RNA–Protein interactions for RNA: ENST00000619396.4

KHSRP-213, Transcript of KH-type splicing regulatory protein, human

APPRIS ALT2 TSL 5 BASIC

Gene KHSRP, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KHSRP-213	ENST00000619396	PLXNC1	O60486	1568 aa		41.19	■■■■■ 4.18
KHSRP-213	ENST00000619396	DHX29	Q7Z478	1369 aa	Known RBP	41.18	■■■■■ 4.18
KHSRP-213	ENST00000619396	EFCAB2	Q5VUJ9	269 aa		41.18	■■■■■ 4.18
KHSRP-213	ENST00000619396	UNC13B	O14795	1591 aa		41.17	■■■■■ 4.18
KHSRP-213	ENST00000619396	UHRF1BP1	Q6BDS2	1440 aa		41.16	■■■■■ 4.18
KHSRP-213	ENST00000619396	KDM5C	P41229	1560 aa		41.15	■■■■■ 4.18
KHSRP-213	ENST00000619396	TRAPPC8	Q9Y2L5	1435 aa		41.14	■■■■■ 4.18
KHSRP-213	ENST00000619396	ABCC1	P33527	1531 aa		41.13	■■■■■ 4.17
KHSRP-213	ENST00000619396	DCAF11	Q8TEB1	546 aa		41.12	■■■■■ 4.17
KHSRP-213	ENST00000619396	ARID4B	Q4LE39	1312 aa	Predicted RBP	41.1	■■■■■ 4.17
KHSRP-213	ENST00000619396	RALGAPB	Q86X10	1494 aa		41.07	■■■■■ 4.17
KHSRP-213	ENST00000619396	DUOX2	Q9NRD8	1548 aa		41.07	■■■■■ 4.17
KHSRP-213	ENST00000619396	PLA2R1	Q13018	1463 aa		41.05	■■■■■ 4.16
KHSRP-213	ENST00000619396	POLR3GL	Q9BT43	218 aa		41.02	■■■■■ 4.16
KHSRP-213	ENST00000619396	IQGAP3	Q86VI3	1631 aa		41.02	■■■■■ 4.16
KHSRP-213	ENST00000619396	CARD11	Q9BXL7	1154 aa		41.02	■■■■■ 4.16
KHSRP-213	ENST00000619396	CCDC144A	A2RUR9	1427 aa		41.01	■■■■■ 4.16
KHSRP-213	ENST00000619396	AFAP1	Q8N556	730 aa		41.01	■■■■■ 4.15
KHSRP-213	ENST00000619396	PPP4R2	Q9NY27	417 aa		41.01	■■■■■ 4.15
KHSRP-213	ENST00000619396	WDR7	Q9Y4E6	1490 aa		40.99	■■■■■ 4.15
KHSRP-213	ENST00000619396	RGL3	Q3MIN7	710 aa		40.98	■■■■■ 4.15
KHSRP-213	ENST00000619396	ERBIN	Q96RT1	1412 aa		40.97	■■■■■ 4.15
KHSRP-213	ENST00000619396	MAGI2	Q86UL8	1455 aa		40.92	■■■■■ 4.14
KHSRP-213	ENST00000619396	SPAG9	O60271	1321 aa	Known RBP	40.91	■■■■■ 4.14
KHSRP-213	ENST00000619396	ROCK2	O75116	1388 aa	Known RBP	40.91	■■■■■ 4.14
KHSRP-213	ENST00000619396	CNGB1	Q14028	1251 aa	Predicted RBP	40.88	■■■■■ 4.13
KHSRP-213	ENST00000619396	ARAP3	Q8WWN8	1544 aa		40.87	■■■■■ 4.13
KHSRP-213	ENST00000619396	ST20-MTHFS	A0A0A6YYL1	179 aa		40.87	■■■■■ 4.13
KHSRP-213	ENST00000619396	ZFYVE16	Q7Z3T8	1539 aa		40.85	■■■■■ 4.13
KHSRP-213	ENST00000619396	SMG6	Q86US8	1419 aa	Known RBP	40.84	■■■■■ 4.13
KHSRP-213	ENST00000619396	PRAG1	Q86YV5	1406 aa		40.83	■■■■■ 4.13
KHSRP-213	ENST00000619396	FANCA	O15360	1455 aa		40.83	■■■■■ 4.13
KHSRP-213	ENST00000619396	A2M	P01023	1474 aa		40.83	■■■■■ 4.13
KHSRP-213	ENST00000619396	ABCA9	Q8IUA7	1624 aa		40.82	■■■■■ 4.12
KHSRP-213	ENST00000619396	TRPM1	Q7Z4N2	1603 aa		40.8	■■■■■ 4.12
KHSRP-213	ENST00000619396	ASXL2	Q76L83	1435 aa		40.8	■■■■■ 4.12
KHSRP-213	ENST00000619396	NBPF1	Q3BBV0	1214 aa		40.78	■■■■■ 4.12
KHSRP-213	ENST00000619396	RTEL1-TNFRSF6B	F6WH68	1400 aa		40.77	■■■■■ 4.12
KHSRP-213	ENST00000619396	PNISR	Q8TF01	805 aa	Known RBP	40.75	■■■■■ 4.11
KHSRP-213	ENST00000619396	FANCI	Q9NVI1	1328 aa		40.74	■■■■■ 4.11
KHSRP-213	ENST00000619396	OSCAR	Q8IYS5	282 aa		40.73	■■■■■ 4.11
KHSRP-213	ENST00000619396	ATP10A	O60312	1499 aa		40.72	■■■■■ 4.11
KHSRP-213	ENST00000619396	NUDC	Q9Y266	331 aa		40.7	■■■■■ 4.11
KHSRP-213	ENST00000619396		E9PCH4	1651 aa		40.7	■■■■■ 4.11
KHSRP-213	ENST00000619396	MSH5	O43196	834 aa		40.69	■■■■■ 4.1
KHSRP-213	ENST00000619396	ATP7A	Q04656	1500 aa		40.69	■■■■■ 4.1
KHSRP-213	ENST00000619396	SCAPER	Q9BY12	1400 aa		40.69	■■■■■ 4.1
KHSRP-213	ENST00000619396	ADGRL1	O94910	1474 aa		40.69	■■■■■ 4.1
KHSRP-213	ENST00000619396	B4GALNT3	Q6L9W6	998 aa		40.69	■■■■■ 4.1
KHSRP-213	ENST00000619396	MYT1L	Q9UL68	1186 aa		40.67	■■■■■ 4.1
KHSRP-213	ENST00000619396	RNF123	Q5XPI4	1314 aa		40.67	■■■■■ 4.1
KHSRP-213	ENST00000619396	INO80	Q9ULG1	1556 aa	Predicted RBP	40.67	■■■■■ 4.1
KHSRP-213	ENST00000619396	TMC1	Q8TDI8	760 aa		40.63	■■■■■ 4.09
KHSRP-213	ENST00000619396	KTN1	Q86UP2	1357 aa	Known RBP	40.63	■■■■■ 4.09
KHSRP-213	ENST00000619396	LRPPRC	P42704	1394 aa	Known RBP	40.6	■■■■■ 4.09
KHSRP-213	ENST00000619396	DEPDC5	O75140	1603 aa		40.6	■■■■■ 4.09
KHSRP-213	ENST00000619396	BRD4	O60885	1362 aa	Predicted RBP	40.57	■■■■■ 4.09
KHSRP-213	ENST00000619396	RALBP1	Q15311	655 aa		40.57	■■■■■ 4.09
KHSRP-213	ENST00000619396	GPRASP1	Q5JY77	1395 aa		40.56	■■■■■ 4.08
KHSRP-213	ENST00000619396	MYBBP1A	Q9BQG0	1328 aa	Known RBP	40.56	■■■■■ 4.08
KHSRP-213	ENST00000619396	KIF3B	O15066	747 aa		40.56	■■■■■ 4.08
KHSRP-213	ENST00000619396	NPM1	P06748	294 aa	Known RBP eCLIP	40.53	■■■■■ 4.08
KHSRP-213	ENST00000619396	SPHKAP	Q2M3C7	1700 aa		40.5	■■■■■ 4.07
KHSRP-213	ENST00000619396	PRDM15	P57071	1507 aa	Predicted RBP	40.5	■■■■■ 4.07
KHSRP-213	ENST00000619396	TRPM2	O94759	1503 aa		40.49	■■■■■ 4.07
KHSRP-213	ENST00000619396	EIF2AK4	Q9P2K8	1649 aa	Known RBP	40.48	■■■■■ 4.07
KHSRP-213	ENST00000619396	TET3	O43151	1660 aa		40.47	■■■■■ 4.07
KHSRP-213	ENST00000619396	LAMC1	P11047	1609 aa		40.47	■■■■■ 4.07
KHSRP-213	ENST00000619396	CLTCL1	P53675	1640 aa		40.47	■■■■■ 4.07
KHSRP-213	ENST00000619396	KIDINS220	Q9ULH0	1771 aa		40.45	■■■■■ 4.07
KHSRP-213	ENST00000619396	PTPRT	O14522	1441 aa		40.45	■■■■■ 4.07
KHSRP-213	ENST00000619396	VWDE	Q8N2E2	1590 aa		40.45	■■■■■ 4.07
KHSRP-213	ENST00000619396	MROH1	Q8NDA8	1641 aa		40.43	■■■■■ 4.06
KHSRP-213	ENST00000619396	TESK2	Q96S53	571 aa		40.43	■■■■■ 4.06
KHSRP-213	ENST00000619396	KANK1	Q14678	1352 aa		40.43	■■■■■ 4.06
KHSRP-213	ENST00000619396	CEP152	O94986	1710 aa		40.42	■■■■■ 4.06
KHSRP-213	ENST00000619396	DISP3	Q9P2K9	1392 aa		40.41	■■■■■ 4.06
KHSRP-213	ENST00000619396	PARD3	Q8TEW0	1356 aa		40.4	■■■■■ 4.06
KHSRP-213	ENST00000619396	SENP3-EIF4A1	A0A087X0R7	540 aa		40.39	■■■■■ 4.06
KHSRP-213	ENST00000619396	CD109	Q6YHK3	1445 aa		40.38	■■■■■ 4.05
KHSRP-213	ENST00000619396	MADD	Q8WXG6	1647 aa		40.38	■■■■■ 4.05
KHSRP-213	ENST00000619396	RNF17	Q9BXT8	1623 aa	Known RBP	40.37	■■■■■ 4.05
KHSRP-213	ENST00000619396	PER1	O15534	1290 aa	Predicted RBP	40.37	■■■■■ 4.05
KHSRP-213	ENST00000619396	COL17A1	Q9UMD9	1497 aa	Predicted RBP	40.35	■■■■■ 4.05
KHSRP-213	ENST00000619396	ZNF518A	Q6AHZ1	1483 aa		40.34	■■■■■ 4.05
KHSRP-213	ENST00000619396	NLRP13	Q86W25	1043 aa		40.33	■■■■■ 4.05
KHSRP-213	ENST00000619396	UGGT1	Q9NYU2	1555 aa		40.32	■■■■■ 4.04
KHSRP-213	ENST00000619396	CCDC136	Q96JN2	1154 aa		40.26	■■■■■ 4.04
KHSRP-213	ENST00000619396	WASHC2C	Q9Y4E1	1318 aa		40.24	■■■■■ 4.03
KHSRP-213	ENST00000619396	POGZ	Q7Z3K3	1410 aa		40.23	■■■■■ 4.03
KHSRP-213	ENST00000619396	PPRC1	Q5VV67	1664 aa	Known RBP	40.21	■■■■■ 4.03
KHSRP-213	ENST00000619396	TMF1	P82094	1093 aa		40.2	■■■■■ 4.03
KHSRP-213	ENST00000619396	EFCAB6	Q5THR3	1501 aa		40.2	■■■■■ 4.03
KHSRP-213	ENST00000619396	IQGAP1	P46940	1657 aa		40.19	■■■■■ 4.03
KHSRP-213	ENST00000619396	CFAP74	Q9C0B2	1584 aa		40.18	■■■■■ 4.02
KHSRP-213	ENST00000619396	PANK3	Q9H999	370 aa		40.16	■■■■■ 4.02
KHSRP-213	ENST00000619396	FRMPD1	Q5SYB0	1578 aa		40.16	■■■■■ 4.02
KHSRP-213	ENST00000619396	PDE3B	Q13370	1112 aa		40.14	■■■■■ 4.02
KHSRP-213	ENST00000619396	RRP1	P56182	461 aa	Known RBP	40.12	■■■■■ 4.01
KHSRP-213	ENST00000619396	RAPGEF3	O95398	923 aa		40.12	■■■■■ 4.01

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms