RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 SENP3Q9H4L4 574 aaPredicted RBP14.53□□□□□ -0.08
PHGDH-228ENST00000641847 PLEKHH2Q8IVE3 1493 aa14.5□□□□□ -0.09
PHGDH-228ENST00000641847 TNRQ92752 1358 aa14.5□□□□□ -0.09
PHGDH-228ENST00000641847 CFDP1Q9UEE9 299 aaPredicted RBP14.5□□□□□ -0.09
PHGDH-228ENST00000641847 ATP7AQ04656 1500 aa14.5□□□□□ -0.09
PHGDH-228ENST00000641847 KIAA1107Q9UPP5 1409 aa14.49□□□□□ -0.09
PHGDH-228ENST00000641847 SYCP2Q9BX26 1530 aa14.49□□□□□ -0.09
PHGDH-228ENST00000641847 NCOA2Q15596 1464 aa14.49□□□□□ -0.09
PHGDH-228ENST00000641847 DNMT1P26358 1616 aaKnown RBP14.48□□□□□ -0.09
PHGDH-228ENST00000641847 PLXNC1O60486 1568 aa14.47□□□□□ -0.09
PHGDH-228ENST00000641847 NPHP4O75161 1426 aaPredicted RBP14.46□□□□□ -0.09
PHGDH-228ENST00000641847 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.46□□□□□ -0.1
PHGDH-228ENST00000641847 FBXO31Q5XUX0 539 aaPredicted RBP14.44□□□□□ -0.1
PHGDH-228ENST00000641847 FAM135AQ9P2D6 1515 aa14.44□□□□□ -0.1
PHGDH-228ENST00000641847 GPATCH8Q9UKJ3 1502 aaKnown RBP14.44□□□□□ -0.1
PHGDH-228ENST00000641847 CCNB3Q8WWL7 1395 aa14.44□□□□□ -0.1
PHGDH-228ENST00000641847 POLR1AO95602 1720 aaPredicted RBP14.44□□□□□ -0.1
PHGDH-228ENST00000641847 WASHC2CQ9Y4E1 1318 aa14.43□□□□□ -0.1
PHGDH-228ENST00000641847 CDC42BPAQ5VT25 1732 aa14.43□□□□□ -0.1
PHGDH-228ENST00000641847 NEURL4Q96JN8 1562 aa14.43□□□□□ -0.1
PHGDH-228ENST00000641847 KIF3BO15066 747 aa14.42□□□□□ -0.1
PHGDH-228ENST00000641847 RGS17Q9UGC6 210 aaPredicted RBP14.42□□□□□ -0.1
PHGDH-228ENST00000641847 VWDEQ8N2E2 1590 aa14.42□□□□□ -0.1
PHGDH-228ENST00000641847 MED14O60244 1454 aa14.41□□□□□ -0.1
PHGDH-228ENST00000641847 NLRP1Q9C000 1473 aa14.41□□□□□ -0.1
PHGDH-228ENST00000641847 INO80Q9ULG1 1556 aaPredicted RBP14.41□□□□□ -0.1
PHGDH-228ENST00000641847 PZPP20742 1482 aa14.4□□□□□ -0.1
PHGDH-228ENST00000641847 DHX29Q7Z478 1369 aaKnown RBP14.4□□□□□ -0.1
PHGDH-228ENST00000641847 MYOM3Q5VTT5 1437 aa14.4□□□□□ -0.1
PHGDH-228ENST00000641847 MIA2Q96PC5 1412 aa14.4□□□□□ -0.1
PHGDH-228ENST00000641847 ADGBQ8N7X0 1667 aa14.39□□□□□ -0.11
PHGDH-228ENST00000641847 UGGT1Q9NYU2 1555 aa14.39□□□□□ -0.11
PHGDH-228ENST00000641847 LRRC7Q96NW7 1537 aa14.38□□□□□ -0.11
PHGDH-228ENST00000641847 DEPDC5O75140 1603 aa14.37□□□□□ -0.11
PHGDH-228ENST00000641847 RNF17Q9BXT8 1623 aaKnown RBP14.37□□□□□ -0.11
PHGDH-228ENST00000641847 RTEL1-TNFRSF6BF6WH68 1400 aa14.37□□□□□ -0.11
PHGDH-228ENST00000641847 ALKQ9UM73 1620 aa14.37□□□□□ -0.11
PHGDH-228ENST00000641847 KDM5DQ9BY66 1539 aa14.36□□□□□ -0.11
PHGDH-228ENST00000641847 FGD6Q6ZV73 1430 aa14.36□□□□□ -0.11
PHGDH-228ENST00000641847 SRCAPQ6ZRS2 3230 aa14.36□□□□□ -0.11
PHGDH-228ENST00000641847 RRBP1Q9P2E9 1410 aaKnown RBP14.35□□□□□ -0.11
PHGDH-228ENST00000641847 POTEAQ6S8J7 498 aa14.35□□□□□ -0.11
PHGDH-228ENST00000641847 SYNMO15061 1565 aa14.34□□□□□ -0.11
PHGDH-228ENST00000641847 PTPN23Q9H3S7 1636 aa14.34□□□□□ -0.11
PHGDH-228ENST00000641847 IQGAP1P46940 1657 aa14.33□□□□□ -0.11
PHGDH-228ENST00000641847 RSPH4AQ5TD94 716 aa14.32□□□□□ -0.12
PHGDH-228ENST00000641847 ZNF644Q9H582 1327 aaPredicted RBP14.32□□□□□ -0.12
PHGDH-228ENST00000641847 FAM135BQ49AJ0 1406 aa14.32□□□□□ -0.12
PHGDH-228ENST00000641847 CAMSAP2Q08AD1 1489 aa14.31□□□□□ -0.12
PHGDH-228ENST00000641847 EID1Q9Y6B2 187 aa14.3□□□□□ -0.12
PHGDH-228ENST00000641847 TSPY4P0CV99 314 aa14.28□□□□□ -0.12
PHGDH-228ENST00000641847 TSPY10P0CW01 314 aa14.28□□□□□ -0.12
PHGDH-228ENST00000641847 TXNDC2Q86VQ3 553 aa14.28□□□□□ -0.12
PHGDH-228ENST00000641847 MBD5Q9P267 1494 aa14.28□□□□□ -0.12
PHGDH-228ENST00000641847 TRIM26Q12899 539 aaPredicted RBP14.27□□□□□ -0.13
PHGDH-228ENST00000641847 SCAF11Q99590 1463 aaKnown RBP14.26□□□□□ -0.13
PHGDH-228ENST00000641847 FAM50AQ14320 339 aaKnown RBP14.26□□□□□ -0.13
PHGDH-228ENST00000641847 CCDC141Q6ZP82 1450 aa14.25□□□□□ -0.13
PHGDH-228ENST00000641847 CROCC2H7BZ55 1655 aa14.23□□□□□ -0.13
PHGDH-228ENST00000641847 STRCP1A6NGW2 1772 aa14.23□□□□□ -0.13
PHGDH-228ENST00000641847 ARHGEF5Q12774 1597 aa14.22□□□□□ -0.13
PHGDH-228ENST00000641847 STAG3Q9UJ98 1225 aa14.22□□□□□ -0.13
PHGDH-228ENST00000641847 TMEM94Q12767 1356 aa14.22□□□□□ -0.13
PHGDH-228ENST00000641847 LTKP29376 864 aa14.21□□□□□ -0.13
PHGDH-228ENST00000641847 MEX3CQ5U5Q3 659 aaKnown RBP14.21□□□□□ -0.13
PHGDH-228ENST00000641847 ZNF772Q68DY9 489 aaPredicted RBP14.21□□□□□ -0.13
PHGDH-228ENST00000641847 PROSER2Q86WR7 435 aaPredicted RBP14.21□□□□□ -0.13
PHGDH-228ENST00000641847 UPF1Q92900 1129 aaKnown RBP eCLIP14.21□□□□□ -0.13
PHGDH-228ENST00000641847 JCADQ9P266 1359 aa14.21□□□□□ -0.14
PHGDH-228ENST00000641847 ERVK-7P63135 1459 aa14.2□□□□□ -0.14
PHGDH-228ENST00000641847 DAPK1P53355 1430 aa14.2□□□□□ -0.14
PHGDH-228ENST00000641847 KCNA6P17658 529 aa14.19□□□□□ -0.14
PHGDH-228ENST00000641847 ABCC5O15440 1437 aa14.18□□□□□ -0.14
PHGDH-228ENST00000641847 ITGAEP38570 1179 aa14.18□□□□□ -0.14
PHGDH-228ENST00000641847 ZC3H13Q5T200 1668 aaKnown RBP14.17□□□□□ -0.14
PHGDH-228ENST00000641847 ABCC3O15438 1527 aa14.17□□□□□ -0.14
PHGDH-228ENST00000641847 TRIM52Q96A61 297 aa14.17□□□□□ -0.14
PHGDH-228ENST00000641847 SLAIN2Q9P270 581 aa14.17□□□□□ -0.14
PHGDH-228ENST00000641847 MSH6P52701 1360 aa14.17□□□□□ -0.14
PHGDH-228ENST00000641847 SLIT1O75093 1534 aa14.16□□□□□ -0.14
PHGDH-228ENST00000641847 PCGF6Q9BYE7 350 aa14.16□□□□□ -0.14
PHGDH-228ENST00000641847 MAST1Q9Y2H9 1570 aa14.15□□□□□ -0.14
PHGDH-228ENST00000641847 ARHGAP23Q9P227 1491 aa14.15□□□□□ -0.14
PHGDH-228ENST00000641847 SPATA31A6Q5VVP1 1343 aa14.15□□□□□ -0.15
PHGDH-228ENST00000641847 ROBO1Q9Y6N7 1651 aa14.14□□□□□ -0.15
PHGDH-228ENST00000641847 TMEM2Q9UHN6 1383 aa14.14□□□□□ -0.15
PHGDH-228ENST00000641847 RXRBP28702 533 aa14.14□□□□□ -0.15
PHGDH-228ENST00000641847 BCANQ96GW7 911 aa14.14□□□□□ -0.15
PHGDH-228ENST00000641847 SETD1AO15047 1707 aaKnown RBP14.14□□□□□ -0.15
PHGDH-228ENST00000641847 UBR1Q8IWV7 1749 aa14.13□□□□□ -0.15
PHGDH-228ENST00000641847 FOXD1Q16676 465 aa14.13□□□□□ -0.15
PHGDH-228ENST00000641847 RBM33Q96EV2 1170 aaKnown RBP14.12□□□□□ -0.15
PHGDH-228ENST00000641847 SLC26A8Q96RN1 970 aa14.12□□□□□ -0.15
PHGDH-228ENST00000641847 ADGRL2O95490 1459 aa14.11□□□□□ -0.15
PHGDH-228ENST00000641847 GCC2Q8IWJ2 1684 aa14.1□□□□□ -0.15
PHGDH-228ENST00000641847 ARHGAP31Q2M1Z3 1444 aa14.09□□□□□ -0.15
PHGDH-228ENST00000641847 XIRP1Q702N8 1843 aaKnown RBP14.09□□□□□ -0.15
PHGDH-228ENST00000641847 C14orf37Q86TY3 774 aa14.09□□□□□ -0.15
PHGDH-228ENST00000641847 NKTRP30414 1462 aaKnown RBP14.09□□□□□ -0.15
PHGDH-228ENST00000641847 PRDM15P57071 1507 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms