RNA–Protein interactions for RNA: YDL140C

RPO21, Transcript of RNA polymerase II largest subunit B220, yeast

Gene RPO21, Length 5,202 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPO21	YDL140C	RKM4	Q12504	494 aa		4.44	□□□□□ -1.7
RPO21	YDL140C	SEC3	P33332	1336 aa	Known RBP	4.44	□□□□□ -1.7
RPO21	YDL140C	APL2	P36000	726 aa	Predicted RBP	4.44	□□□□□ -1.7
RPO21	YDL140C	CSM3	Q04659	317 aa		4.44	□□□□□ -1.7
RPO21	YDL140C	SSM4	P40318	1319 aa		4.44	□□□□□ -1.7
RPO21	YDL140C	PPX1	P38698	397 aa		4.44	□□□□□ -1.7
RPO21	YDL140C	NMD3	P38861	518 aa	Known RBP	4.44	□□□□□ -1.7
RPO21	YDL140C	RPN11	P43588	306 aa	Known RBP	4.44	□□□□□ -1.7
RPO21	YDL140C	BUD31	P25337	157 aa	Predicted RBP	4.43	□□□□□ -1.7
RPO21	YDL140C	BDF2	Q07442	638 aa		4.43	□□□□□ -1.7
RPO21	YDL140C	ZDS1	P50111	915 aa	Known RBP	4.43	□□□□□ -1.7
RPO21	YDL140C	THO2	P53552	1597 aa	Known RBP	4.43	□□□□□ -1.7
RPO21	YDL140C	PDR11	P40550	1411 aa		4.43	□□□□□ -1.7
RPO21	YDL140C	SCC2	Q04002	1493 aa		4.43	□□□□□ -1.7
RPO21	YDL140C	SNU71	P53207	620 aa	Known RBP	4.43	□□□□□ -1.7
RPO21	YDL140C	RRG1	Q12167	365 aa	Predicted RBP	4.43	□□□□□ -1.7
RPO21	YDL140C	UGA3	P26370	528 aa		4.43	□□□□□ -1.7
RPO21	YDL140C	RXT2	P38255	430 aa		4.43	□□□□□ -1.7
RPO21	YDL140C	FAA3	P39002	694 aa		4.43	□□□□□ -1.7
RPO21	YDL140C	UTP22	P53254	1237 aa	Predicted RBP	4.43	□□□□□ -1.7
RPO21	YDL140C	YEL1	P34225	687 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	YFL040W	P43562	540 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	ITC1	P53125	1264 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	CWC21	Q03375	135 aa	Known RBP	4.42	□□□□□ -1.7
RPO21	YDL140C	YLL058W	Q12198	575 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	REV3	P14284	1504 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	SEM1	O94742	89 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.42	□□□□□ -1.7	not detected
RPO21	YDL140C	PUF6	Q04373	656 aa	Known RBP	4.42	□□□□□ -1.7
RPO21	YDL140C	MET7	Q08645	548 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	SRB8	P25648	1427 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	KCC4	P25389	1037 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	MDL2	P33311	773 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	PAH1	P32567	862 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	NMD2	P38798	1089 aa	Known RBP	4.42	□□□□□ -1.7
RPO21	YDL140C	SET1	P38827	1080 aa	Known RBP	4.42	□□□□□ -1.7
RPO21	YDL140C	TY3A-G	Q12173	290 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	TY3A-I	Q99219	290 aa		4.42	□□□□□ -1.7
RPO21	YDL140C	SGM1	P47166	707 aa		4.41	□□□□□ -1.7
RPO21	YDL140C	RNR4	P49723	345 aa	Known RBP	4.41	□□□□□ -1.7
RPO21	YDL140C	SPP41	P38904	1435 aa		4.41	□□□□□ -1.7
RPO21	YDL140C	LIF1	P53150	421 aa		4.41	□□□□□ -1.7
RPO21	YDL140C	APP1	P53933	587 aa		4.41	□□□□□ -1.7
RPO21	YDL140C	SSA4	P22202	642 aa	Known RBP	4.41	□□□□□ -1.7
RPO21	YDL140C	PSE1	P32337	1089 aa	Known RBP	4.41	□□□□□ -1.7
RPO21	YDL140C	CLF1	Q12309	687 aa	Predicted RBP	4.4	□□□□□ -1.7
RPO21	YDL140C	RPG1	P38249	964 aa	Known RBP	4.4	□□□□□ -1.7
RPO21	YDL140C	MAM1	P40065	302 aa		4.4	□□□□□ -1.7
RPO21	YDL140C	MNL2	Q12205	849 aa		4.4	□□□□□ -1.7
RPO21	YDL140C	CEX1	Q12453	761 aa		4.4	□□□□□ -1.7
RPO21	YDL140C	GUA1	P38625	525 aa	Known RBP	4.4	□□□□□ -1.71
RPO21	YDL140C	MMF1	P40185	145 aa	Known RBP	4.4	□□□□□ -1.71
RPO21	YDL140C	PEX14	P53112	341 aa		4.4	□□□□□ -1.71
RPO21	YDL140C	IMP4	P53941	290 aa	Known RBP	4.4	□□□□□ -1.71
RPO21	YDL140C	RCM1	P53972	490 aa		4.4	□□□□□ -1.71
RPO21	YDL140C	THS1	P04801	734 aa	Known RBP	4.4	□□□□□ -1.71
RPO21	YDL140C	YJU2	P28320	278 aa	Predicted RBP	4.4	□□□□□ -1.71
RPO21	YDL140C	LDH1	P38139	375 aa		4.4	□□□□□ -1.71
RPO21	YDL140C	YCF1	P39109	1515 aa	Known RBP	4.4	□□□□□ -1.71
RPO21	YDL140C	IRE1	P32361	1115 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	AFG2	P32794	780 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	TRM44	Q02648	567 aa	Known RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	RVB2	Q12464	471 aa	Known RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	PDR10	P51533	1564 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	MAK16	P10962	306 aa	Predicted RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	TFC4	P33339	1025 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	ATG19	P35193	415 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	RSM25	P40496	264 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	YJR107W	P47145	328 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	YRB30	P53107	440 aa	Predicted RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	PDS5	Q04264	1277 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	STS1	P38637	319 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	CTI6	Q08923	506 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	GIN4	Q12263	1142 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	MYO2	P19524	1574 aa	Known RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	YBR287W	P38355	427 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	TOM71	P38825	639 aa	Known RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	SHQ1	P40486	507 aa	Predicted RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	VPS15	P22219	1454 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	REB1	P21538	810 aa		4.39	□□□□□ -1.71
RPO21	YDL140C	GLN1	P32288	370 aa	Known RBP	4.39	□□□□□ -1.71
RPO21	YDL140C	AAP1	P37898	856 aa	Known RBP	4.38	□□□□□ -1.71
RPO21	YDL140C	SPR3	P41901	512 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	NST1	P53935	1240 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	NOP2	P40991	618 aa	Known RBP	4.38	□□□□□ -1.71
RPO21	YDL140C	FPK1	P53739	893 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	GIR2	Q03768	265 aa	Predicted RBP	4.38	□□□□□ -1.71
RPO21	YDL140C	SIZ1	Q04195	904 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	OSH2	Q12451	1283 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	MUM2	P38236	366 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	PBY1	P38254	753 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	CWH41	P53008	833 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	ETT1	Q08421	412 aa	Known RBP	4.38	□□□□□ -1.71
RPO21	YDL140C	FBP1	P09201	348 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	DSF2	P38213	736 aa		4.38	□□□□□ -1.71
RPO21	YDL140C	SSF1	P38789	453 aa	Predicted RBP	4.38	□□□□□ -1.71
RPO21	YDL140C	ROM2	P51862	1356 aa	Known RBP	4.37	□□□□□ -1.71
RPO21	YDL140C	TEA1	P47988	759 aa		4.37	□□□□□ -1.71
RPO21	YDL140C	COP1	P53622	1201 aa	Known RBP	4.37	□□□□□ -1.71
RPO21	YDL140C	JJJ1	P53863	590 aa		4.37	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 41.6 ms