RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 KDM5DQ9BY66 1539 aa22.54■■□□□ 1.2
PNKP-221ENST00000627317 PTPRKQ15262 1439 aa22.54■■□□□ 1.2
PNKP-221ENST00000627317 KIF3BO15066 747 aa22.53■■□□□ 1.2
PNKP-221ENST00000627317 FAM50AQ14320 339 aaKnown RBP22.53■■□□□ 1.2
PNKP-221ENST00000627317 MROH1Q8NDA8 1641 aa22.53■■□□□ 1.2
PNKP-221ENST00000627317 DUOX2Q9NRD8 1548 aa22.52■■□□□ 1.19
PNKP-221ENST00000627317 KIF15Q9NS87 1388 aa22.5■■□□□ 1.19
PNKP-221ENST00000627317 SETD1BQ9UPS6 1966 aaKnown RBP22.49■■□□□ 1.19
PNKP-221ENST00000627317 RRBP1Q9P2E9 1410 aaKnown RBP22.48■■□□□ 1.19
PNKP-221ENST00000627317 ERBINQ96RT1 1412 aa22.47■■□□□ 1.19
PNKP-221ENST00000627317 PZPP20742 1482 aa22.47■■□□□ 1.19
PNKP-221ENST00000627317 MYO3AQ8NEV4 1616 aa22.46■■□□□ 1.19
PNKP-221ENST00000627317 ADGRL2O95490 1459 aa22.46■■□□□ 1.19
PNKP-221ENST00000627317 ABCC3O15438 1527 aa22.46■■□□□ 1.19
PNKP-221ENST00000627317 ZNF142P52746 1687 aaPredicted RBP22.45■■□□□ 1.18
PNKP-221ENST00000627317 PRDM15P57071 1507 aaPredicted RBP22.44■■□□□ 1.18
PNKP-221ENST00000627317 NCOA1Q15788 1441 aa22.44■■□□□ 1.18
PNKP-221ENST00000627317 STRCQ7RTU9 1775 aa22.43■■□□□ 1.18
PNKP-221ENST00000627317 ZC3H13Q5T200 1668 aaKnown RBP22.43■■□□□ 1.18
PNKP-221ENST00000627317 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.43■■□□□ 1.18
PNKP-221ENST00000627317 WASHC2CQ9Y4E1 1318 aa22.41■■□□□ 1.18
PNKP-221ENST00000627317 DEPDC5O75140 1603 aa22.41■■□□□ 1.18
PNKP-221ENST00000627317 CEP170BQ9Y4F5 1589 aaPredicted RBP22.41■■□□□ 1.18
PNKP-221ENST00000627317 ANKRD30AQ9BXX3 1397 aa22.4■■□□□ 1.18
PNKP-221ENST00000627317 RRP7BPQ9NSQ0 103 aa22.4■■□□□ 1.18
PNKP-221ENST00000627317 FBXO31Q5XUX0 539 aaPredicted RBP22.36■■□□□ 1.17
PNKP-221ENST00000627317 A2ML1A8K2U0 1454 aa22.35■■□□□ 1.17
PNKP-221ENST00000627317 VWDEQ8N2E2 1590 aa22.35■■□□□ 1.17
PNKP-221ENST00000627317 ITGAEP38570 1179 aa22.35■■□□□ 1.17
PNKP-221ENST00000627317 CHIC2Q9UKJ5 165 aa22.35■■□□□ 1.17
PNKP-221ENST00000627317 TNRQ92752 1358 aa22.35■■□□□ 1.17
PNKP-221ENST00000627317 CAMSAP1Q5T5Y3 1602 aa22.35■■□□□ 1.17
PNKP-221ENST00000627317 SPATA31D1Q6ZQQ2 1576 aa22.34■■□□□ 1.17
PNKP-221ENST00000627317 PLA2R1Q13018 1463 aa22.34■■□□□ 1.17
PNKP-221ENST00000627317 CEP152O94986 1710 aa22.33■■□□□ 1.17
PNKP-221ENST00000627317 PTPRTO14522 1441 aa22.31■■□□□ 1.16
PNKP-221ENST00000627317 ARHGAP31Q2M1Z3 1444 aa22.31■■□□□ 1.16
PNKP-221ENST00000627317 ERVK-7P63135 1459 aa22.31■■□□□ 1.16
PNKP-221ENST00000627317 LMTK2Q8IWU2 1503 aa22.31■■□□□ 1.16
PNKP-221ENST00000627317 NLRP1Q9C000 1473 aa22.29■■□□□ 1.16
PNKP-221ENST00000627317 ROCK1Q13464 1354 aa22.29■■□□□ 1.16
PNKP-221ENST00000627317 ANKRD50Q9ULJ7 1429 aa22.27■■□□□ 1.16
PNKP-221ENST00000627317 DMRT2Q9Y5R5 561 aa22.26■■□□□ 1.15
PNKP-221ENST00000627317 ILDR1Q86SU0 546 aaPredicted RBP22.25■■□□□ 1.15
PNKP-221ENST00000627317 EFCAB6Q5THR3 1501 aa22.22■■□□□ 1.15
PNKP-221ENST00000627317 KANK1Q14678 1352 aa22.21■■□□□ 1.15
PNKP-221ENST00000627317 UNC13BO14795 1591 aa22.21■■□□□ 1.15
PNKP-221ENST00000627317 UGGT1Q9NYU2 1555 aa22.21■■□□□ 1.15
PNKP-221ENST00000627317 PKD2Q13563 968 aa22.2■■□□□ 1.14
PNKP-221ENST00000627317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.2■■□□□ 1.14
PNKP-221ENST00000627317 NCKAP5LQ9HCH0 1330 aa22.2■■□□□ 1.14
PNKP-221ENST00000627317 NEURL4Q96JN8 1562 aa22.2■■□□□ 1.14
PNKP-221ENST00000627317 LTBP4Q8N2S1 1624 aa22.18■■□□□ 1.14
PNKP-221ENST00000627317 NOS1P29475 1434 aa22.15■■□□□ 1.14
PNKP-221ENST00000627317 SYNMO15061 1565 aa22.15■■□□□ 1.14
PNKP-221ENST00000627317 FBXO41Q8TF61 875 aa22.14■■□□□ 1.13
PNKP-221ENST00000627317 POLR1AO95602 1720 aaPredicted RBP22.14■■□□□ 1.13
PNKP-221ENST00000627317 CERKQ8TCT0 537 aa22.13■■□□□ 1.13
PNKP-221ENST00000627317 UBR1Q8IWV7 1749 aa22.13■■□□□ 1.13
PNKP-221ENST00000627317 RPRD2Q5VT52 1461 aaKnown RBP22.13■■□□□ 1.13
PNKP-221ENST00000627317 TET3O43151 1660 aa22.12■■□□□ 1.13
PNKP-221ENST00000627317 GCC2Q8IWJ2 1684 aa22.12■■□□□ 1.13
PNKP-221ENST00000627317 MED14O60244 1454 aa22.12■■□□□ 1.13
PNKP-221ENST00000627317 THEMISQ8N1K5 641 aaPredicted RBP22.11■■□□□ 1.13
PNKP-221ENST00000627317 HFM1A2PYH4 1435 aa22.11■■□□□ 1.13
PNKP-221ENST00000627317 NAIPQ13075 1403 aa22.1■■□□□ 1.13
PNKP-221ENST00000627317 IQGAP3Q86VI3 1631 aa22.09■■□□□ 1.13
PNKP-221ENST00000627317 ARHGAP23Q9P227 1491 aa22.09■■□□□ 1.13
PNKP-221ENST00000627317 PIK3C2BO00750 1634 aa22.09■■□□□ 1.13
PNKP-221ENST00000627317 SLIT1O75093 1534 aa22.08■■□□□ 1.13
PNKP-221ENST00000627317 KDM5AP29375 1690 aaKnown RBP22.07■■□□□ 1.12
PNKP-221ENST00000627317 ZNF335Q9H4Z2 1342 aaPredicted RBP22.06■■□□□ 1.12
PNKP-221ENST00000627317 ANKLE2Q86XL3 938 aa22.05■■□□□ 1.12
PNKP-221ENST00000627317 NPHP4O75161 1426 aaPredicted RBP22.05■■□□□ 1.12
PNKP-221ENST00000627317 TRIM26Q12899 539 aaPredicted RBP22.04■■□□□ 1.12
PNKP-221ENST00000627317 CFAP65Q6ZU64 1925 aaKnown RBP22.04■■□□□ 1.12
PNKP-221ENST00000627317 IQSEC2Q5JU85 1478 aa22.03■■□□□ 1.12
PNKP-221ENST00000627317 SCAF11Q99590 1463 aaKnown RBP22.03■■□□□ 1.12
PNKP-221ENST00000627317 ADGRB3O60242 1522 aa22.02■■□□□ 1.12
PNKP-221ENST00000627317 E9PCH4 1651 aa22.02■■□□□ 1.12
PNKP-221ENST00000627317 IDI1Q13907 227 aa22.02■■□□□ 1.12
PNKP-221ENST00000627317 IQGAP1P46940 1657 aa22.01■■□□□ 1.11
PNKP-221ENST00000627317 NUP155O75694 1391 aa21.99■■□□□ 1.11
PNKP-221ENST00000627317 TMEM2Q9UHN6 1383 aa21.99■■□□□ 1.11
PNKP-221ENST00000627317 SETD5Q9C0A6 1442 aa21.98■■□□□ 1.11
PNKP-221ENST00000627317 LTKP29376 864 aa21.98■■□□□ 1.11
PNKP-221ENST00000627317 SLC52A1Q9NWF4 448 aa21.97■■□□□ 1.11
PNKP-221ENST00000627317 TMEM131LA2VDJ0 1609 aa21.93■■□□□ 1.1
PNKP-221ENST00000627317 CPS1P31327 1500 aa21.93■■□□□ 1.1
PNKP-221ENST00000627317 ZFYVE9O95405 1425 aa21.92■■□□□ 1.1
PNKP-221ENST00000627317 RAB3GAP2Q9H2M9 1393 aa21.92■■□□□ 1.1
PNKP-221ENST00000627317 TXNDC2Q86VQ3 553 aa21.91■■□□□ 1.1
PNKP-221ENST00000627317 TRIM52Q96A61 297 aa21.9■■□□□ 1.1
PNKP-221ENST00000627317 STRCP1A6NGW2 1772 aa21.88■■□□□ 1.09
PNKP-221ENST00000627317 ACIN1Q9UKV3 1341 aaKnown RBP21.87■■□□□ 1.09
PNKP-221ENST00000627317 STAG3Q9UJ98 1225 aa21.87■■□□□ 1.09
PNKP-221ENST00000627317 EID1Q9Y6B2 187 aa21.86■■□□□ 1.09
PNKP-221ENST00000627317 SPHKAPQ2M3C7 1700 aa21.84■■□□□ 1.09
PNKP-221ENST00000627317 MYO5BQ9ULV0 1848 aa21.83■■□□□ 1.09
PNKP-221ENST00000627317 TRPM2O94759 1503 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 851 ms