RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 RPS3P23396 243 aaKnown RBP eCLIP9.23□□□□□ -0.932e-18■■■■□ 20.9
PHGDH-228ENST00000641847 SF3B4Q15427 424 aaKnown RBP eCLIP8.32□□□□□ -1.083e-16■■■■■ 41.5
PHGDH-228ENST00000641847 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.06□□□□□ -0.165e-16■■□□□ 13.6
PHGDH-228ENST00000641847 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.31□□□□□ -0.61e-14■□□□□ 11
PHGDH-228ENST00000641847 SRSF1Q07955 248 aaKnown RBP eCLIP9.39□□□□□ -0.912e-10■■■□□ 18.2
PHGDH-228ENST00000641847 ZNF622Q969S3 477 aaKnown RBP eCLIP12.22□□□□□ -0.453e-9■■■□□ 17.8
PHGDH-228ENST00000641847 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.65□□□□□ -1.025e-8■■■□□ 19.2
PHGDH-228ENST00000641847 PPIGQ13427 754 aaKnown RBP eCLIP10.89□□□□□ -0.676e-8■□□□□ 10.1
PHGDH-228ENST00000641847 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.08□□□□□ -0.88e-8■■■■□ 25.6
PHGDH-228ENST00000641847 FMR1Q06787 632 aaKnown RBP eCLIP11.96□□□□□ -0.491e-7■□□□□ 9.8
PHGDH-228ENST00000641847 G3BP1Q13283 466 aaKnown RBP eCLIP11.57□□□□□ -0.561e-7■■■■■ 37.6
PHGDH-228ENST00000641847 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.3□□□□□ -0.927e-7■■■□□ 17.2
PHGDH-228ENST00000641847 SND1Q7KZF4 910 aaKnown RBP eCLIP9.73□□□□□ -0.857e-7■□□□□ 8.7
PHGDH-228ENST00000641847 EFTUD2Q15029 972 aaKnown RBP eCLIP9.33□□□□□ -0.921e-6■□□□□ 8.1
PHGDH-228ENST00000641847 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.05□□□□□ -0.81e-6■□□□□ 10.9
Retrieved 15 of 15 RNA–protein pairs in 4.1 ms