RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 RRP7AQ9Y3A4 280 aaKnown RBP11.6□□□□□ -0.55
PDLIM5-222ENST00000615540 KIAA0586Q9BVV6 1533 aa11.6□□□□□ -0.55
PDLIM5-222ENST00000615540 MIA2Q96PC5 1412 aa11.6□□□□□ -0.55
PDLIM5-222ENST00000615540 CYB5RLQ6IPT4 315 aa11.59□□□□□ -0.55
PDLIM5-222ENST00000615540 AFAP1Q8N556 730 aa11.59□□□□□ -0.55
PDLIM5-222ENST00000615540 NOP58Q9Y2X3 529 aaKnown RBP11.59□□□□□ -0.55
PDLIM5-222ENST00000615540 LMOD2Q6P5Q4 547 aa11.59□□□□□ -0.55
PDLIM5-222ENST00000615540 MAPKBP1O60336 1514 aa11.58□□□□□ -0.56
PDLIM5-222ENST00000615540 U2AF1L5P0DN76 240 aaPredicted RBP11.58□□□□□ -0.56
PDLIM5-222ENST00000615540 U2AF1Q01081 240 aaKnown RBP eCLIP11.58□□□□□ -0.561e-7■■■■■ 28.2
PDLIM5-222ENST00000615540 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.58□□□□□ -0.56
PDLIM5-222ENST00000615540 CFAP43Q8NDM7 1665 aa11.58□□□□□ -0.56
PDLIM5-222ENST00000615540 MAP3K1Q13233 1512 aa11.58□□□□□ -0.56
PDLIM5-222ENST00000615540 CCDC184Q52MB2 194 aa11.57□□□□□ -0.56
PDLIM5-222ENST00000615540 NLRP13Q86W25 1043 aa11.57□□□□□ -0.56
PDLIM5-222ENST00000615540 ABCC5O15440 1437 aa11.57□□□□□ -0.56
PDLIM5-222ENST00000615540 PTPRKQ15262 1439 aa11.57□□□□□ -0.56
PDLIM5-222ENST00000615540 NBPF1Q3BBV0 1214 aa11.57□□□□□ -0.56
PDLIM5-222ENST00000615540 DDRGK1Q96HY6 314 aa11.57□□□□□ -0.56
PDLIM5-222ENST00000615540 NUTM2FA1L443 756 aa11.56□□□□□ -0.56
PDLIM5-222ENST00000615540 KIAA1107Q9UPP5 1409 aa11.56□□□□□ -0.56
PDLIM5-222ENST00000615540 A0A0G2JS52 829 aa11.56□□□□□ -0.56
PDLIM5-222ENST00000615540 OSCARQ8IYS5 282 aa11.56□□□□□ -0.56
PDLIM5-222ENST00000615540 HDGFL2Q7Z4V5 671 aaPredicted RBP11.55□□□□□ -0.56
PDLIM5-222ENST00000615540 KIF14Q15058 1648 aa11.55□□□□□ -0.56
PDLIM5-222ENST00000615540 ZBED9Q6R2W3 1325 aa11.55□□□□□ -0.56
PDLIM5-222ENST00000615540 SPRYD3Q8NCJ5 442 aa11.54□□□□□ -0.56
PDLIM5-222ENST00000615540 EXOC6Q8TAG9 804 aa11.53□□□□□ -0.56
PDLIM5-222ENST00000615540 PBRM1Q86U86 1689 aa11.53□□□□□ -0.56
PDLIM5-222ENST00000615540 MAGI1Q96QZ7 1491 aaPredicted RBP11.53□□□□□ -0.56
PDLIM5-222ENST00000615540 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.53□□□□□ -0.56
PDLIM5-222ENST00000615540 RAPGEF6Q8TEU7 1601 aa11.52□□□□□ -0.56
PDLIM5-222ENST00000615540 C11orf95C9JLR9 678 aaPredicted RBP11.52□□□□□ -0.57
PDLIM5-222ENST00000615540 MINK1Q8N4C8 1332 aaPredicted RBP11.52□□□□□ -0.57
PDLIM5-222ENST00000615540 TMEM132EQ6IEE7 984 aa11.51□□□□□ -0.57
PDLIM5-222ENST00000615540 GOLGA2Q08379 1002 aa11.51□□□□□ -0.57
PDLIM5-222ENST00000615540 UGGT2Q9NYU1 1516 aa11.51□□□□□ -0.57
PDLIM5-222ENST00000615540 ADAMTS12P58397 1594 aa11.51□□□□□ -0.57
PDLIM5-222ENST00000615540 PAK3O75914 559 aaPredicted RBP11.5□□□□□ -0.57
PDLIM5-222ENST00000615540 TPRNQ4KMQ1 711 aa11.5□□□□□ -0.57
PDLIM5-222ENST00000615540 CLUAP1Q96AJ1 413 aa11.5□□□□□ -0.57
PDLIM5-222ENST00000615540 ITPRIPQ8IWB1 547 aa11.5□□□□□ -0.57
PDLIM5-222ENST00000615540 CRBNQ96SW2 442 aa11.49□□□□□ -0.57
PDLIM5-222ENST00000615540 RRP1P56182 461 aaKnown RBP11.49□□□□□ -0.57
PDLIM5-222ENST00000615540 BECN1Q14457 450 aa11.49□□□□□ -0.57
PDLIM5-222ENST00000615540 BCL2L13Q9BXK5 485 aa11.49□□□□□ -0.57
PDLIM5-222ENST00000615540 AKNAQ7Z591 1439 aa11.48□□□□□ -0.57
PDLIM5-222ENST00000615540 ROCK1Q13464 1354 aa11.48□□□□□ -0.57
PDLIM5-222ENST00000615540 APBB1O00213 710 aa11.47□□□□□ -0.57
PDLIM5-222ENST00000615540 FAM69CQ0P6D2 419 aa11.47□□□□□ -0.57
PDLIM5-222ENST00000615540 SCAPERQ9BY12 1400 aa11.47□□□□□ -0.57
PDLIM5-222ENST00000615540 CFAP70Q5T0N1 1121 aa11.47□□□□□ -0.57
PDLIM5-222ENST00000615540 CABP2Q9NPB3 220 aa11.47□□□□□ -0.57
PDLIM5-222ENST00000615540 PNNQ9H307 717 aaKnown RBP11.46□□□□□ -0.57
PDLIM5-222ENST00000615540 KIAA0556O60303 1618 aa11.46□□□□□ -0.57
PDLIM5-222ENST00000615540 ANKRD30BQ9BXX2 1392 aa11.46□□□□□ -0.57
PDLIM5-222ENST00000615540 HDGFP51858 240 aaKnown RBP11.46□□□□□ -0.58
PDLIM5-222ENST00000615540 HAP1P54257 671 aaPredicted RBP11.46□□□□□ -0.58
PDLIM5-222ENST00000615540 APAF1O14727 1248 aa11.45□□□□□ -0.58
PDLIM5-222ENST00000615540 EIF4G3O43432 1585 aaKnown RBP11.45□□□□□ -0.58
PDLIM5-222ENST00000615540 ERICH6BQ5W0A0 696 aa11.45□□□□□ -0.58
PDLIM5-222ENST00000615540 CENPJQ9HC77 1338 aaPredicted RBP11.45□□□□□ -0.58
PDLIM5-222ENST00000615540 CDCA7LQ96GN5 454 aa11.45□□□□□ -0.58
PDLIM5-222ENST00000615540 TERF2IPQ9NYB0 399 aa11.45□□□□□ -0.58
PDLIM5-222ENST00000615540 NUP153P49790 1475 aaKnown RBP11.44□□□□□ -0.58
PDLIM5-222ENST00000615540 CCDC141Q6ZP82 1450 aa11.44□□□□□ -0.58
PDLIM5-222ENST00000615540 SMC4Q9NTJ3 1288 aa11.44□□□□□ -0.58
PDLIM5-222ENST00000615540 WDR62O43379 1518 aa11.44□□□□□ -0.58
PDLIM5-222ENST00000615540 EVC2Q86UK5 1308 aa11.44□□□□□ -0.58
PDLIM5-222ENST00000615540 ABCA5Q8WWZ7 1642 aa11.43□□□□□ -0.58
PDLIM5-222ENST00000615540 ADAMTS8Q9UP79 889 aa11.42□□□□□ -0.58
PDLIM5-222ENST00000615540 CGNL1Q0VF96 1302 aa11.42□□□□□ -0.58
PDLIM5-222ENST00000615540 VGFO15240 615 aaPredicted RBP11.42□□□□□ -0.58
PDLIM5-222ENST00000615540 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
PDLIM5-222ENST00000615540 ERBINQ96RT1 1412 aa11.42□□□□□ -0.58
PDLIM5-222ENST00000615540 PDE3BQ13370 1112 aa11.41□□□□□ -0.58
PDLIM5-222ENST00000615540 GPATCH8Q9UKJ3 1502 aaKnown RBP11.41□□□□□ -0.58
PDLIM5-222ENST00000615540 RAPGEF3O95398 923 aa11.41□□□□□ -0.58
PDLIM5-222ENST00000615540 NCLP19338 710 aaKnown RBP11.4□□□□□ -0.58
PDLIM5-222ENST00000615540 RTF1Q92541 710 aaKnown RBP11.4□□□□□ -0.58
PDLIM5-222ENST00000615540 LTV1Q96GA3 475 aaPredicted RBP11.4□□□□□ -0.58
PDLIM5-222ENST00000615540 PLEKHH2Q8IVE3 1493 aa11.4□□□□□ -0.58
PDLIM5-222ENST00000615540 ELL2O00472 640 aaPredicted RBP11.4□□□□□ -0.58
PDLIM5-222ENST00000615540 NCOA1Q15788 1441 aa11.4□□□□□ -0.58
PDLIM5-222ENST00000615540 TCERG1O14776 1098 aaKnown RBP11.4□□□□□ -0.59
PDLIM5-222ENST00000615540 ITSN2Q9NZM3 1697 aa11.39□□□□□ -0.59
PDLIM5-222ENST00000615540 PPP2R1AP30153 589 aa11.39□□□□□ -0.59
PDLIM5-222ENST00000615540 CASC1Q6TDU7 716 aa11.39□□□□□ -0.59
PDLIM5-222ENST00000615540 MS4A1P11836 297 aa11.39□□□□□ -0.59
PDLIM5-222ENST00000615540 SLC4A3P48751 1232 aa11.39□□□□□ -0.59
PDLIM5-222ENST00000615540 GGNBP2Q9H3C7 697 aa11.39□□□□□ -0.59
PDLIM5-222ENST00000615540 EIF5BO60841 1220 aaKnown RBP11.38□□□□□ -0.59
PDLIM5-222ENST00000615540 COG6Q9Y2V7 657 aa11.38□□□□□ -0.59
PDLIM5-222ENST00000615540 BRD4O60885 1362 aaPredicted RBP11.38□□□□□ -0.59
PDLIM5-222ENST00000615540 ANP32BQ92688 251 aaKnown RBP11.38□□□□□ -0.59
PDLIM5-222ENST00000615540 HSP90AB1P08238 724 aaKnown RBP11.38□□□□□ -0.59
PDLIM5-222ENST00000615540 DEKP35659 375 aaKnown RBP11.38□□□□□ -0.59
PDLIM5-222ENST00000615540 OS9Q13438 667 aaPredicted RBP11.37□□□□□ -0.59
PDLIM5-222ENST00000615540 MFAP1P55081 439 aaKnown RBP11.37□□□□□ -0.59
PDLIM5-222ENST00000615540 ATP10BO94823 1461 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms