RNA–Protein interactions for RNA: YOR157C

PUP1, Transcript of Beta 2 subunit of the 20S proteasome, yeast

Gene PUP1, Length 786 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUP1	YOR157C	GAS4	Q08271	471 aa		12.01	□□□□□ -0.49
PUP1	YOR157C	YML133C	Q03099	1374 aa		11.98	□□□□□ -0.49
PUP1	YOR157C	YLL067C	Q07888	1374 aa		11.98	□□□□□ -0.49
PUP1	YOR157C	YLL066C	Q99208	1374 aa		11.98	□□□□□ -0.49
PUP1	YOR157C	RRT14	P40470	206 aa		11.97	□□□□□ -0.49
PUP1	YOR157C	DUS1	P53759	423 aa	Known RBP	11.97	□□□□□ -0.49
PUP1	YOR157C	GRX1	P25373	110 aa	Known RBP	11.95	□□□□□ -0.5
PUP1	YOR157C	FPK1	P53739	893 aa		11.95	□□□□□ -0.5
PUP1	YOR157C	SLI15	P38283	698 aa		11.94	□□□□□ -0.5
PUP1	YOR157C	OSM1	P21375	501 aa	Known RBP	11.92	□□□□□ -0.5
PUP1	YOR157C	TOP1	P04786	769 aa		11.91	□□□□□ -0.5
PUP1	YOR157C	CTI6	Q08923	506 aa		11.91	□□□□□ -0.5
PUP1	YOR157C	THS1	P04801	734 aa	Known RBP	11.9	□□□□□ -0.5
PUP1	YOR157C	YLR278C	Q05854	1341 aa		11.89	□□□□□ -0.51
PUP1	YOR157C	NYV1	Q12255	253 aa		11.89	□□□□□ -0.51
PUP1	YOR157C	INP54	Q08227	384 aa	Known RBP	11.88	□□□□□ -0.51
PUP1	YOR157C	ETP1	P38748	585 aa	Known RBP	11.87	□□□□□ -0.51
PUP1	YOR157C	ORC1	P54784	914 aa	Predicted RBP	11.87	□□□□□ -0.51
PUP1	YOR157C	TUM1	Q08686	304 aa	Known RBP	11.87	□□□□□ -0.51
PUP1	YOR157C	RET1	P22276	1149 aa	Known RBP	11.85	□□□□□ -0.51
PUP1	YOR157C	SMY1	P32364	656 aa	Known RBP	11.84	□□□□□ -0.51
PUP1	YOR157C	YBP2	P53169	641 aa		11.84	□□□□□ -0.51
PUP1	YOR157C	SDH2	P21801	266 aa		11.82	□□□□□ -0.52
PUP1	YOR157C	ATG20	Q07528	640 aa		11.82	□□□□□ -0.52
PUP1	YOR157C	ICL1	P28240	557 aa	Predicted RBP	11.81	□□□□□ -0.52
PUP1	YOR157C	RTF1	P53064	558 aa		11.81	□□□□□ -0.52
PUP1	YOR157C	POM152	P39685	1337 aa		11.81	□□□□□ -0.52
PUP1	YOR157C	PDI1	P17967	522 aa	Known RBP	11.8	□□□□□ -0.52
PUP1	YOR157C	PFF1	P38244	976 aa		11.8	□□□□□ -0.52
PUP1	YOR157C	NST1	P53935	1240 aa		11.8	□□□□□ -0.52
PUP1	YOR157C	VHR2	P40041	505 aa		11.78	□□□□□ -0.52
PUP1	YOR157C	AUS1	Q08409	1394 aa		11.78	□□□□□ -0.52
PUP1	YOR157C	RTG2	P32608	588 aa	Known RBP	11.77	□□□□□ -0.53
PUP1	YOR157C	FAP1	P53971	965 aa		11.77	□□□□□ -0.53
PUP1	YOR157C	FAS2	P19097	1887 aa	Known RBP	11.76	□□□□□ -0.53
PUP1	YOR157C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	11.76	□□□□□ -0.53	not detected
PUP1	YOR157C	SEC3	P33332	1336 aa	Known RBP	11.75	□□□□□ -0.53
PUP1	YOR157C	SHC1	P39000	512 aa		11.73	□□□□□ -0.53
PUP1	YOR157C	PMD1	P32634	1753 aa		11.72	□□□□□ -0.53
PUP1	YOR157C	MAC1	P35192	417 aa		11.72	□□□□□ -0.53
PUP1	YOR157C	TEA1	P47988	759 aa		11.72	□□□□□ -0.53
PUP1	YOR157C	HIM1	Q06674	414 aa		11.72	□□□□□ -0.53
PUP1	YOR157C	NUP145	P49687	1317 aa		11.71	□□□□□ -0.53
PUP1	YOR157C	CAF20	P12962	161 aa	Known RBP	11.71	□□□□□ -0.53
PUP1	YOR157C	FKH1	P40466	484 aa		11.71	□□□□□ -0.53
PUP1	YOR157C	MLP1	Q02455	1875 aa	Known RBP	11.7	□□□□□ -0.54
PUP1	YOR157C	LPD1	P09624	499 aa	Known RBP	11.7	□□□□□ -0.54
PUP1	YOR157C	YKU70	P32807	602 aa		11.7	□□□□□ -0.54
PUP1	YOR157C	ERO1	Q03103	563 aa		11.7	□□□□□ -0.54
PUP1	YOR157C	GAP1	P19145	602 aa	Predicted RBP	11.68	□□□□□ -0.54
PUP1	YOR157C	YIL089W	P40500	205 aa		11.68	□□□□□ -0.54
PUP1	YOR157C	UTP10	P42945	1769 aa	Known RBP	11.68	□□□□□ -0.54
PUP1	YOR157C	GRX4	P32642	244 aa		11.67	□□□□□ -0.54
PUP1	YOR157C	IRC3	Q06683	689 aa		11.67	□□□□□ -0.54
PUP1	YOR157C	RPS9B	P05755	195 aa	Known RBP	11.66	□□□□□ -0.54
PUP1	YOR157C	SER1	P33330	395 aa	Known RBP	11.66	□□□□□ -0.54
PUP1	YOR157C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	11.66	□□□□□ -0.54	not detected
PUP1	YOR157C	HSP104	P31539	908 aa	Known RBP	11.65	□□□□□ -0.54
PUP1	YOR157C	RTG3	P38165	486 aa		11.65	□□□□□ -0.54
PUP1	YOR157C	TAP42	Q04372	366 aa		11.65	□□□□□ -0.54
PUP1	YOR157C	PIB1	Q06651	286 aa		11.65	□□□□□ -0.54
PUP1	YOR157C	DIP2	Q12220	943 aa	Predicted RBP	11.65	□□□□□ -0.54
PUP1	YOR157C	BDF2	Q07442	638 aa		11.64	□□□□□ -0.55
PUP1	YOR157C	FET4	P40988	552 aa		11.63	□□□□□ -0.55
PUP1	YOR157C	FIG2	P25653	1609 aa		11.63	□□□□□ -0.55
PUP1	YOR157C	RAT1	Q02792	1006 aa	Known RBP	11.62	□□□□□ -0.55
PUP1	YOR157C	RMT2	Q03305	412 aa		11.62	□□□□□ -0.55
PUP1	YOR157C	AIM7	Q12156	149 aa		11.61	□□□□□ -0.55
PUP1	YOR157C	YKR023W	P36119	530 aa	Known RBP	11.6	□□□□□ -0.55
PUP1	YOR157C	DSD1	P53095	428 aa		11.6	□□□□□ -0.55
PUP1	YOR157C	YGL082W	P53155	381 aa		11.6	□□□□□ -0.55
PUP1	YOR157C	TIF6	Q12522	245 aa	Known RBP	11.6	□□□□□ -0.55
PUP1	YOR157C	NOP53	Q12080	455 aa	Known RBP	11.59	□□□□□ -0.55
PUP1	YOR157C	GRX6	Q12438	231 aa		11.59	□□□□□ -0.55
PUP1	YOR157C	SRF1	Q12516	437 aa		11.59	□□□□□ -0.55
PUP1	YOR157C	SIT4	P20604	311 aa		11.58	□□□□□ -0.56
PUP1	YOR157C	YFR016C	P43597	1233 aa	Known RBP	11.58	□□□□□ -0.56
PUP1	YOR157C	MSM1	P22438	575 aa		11.57	□□□□□ -0.56
PUP1	YOR157C	SCT1	P32784	759 aa		11.57	□□□□□ -0.56
PUP1	YOR157C	PAM1	P37304	830 aa	Known RBP	11.57	□□□□□ -0.56
PUP1	YOR157C	GLC3	P32775	704 aa		11.56	□□□□□ -0.56
PUP1	YOR157C	VPS13	Q07878	3144 aa		11.55	□□□□□ -0.56
PUP1	YOR157C	PEA2	P40091	420 aa		11.55	□□□□□ -0.56
PUP1	YOR157C	TIM50	Q02776	476 aa		11.55	□□□□□ -0.56
PUP1	YOR157C	PHM7	Q12252	991 aa		11.55	□□□□□ -0.56
PUP1	YOR157C	MDG1	P53885	366 aa		11.54	□□□□□ -0.56
PUP1	YOR157C	CTF4	Q01454	927 aa		11.54	□□□□□ -0.56
PUP1	YOR157C	ALE1	Q08548	619 aa		11.54	□□□□□ -0.56
PUP1	YOR157C	DPL1	Q05567	589 aa		11.53	□□□□□ -0.56
PUP1	YOR157C	RPN1	P38764	993 aa	Known RBP	11.51	□□□□□ -0.57
PUP1	YOR157C	DIB1	Q06819	143 aa	Predicted RBP	11.51	□□□□□ -0.57
PUP1	YOR157C	EMP47	P43555	445 aa		11.5	□□□□□ -0.57
PUP1	YOR157C	NCS6	P53088	359 aa		11.5	□□□□□ -0.57
PUP1	YOR157C	TRM44	Q02648	567 aa	Known RBP	11.5	□□□□□ -0.57
PUP1	YOR157C	CWC15	Q03772	175 aa	Known RBP	11.5	□□□□□ -0.57
PUP1	YOR157C	KAR2	P16474	682 aa	Known RBP	11.49	□□□□□ -0.57
PUP1	YOR157C	FRD1	P32614	470 aa	Known RBP	11.49	□□□□□ -0.57
PUP1	YOR157C	VPS4	P52917	437 aa		11.49	□□□□□ -0.57
PUP1	YOR157C	UBP16	Q02863	499 aa		11.49	□□□□□ -0.57
PUP1	YOR157C	TYW1	Q08960	810 aa	Known RBP	11.49	□□□□□ -0.57

Retrieved 100 of 5,963 RNA–protein pairs in 37 ms