RNA–Protein interactions for RNA: YPL019C

VTC3, Transcript of Subunit of vacuolar transporter chaperone (VTC) complex, yeast

Gene VTC3, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VTC3	YPL019C	SSM4	P40318	1319 aa		3.45	□□□□□ -1.86
VTC3	YPL019C	RTC1	Q08281	1341 aa		3.45	□□□□□ -1.86
VTC3	YPL019C	UGA2	P38067	497 aa		3.45	□□□□□ -1.86
VTC3	YPL019C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	3.45	□□□□□ -1.86	not detected
VTC3	YPL019C	GTT3	P39996	337 aa		3.45	□□□□□ -1.86
VTC3	YPL019C	YGR273C	P53329	174 aa		3.45	□□□□□ -1.86
VTC3	YPL019C	MAK21	Q12176	1025 aa	Known RBP	3.45	□□□□□ -1.86
VTC3	YPL019C	EDE1	P34216	1381 aa		3.45	□□□□□ -1.86
VTC3	YPL019C	YBL086C	P38177	466 aa		3.44	□□□□□ -1.86
VTC3	YPL019C	SSA1	P10591	642 aa	Known RBP	3.44	□□□□□ -1.86
VTC3	YPL019C	GUT1	P32190	709 aa		3.44	□□□□□ -1.86
VTC3	YPL019C	ILV3	P39522	585 aa	Known RBP	3.44	□□□□□ -1.86
VTC3	YPL019C	CPS1	P27614	576 aa		3.43	□□□□□ -1.86
VTC3	YPL019C	RPN11	P43588	306 aa	Known RBP	3.43	□□□□□ -1.86
VTC3	YPL019C	GRE2	Q12068	342 aa	Known RBP	3.43	□□□□□ -1.86
VTC3	YPL019C	KEX1	P09620	729 aa		3.43	□□□□□ -1.86
VTC3	YPL019C	PRP5	P21372	849 aa	Predicted RBP	3.43	□□□□□ -1.86
VTC3	YPL019C	RGA1	P39083	1007 aa		3.42	□□□□□ -1.86
VTC3	YPL019C	ALD2	P47771	506 aa		3.42	□□□□□ -1.86
VTC3	YPL019C	RLF2	Q12495	606 aa		3.42	□□□□□ -1.86
VTC3	YPL019C	YJL181W	P46987	611 aa		3.42	□□□□□ -1.86
VTC3	YPL019C	ATH1	P48016	1211 aa		3.42	□□□□□ -1.86
VTC3	YPL019C	URB1	P34241	1764 aa	Known RBP	3.41	□□□□□ -1.86
VTC3	YPL019C	ROM2	P51862	1356 aa	Known RBP	3.41	□□□□□ -1.86
VTC3	YPL019C	DOT5	P40553	215 aa		3.41	□□□□□ -1.86
VTC3	YPL019C	NOP7	P53261	605 aa	Known RBP	3.41	□□□□□ -1.86
VTC3	YPL019C	RCM1	P53972	490 aa		3.41	□□□□□ -1.86
VTC3	YPL019C	WSC3	Q12215	556 aa		3.41	□□□□□ -1.86
VTC3	YPL019C	TY4B-H	P0C2J7	1802 aa		3.41	□□□□□ -1.86
VTC3	YPL019C	TY4B-J	P47024	1803 aa		3.41	□□□□□ -1.86
VTC3	YPL019C	PSK1	P31374	1356 aa		3.4	□□□□□ -1.86
VTC3	YPL019C	SSA2	P10592	639 aa	Known RBP	3.4	□□□□□ -1.86
VTC3	YPL019C	YEF3	P16521	1044 aa	Known RBP	3.4	□□□□□ -1.86
VTC3	YPL019C	KTR1	P27810	393 aa	Known RBP	3.4	□□□□□ -1.86
VTC3	YPL019C	ORC6	P38826	435 aa		3.4	□□□□□ -1.86
VTC3	YPL019C	PKC1	P24583	1151 aa		3.4	□□□□□ -1.87
VTC3	YPL019C	MSB3	P48566	633 aa	Predicted RBP	3.4	□□□□□ -1.87
VTC3	YPL019C	TAF8	Q03750	510 aa		3.4	□□□□□ -1.87
VTC3	YPL019C	GYP5	Q12344	894 aa		3.4	□□□□□ -1.87
VTC3	YPL019C	PRP40	P33203	583 aa	Known RBP	3.39	□□□□□ -1.87
VTC3	YPL019C	ESL2	P36168	1195 aa		3.39	□□□□□ -1.87
VTC3	YPL019C	TIF11	P38912	153 aa	Known RBP	3.39	□□□□□ -1.87
VTC3	YPL019C	LYS4	P49367	693 aa	Predicted RBP	3.39	□□□□□ -1.87
VTC3	YPL019C	LAM6	Q08001	693 aa		3.39	□□□□□ -1.87
VTC3	YPL019C	YOL036W	Q08206	761 aa		3.39	□□□□□ -1.87
VTC3	YPL019C	TCB1	Q12466	1186 aa		3.39	□□□□□ -1.87
VTC3	YPL019C	NPR2	P39923	615 aa		3.39	□□□□□ -1.87
VTC3	YPL019C	TFB3	Q03290	321 aa		3.39	□□□□□ -1.87
VTC3	YPL019C	ADE6	P38972	1358 aa	Known RBP	3.39	□□□□□ -1.87
VTC3	YPL019C	RSF2	P46974	1380 aa		3.39	□□□□□ -1.87
VTC3	YPL019C	GAP1	P19145	602 aa	Predicted RBP	3.38	□□□□□ -1.87
VTC3	YPL019C	PSE1	P32337	1089 aa	Known RBP	3.38	□□□□□ -1.87
VTC3	YPL019C	ATF2	P53296	535 aa		3.38	□□□□□ -1.87
VTC3	YPL019C	HPC2	Q01448	625 aa		3.38	□□□□□ -1.87
VTC3	YPL019C	FOX2	Q02207	900 aa	Known RBP	3.38	□□□□□ -1.87
VTC3	YPL019C	PPH3	P32345	308 aa		3.38	□□□□□ -1.87
VTC3	YPL019C	RAD54	P32863	898 aa		3.38	□□□□□ -1.87
VTC3	YPL019C	DCW1	P36091	449 aa		3.38	□□□□□ -1.87
VTC3	YPL019C	FKS3	Q04952	1785 aa		3.38	□□□□□ -1.87
VTC3	YPL019C	RGR1	P19263	1082 aa		3.37	□□□□□ -1.87
VTC3	YPL019C	ENP1	P38333	483 aa	Known RBP	3.37	□□□□□ -1.87
VTC3	YPL019C	SET4	P42948	560 aa		3.37	□□□□□ -1.87
VTC3	YPL019C	SLM3	Q12093	417 aa		3.37	□□□□□ -1.87
VTC3	YPL019C	MPH3	P0CE00	602 aa		3.36	□□□□□ -1.87
VTC3	YPL019C	CTH1	P47976	325 aa		3.36	□□□□□ -1.87
VTC3	YPL019C	YRF1-3	P0CX14	1859 aa		3.36	□□□□□ -1.87
VTC3	YPL019C	YRF1-7	P0CX15	1859 aa		3.36	□□□□□ -1.87
VTC3	YPL019C	YRF1-6	P53819	1859 aa		3.36	□□□□□ -1.87
VTC3	YPL019C	YKL133C	P36066	463 aa		3.36	□□□□□ -1.87
VTC3	YPL019C	AI4	P03878	556 aa		3.35	□□□□□ -1.87
VTC3	YPL019C	SLI15	P38283	698 aa		3.35	□□□□□ -1.87
VTC3	YPL019C	RRD1	P40454	393 aa	Known RBP	3.35	□□□□□ -1.87
VTC3	YPL019C	MVP1	P40959	511 aa	Known RBP	3.35	□□□□□ -1.87
VTC3	YPL019C	SPT7	P35177	1332 aa		3.35	□□□□□ -1.87
VTC3	YPL019C	TYW1	Q08960	810 aa	Known RBP	3.35	□□□□□ -1.87
VTC3	YPL019C	LDB19	Q12502	818 aa		3.35	□□□□□ -1.87
VTC3	YPL019C	COB	P00163	385 aa		3.34	□□□□□ -1.87
VTC3	YPL019C	MTR4	P47047	1073 aa	Known RBP	3.34	□□□□□ -1.87
VTC3	YPL019C	PRP43	P53131	767 aa	Known RBP	3.34	□□□□□ -1.87
VTC3	YPL019C	LEU2	P04173	364 aa	Predicted RBP	3.34	□□□□□ -1.88
VTC3	YPL019C	CSE4	P36012	229 aa		3.34	□□□□□ -1.88
VTC3	YPL019C	YKR075C	P36155	307 aa		3.34	□□□□□ -1.88
VTC3	YPL019C	CSN12	P47130	423 aa		3.34	□□□□□ -1.88
VTC3	YPL019C	KIC1	P38692	1080 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	XKS1	P42826	600 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	DAN4	P47179	1161 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	NIS1	P53939	407 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	ALD3	P54114	506 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	YRF1-4	O13559	1382 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	SPE2	P21182	396 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	CDC73	Q06697	393 aa		3.33	□□□□□ -1.88
VTC3	YPL019C	HTA1	P04911	132 aa	Known RBP	3.32	□□□□□ -1.88
VTC3	YPL019C	HTA2	P04912	132 aa		3.32	□□□□□ -1.88
VTC3	YPL019C	RPS24A	P0CX31	135 aa	Known RBP	3.32	□□□□□ -1.88
VTC3	YPL019C	RPS24B	P0CX32	135 aa	Known RBP	3.32	□□□□□ -1.88
VTC3	YPL019C	YEL023C	P39992	682 aa		3.32	□□□□□ -1.88
VTC3	YPL019C	ATG32	P40458	529 aa		3.32	□□□□□ -1.88
VTC3	YPL019C	SCJ1	P25303	377 aa		3.32	□□□□□ -1.88
VTC3	YPL019C	BIM1	P40013	344 aa		3.32	□□□□□ -1.88
VTC3	YPL019C	TEA1	P47988	759 aa		3.32	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 61.2 ms