGR048W TFC7Q12415 435 aa7.44□□□□□ -1.22
UFD1YGR048W ASP3-2P0CX77 362 aa7.43□□□□□ -1.22
UFD1YGR048W ASP3-3P0CX78 362 aa7.43□□□□□ -1.22
UFD1YGR048W ASP3-4P0CX79 362 aa7.43□□□□□ -1.22
UFD1YGR048W ASP3-1P0CZ17 362 aa7.43□□□□□ -1.22
UFD1YGR048W HAP3P13434 144 aa7.43□□□□□ -1.22
UFD1YGR048W AMD1P15274 810 aaKnown RBP7.43□□□□□ -1.22
UFD1YGR048W BUD5P25300 642 aaPredicted RBP7.43□□□□□ -1.22
UFD1YGR048W PBN1P25580 416 aa7.43□□□□□ -1.22
UFD1YGR048W AIM26P32858 118 aa7.43□□□□□ -1.22
UFD1YGR048W MTC2P34246 357 aa7.43□□□□□ -1.22
UFD1YGR048W TVP38P36164 337 aa7.43□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 42.9 ms