RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W TCB3Q03640 1545 aaKnown RBP6.13□□□□□ -1.43
PRE9YGR135W TYW1Q08960 810 aaKnown RBP6.12□□□□□ -1.43
PRE9YGR135W ASH1P34233 588 aa6.11□□□□□ -1.43
PRE9YGR135W RPL34BP40525 121 aaKnown RBP6.11□□□□□ -1.43
PRE9YGR135W CSN12P47130 423 aa6.11□□□□□ -1.43
PRE9YGR135W PKH3Q03306 898 aaPredicted RBP6.1□□□□□ -1.43
PRE9YGR135W SSA4P22202 642 aaKnown RBP6.09□□□□□ -1.43
PRE9YGR135W KTR1P27810 393 aaKnown RBP6.09□□□□□ -1.43
PRE9YGR135W YJU3P28321 313 aa6.09□□□□□ -1.43
PRE9YGR135W KIP2P28743 706 aa6.09□□□□□ -1.43
PRE9YGR135W ATG32P40458 529 aa6.08□□□□□ -1.44
PRE9YGR135W IXR1P33417 597 aa6.07□□□□□ -1.44
PRE9YGR135W RSC30P38781 883 aa6.07□□□□□ -1.44
PRE9YGR135W MSB3P48566 633 aaPredicted RBP6.07□□□□□ -1.44
PRE9YGR135W NOP7P53261 605 aaKnown RBP6.07□□□□□ -1.44
PRE9YGR135W SLD2P34252 453 aa6.06□□□□□ -1.44
PRE9YGR135W ARG8P18544 423 aa6.05□□□□□ -1.44
PRE9YGR135W RGA1P39083 1007 aa6.05□□□□□ -1.44
PRE9YGR135W RPL34AP87262 121 aaPredicted RBP6.05□□□□□ -1.44
PRE9YGR135W ENV9Q08651 330 aa6.05□□□□□ -1.44
PRE9YGR135W RTT106P40161 455 aa6.04□□□□□ -1.44
PRE9YGR135W VAC17P25591 423 aa6.03□□□□□ -1.44
PRE9YGR135W CPS1P27614 576 aa6.03□□□□□ -1.44
PRE9YGR135W GAR1P28007 205 aaKnown RBP6.03□□□□□ -1.44
PRE9YGR135W MET22P32179 357 aa6.03□□□□□ -1.44
PRE9YGR135W MRT4P33201 236 aaKnown RBP6.03□□□□□ -1.44
PRE9YGR135W YJR115WP47152 169 aa6.03□□□□□ -1.44
PRE9YGR135W RAD59Q12223 238 aa6.03□□□□□ -1.44
PRE9YGR135W TIF1P10081 395 aaKnown RBP6.02□□□□□ -1.45
PRE9YGR135W GBP2P25555 427 aaKnown RBP RIP-Chip data6.02□□□□□ -1.45not detected
PRE9YGR135W UGA3P26370 528 aa6.02□□□□□ -1.45
PRE9YGR135W ORC1P54784 914 aaPredicted RBP6.02□□□□□ -1.45
PRE9YGR135W YPR204WQ08995 1032 aa6.02□□□□□ -1.45
PRE9YGR135W NAP1P25293 417 aaKnown RBP6.01□□□□□ -1.45
PRE9YGR135W YBL036CP38197 257 aa6.01□□□□□ -1.45
PRE9YGR135W YDR444WQ04093 687 aa6.01□□□□□ -1.45
PRE9YGR135W CHD1P32657 1468 aa6.01□□□□□ -1.45
PRE9YGR135W HSL1P34244 1518 aa5.99□□□□□ -1.45
PRE9YGR135W MMS22Q06164 1454 aa5.99□□□□□ -1.45
PRE9YGR135W SNU71P53207 620 aaKnown RBP5.99□□□□□ -1.45
PRE9YGR135W YPL062WQ02781 134 aa5.99□□□□□ -1.45
PRE9YGR135W LCB5Q06147 687 aaKnown RBP5.99□□□□□ -1.45
PRE9YGR135W TY1B-DR4Q07793 1604 aa5.99□□□□□ -1.45
PRE9YGR135W CDC3P32457 520 aaKnown RBP5.98□□□□□ -1.45
PRE9YGR135W RTG2P32608 588 aaKnown RBP5.98□□□□□ -1.45
PRE9YGR135W MRX12P47084 519 aa5.98□□□□□ -1.45
PRE9YGR135W SRF1Q12516 437 aa5.98□□□□□ -1.45
PRE9YGR135W TTI1P36097 1038 aa5.97□□□□□ -1.45
PRE9YGR135W PTK2P47116 818 aaKnown RBP5.97□□□□□ -1.45
PRE9YGR135W FIG4P42837 879 aa5.96□□□□□ -1.46
PRE9YGR135W SPT6P23615 1451 aaKnown RBP5.96□□□□□ -1.46
PRE9YGR135W MAK16P10962 306 aaPredicted RBP5.95□□□□□ -1.46
PRE9YGR135W TEC1P18412 486 aa5.95□□□□□ -1.46
PRE9YGR135W BIO2P32451 375 aa5.94□□□□□ -1.46
PRE9YGR135W MET10P39692 1035 aa5.94□□□□□ -1.46
PRE9YGR135W NOP2P40991 618 aaKnown RBP5.94□□□□□ -1.46
PRE9YGR135W EMW1P42842 904 aaKnown RBP5.94□□□□□ -1.46
PRE9YGR135W YNL108CP53929 270 aa5.94□□□□□ -1.46
PRE9YGR135W IOC4Q04213 475 aa5.94□□□□□ -1.46
PRE9YGR135W NOB1Q08444 459 aaKnown RBP5.94□□□□□ -1.46
PRE9YGR135W XRN1P22147 1528 aaKnown RBP5.94□□□□□ -1.46
PRE9YGR135W YBL086CP38177 466 aa5.93□□□□□ -1.46
PRE9YGR135W NAF1P53919 492 aaKnown RBP5.93□□□□□ -1.46
PRE9YGR135W YLR346CQ06139 101 aa5.93□□□□□ -1.46
PRE9YGR135W RGA2Q06407 1009 aa5.93□□□□□ -1.46
PRE9YGR135W NUP85P46673 744 aa5.92□□□□□ -1.46
PRE9YGR135W APP1P53933 587 aa5.92□□□□□ -1.46
PRE9YGR135W ARG82P07250 355 aa5.91□□□□□ -1.46
PRE9YGR135W HAT1Q12341 374 aa5.91□□□□□ -1.46
PRE9YGR135W HEM3P28789 327 aa5.9□□□□□ -1.46
PRE9YGR135W CSE4P36012 229 aa5.9□□□□□ -1.46
PRE9YGR135W SSF1P38789 453 aaPredicted RBP5.9□□□□□ -1.46
PRE9YGR135W OPT2Q06593 877 aa5.9□□□□□ -1.46
PRE9YGR135W YPR084WQ06821 456 aa5.9□□□□□ -1.46
PRE9YGR135W HIR3P47171 1648 aa5.89□□□□□ -1.47
PRE9YGR135W GUT2P32191 649 aa5.89□□□□□ -1.47
PRE9YGR135W RRN6P32786 894 aa5.89□□□□□ -1.47
PRE9YGR135W AAD14P42884 376 aa5.89□□□□□ -1.47
PRE9YGR135W YML083CQ04526 418 aa5.89□□□□□ -1.47
PRE9YGR135W ITT1Q04638 464 aa5.89□□□□□ -1.47
PRE9YGR135W MKS1P34072 584 aa5.88□□□□□ -1.47
PRE9YGR135W SPT5P27692 1063 aaKnown RBP5.87□□□□□ -1.47
PRE9YGR135W GLY1P37303 387 aaKnown RBP5.87□□□□□ -1.47
PRE9YGR135W LSC2P53312 427 aa5.87□□□□□ -1.47
PRE9YGR135W YDL176WQ12027 708 aa5.87□□□□□ -1.47
PRE9YGR135W REV3P14284 1504 aa5.86□□□□□ -1.47
PRE9YGR135W MIP1P15801 1254 aa5.86□□□□□ -1.47
PRE9YGR135W PUP1P25043 261 aa5.86□□□□□ -1.47
PRE9YGR135W PAM1P37304 830 aaKnown RBP5.86□□□□□ -1.47
PRE9YGR135W SIN3P22579 1536 aa5.85□□□□□ -1.47
PRE9YGR135W UFD4P33202 1483 aa5.85□□□□□ -1.47
PRE9YGR135W ENO1P00924 437 aaKnown RBP5.85□□□□□ -1.47
PRE9YGR135W FBP26P32604 452 aa5.85□□□□□ -1.47
PRE9YGR135W SCW11P53189 542 aa5.85□□□□□ -1.47
PRE9YGR135W SEN54Q02825 467 aaPredicted RBP5.85□□□□□ -1.47
PRE9YGR135W STE20Q03497 939 aaKnown RBP5.85□□□□□ -1.47
PRE9YGR135W FRA1Q07825 749 aa5.85□□□□□ -1.47
PRE9YGR135W SIS2P36024 562 aa5.84□□□□□ -1.47
PRE9YGR135W ACO2P39533 789 aa5.84□□□□□ -1.47
PRE9YGR135W DFG5Q05031 458 aa5.84□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 48.2 ms